Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001503

Physical Location & Seq

Genomic Coordinates Forward (+)

4853220 .. 4854660

Gene Structure 1441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1068500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGTTAAATCTCCTCATTGCTACGGGAACATTTTGAAATCGGAGAATAACAAGATCGCGAAAGCTTCTCCATCATTTTTGTATCTTCATCTGGCTTATGATTATGATGATCAAGATAAGCTCTTTTTCTGCGATGAAGAACAAAGTCTGATCGAGAAAGTTCATTGGCTGTTTATGAGAACAGATAACTACTTTGTTCCCTCGCTTTTCTTGATGCCCTCTTTTGAGCAAGAACTCGAAAAGCTCTTCCCCAAAAAGGAAAATGTTTTCCACCACTTGGGTAGGTATCGTTTCCACCCTTCAAATCATATATGGGGGATGATCACAAGGTACTACCAAGCTTACTTAGCAAAGGCAGATGAGAGGATTGGGATTCAAGTTCGAACTTTCGAGCCAGGGCCTAATCCCTTTCCGCATGTGATGAACCAAATTTATGCGTGTGTTTTCAAGGAGAAACTGCTGCCTCAGGTAGAAAGGAAGAAACCAATAATCGACGCAGCTCCATCAGGGATGCCGAAACAGAAGTCGGTTTTATTTACTTCTTTGACCTCAGGGTACTCTGAGAATGTACAAAATCGTCCAAGATCGAGGAGAAAAAAATTTGCATCCACATGGGACATAATAGGGGTTTTCCAACCTAGCCATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008417 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009969 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0036065 GO:0042546 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046983 GO:0070085 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XG_FTase

Protein Analysis

217

Amino Acids

25.44

Weight (kDa)

9.11

Isoelectric Point (pI)

52.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XG_FTase	PF03254	3 - 216	9.2e-70	Xyloglucan fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03220
fragaria_vesca	FvH4_4g30950 FvH4_5g14640
malus_domestica	MD00G1081500.v1.1 MD14G1203600.v1.1 MD16G1068500.v1.1 MD16G1068600.v1.1 MD16G1068700.v1.1
prunus_persica	Prupe.1G278500_v2.0.a1 Prupe.5G196900_v2.0.a1
pyrus_communis	pycom14g16840 pycom16g05990 pycom16g06000
rosa_chinensis	RchiOBHm_Chr3g0485401 RchiOBHm_Chr3g0485411 RchiOBHm_Chr4g0439291 RchiOBHm_Chr4g0439301 RchiOBHm_Chr7g0181851
rosa_laevigata	RLG00000005169 RLG00000006282 RLG00000006284 RLG00000023152
rosa_multiflora	Rmu_co8397081.1_g000001 Rmu_sc0006598.1_g000004 Rmu_sc0006598.1_g000006 Rmu_sc0007912.1_g000001 Rmu_sc0021327.1_g000004 Rmu_ssc0000171.1_g000019
rosa_roxburghii	Rroxscaffold_3G00271700 Rroxscaffold_5G00380250
rosa_rugosa	Rorug04G0317200 Rorug04G0317200 Rorug06G0444400
rosa_samantha	Rh4AG368000 Rh4AG368100 Rh4BG379900 Rh4BG380000 Rh4CG394100 Rh4CG394200 Rh4CG394300 Rh4DG374300 Rh4DG374400 Rh7AG046700 Rh7BG046300 Rh7CG046800 Rh7DG045900
rosa_wichuraiana	Rw0G005600 Rw0G011610 Rw3G023710 Rw5G028570 Rw7G003860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	277
AccII	CGCG	1 cut(s)	59
AciI	CCGC	1 cut(s)	413
AcsI	RAATTY	2 cut(s)	429, 599
AfaI	GTAC	3 cut(s)	332, 557, 570
AfiI	CCNNNNNNNGG	2 cut(s)	256, 277
AgsI	TTSAA	4 cut(s)	37, 303, 377, 448
AjnI	CCWGG	1 cut(s)	394
AluBI	AGCT	5 cut(s)	65, 121, 244, 341, 500
AluI	AGCT	5 cut(s)	65, 121, 244, 341, 500
AoxI	GGCC	1 cut(s)	398
ApeKI	GCWGC	2 cut(s)	460, 497
ApoI	RAATTY	2 cut(s)	429, 599
ArsI	GACNNNNNNTTYG	2 cut(s)	509, 541
AspS9I	GGNCC	1 cut(s)	398
AsuII	TTCGAA	1 cut(s)	382
AxyI	CCTNAGG	2 cut(s)	465, 550
BbvI	GCAGC	2 cut(s)	447, 509
BccI	CCATC	2 cut(s)	79, 511
BciT130I	CCWGG	1 cut(s)	396
BclI	TGATCA	2 cut(s)	109, 321
BfaI	CTAG	1 cut(s)	639
BisI	GCNGC	2 cut(s)	461, 498
BlsI	GCNGC	2 cut(s)	462, 499
Bme1390I	CCNGG	1 cut(s)	396
BmgT120I	GGNCC	1 cut(s)	398
BmrFI	CCNGG	1 cut(s)	396
BmsI	GCATC	3 cut(s)	204, 501, 614
Bpu14I	TTCGAA	1 cut(s)	382
BsaJI	CCNNGG	1 cut(s)	395
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 277
Bse21I	CCTNAGG	2 cut(s)	465, 550
Bse3DI	GCAATG	1 cut(s)	16
BseBI	CCWGG	1 cut(s)	396
BseDI	CCNNGG	1 cut(s)	395
BseGI	GGATG	3 cut(s)	324, 516, 605
BseLI	CCNNNNNNNGG	2 cut(s)	256, 277
BseMI	GCAATG	1 cut(s)	16
BseMII	CTCAG	3 cut(s)	479, 552, 564
BseRI	GAGGAG	1 cut(s)	604
BseXI	GCAGC	2 cut(s)	447, 509
Bsh1236I	CGCG	1 cut(s)	59
BshFI	GGCC	1 cut(s)	400
BslFI	GGGAC	1 cut(s)	629
BslI	CCNNNNNNNGG	2 cut(s)	256, 277
BsmFI	GGGAC	1 cut(s)	629
BsnI	GGCC	1 cut(s)	400
Bsp119I	TTCGAA	1 cut(s)	382
Bsp1407I	TGTACA	1 cut(s)	568
Bsp143I	GATC	5 cut(s)	54, 109, 150, 321, 584
Bsp68I	TCGCGA	1 cut(s)	59
BspACI	CCGC	1 cut(s)	413
BspANI	GGCC	1 cut(s)	400
BspCNI	CTCAG	3 cut(s)	478, 553, 563
BspFNI	CGCG	1 cut(s)	59
BspQI	GCTCTTC	1 cut(s)	251
BspT104I	TTCGAA	1 cut(s)	382
BsrDI	GCAATG	1 cut(s)	16
BsrGI	TGTACA	1 cut(s)	568
BssECI	CCNNGG	1 cut(s)	395
BssMI	GATC	5 cut(s)	54, 109, 150, 321, 584
Bst2UI	CCWGG	1 cut(s)	396
Bst6I	CTCTTC	1 cut(s)	251
BstAUI	TGTACA	1 cut(s)	568
BstBI	TTCGAA	1 cut(s)	382
BstDEI	CTNAG	4 cut(s)	346, 465, 550, 561
BstF5I	GGATG	3 cut(s)	324, 516, 605
BstFNI	CGCG	1 cut(s)	59
BstKTI	GATC	5 cut(s)	57, 112, 153, 324, 587
BstMBI	GATC	5 cut(s)	54, 109, 150, 321, 584
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstNI	CCWGG	1 cut(s)	396
BstNSI	RCATGY	1 cut(s)	419
BstSCI	CCNGG	1 cut(s)	394
BstUI	CGCG	1 cut(s)	59
BstV1I	GCAGC	2 cut(s)	447, 509
Bsu36I	CCTNAGG	2 cut(s)	465, 550
BsuRI	GGCC	1 cut(s)	400
BtgZI	GCGATG	1 cut(s)	147
BtsCI	GGATG	3 cut(s)	324, 516, 605
BtuMI	TCGCGA	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	398
CseI	GACGC	1 cut(s)	503
Csp6I	GTAC	3 cut(s)	331, 556, 569
CviAII	CATG	3 cut(s)	416, 612, 644
CviQI	GTAC	3 cut(s)	331, 556, 569
DdeI	CTNAG	4 cut(s)	346, 465, 550, 561
DpnI	GATC	5 cut(s)	56, 111, 152, 323, 586
DpnII	GATC	5 cut(s)	54, 109, 150, 321, 584
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
Eco81I	CCTNAGG	2 cut(s)	465, 550
EcoO109I	RGGNCCY	1 cut(s)	398
EcoRII	CCWGG	1 cut(s)	394
FaeI	CATG	3 cut(s)	419, 615, 647
FaqI	GGGAC	1 cut(s)	629
FatI	CATG	3 cut(s)	415, 611, 643
FbaI	TGATCA	2 cut(s)	109, 321
Fnu4HI	GCNGC	2 cut(s)	461, 498
FokI	GGATG	3 cut(s)	331, 523, 592
Fsp4HI	GCNGC	2 cut(s)	461, 498
FspBI	CTAG	1 cut(s)	639
GluI	GCNGC	2 cut(s)	461, 498
HaeIII	GGCC	1 cut(s)	400
HgaI	GACGC	1 cut(s)	503
Hin1II	CATG	3 cut(s)	419, 615, 647
HindIII	AAGCTT	2 cut(s)	63, 339
HinfI	GANTC	1 cut(s)	373
Hpy188I	TCNGA	3 cut(s)	43, 150, 562
Hpy188III	TCNNGA	4 cut(s)	58, 113, 154, 211
Hpy99I	CGWCG	1 cut(s)	497
HpyAV	CCTTC	1 cut(s)	309
HpyCH4V	TGCA	1 cut(s)	605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	4 cut(s)	346, 465, 550, 561
Hsp92II	CATG	3 cut(s)	419, 615, 647
Ksp22I	TGATCA	2 cut(s)	109, 321
Kzo9I	GATC	5 cut(s)	54, 109, 150, 321, 584
LguI	GCTCTTC	1 cut(s)	251
LmnI	GCTCC	1 cut(s)	505
LpnPI	CCDG	6 cut(s)	77, 381, 408, 452, 492, 537
Lsp1109I	GCAGC	2 cut(s)	447, 509
LweI	GCATC	3 cut(s)	204, 501, 614
MaeI	CTAG	1 cut(s)	639
MalI	GATC	5 cut(s)	56, 111, 152, 323, 586
MboI	GATC	5 cut(s)	54, 109, 150, 321, 584
MboII	GAAGA	4 cut(s)	77, 149, 238, 490
MluCI	AATT	2 cut(s)	429, 599
MnlI	CCTC	7 cut(s)	24, 211, 229, 357, 474, 559, 582
MseI	TTAA	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	610
MspR9I	CCNGG	1 cut(s)	396
MvaI	CCWGG	1 cut(s)	396
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	1 cut(s)	347
NdeII	GATC	5 cut(s)	54, 109, 150, 321, 584
NlaIII	CATG	3 cut(s)	419, 615, 647
NruI	TCGCGA	1 cut(s)	59
NspI	RCATGY	1 cut(s)	419
NspV	TTCGAA	1 cut(s)	382
PciSI	GCTCTTC	1 cut(s)	251
PfeI	GAWTC	1 cut(s)	373
PflMI	CCANNNNNTGG	1 cut(s)	277
PkrI	GCNGC	2 cut(s)	462, 499
Psp6I	CCWGG	1 cut(s)	394
PspGI	CCWGG	1 cut(s)	394
PspPI	GGNCC	1 cut(s)	398
RruI	TCGCGA	1 cut(s)	59
RsaI	GTAC	3 cut(s)	332, 557, 570
RsaNI	GTAC	3 cut(s)	331, 556, 569
RseI	CAYNNNNRTG	1 cut(s)	610
SapI	GCTCTTC	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	2 cut(s)	461, 498
Sau3AI	GATC	5 cut(s)	54, 109, 150, 321, 584
Sau96I	GGNCC	1 cut(s)	398
ScrFI	CCNGG	1 cut(s)	396
SfaNI	GCATC	3 cut(s)	204, 501, 614
SfuI	TTCGAA	1 cut(s)	382
SmiMI	CAYNNNNRTG	1 cut(s)	610
Sse9I	AATT	2 cut(s)	429, 599
SsiI	CCGC	1 cut(s)	413
SspMI	CTAG	1 cut(s)	639
StyD4I	CCNGG	1 cut(s)	394
TaqI	TCGA	6 cut(s)	153, 237, 382, 390, 492, 587
TasI	AATT	2 cut(s)	429, 599
TatI	WGTACW	1 cut(s)	568
TfiI	GAWTC	1 cut(s)	373
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TseI	GCWGC	2 cut(s)	460, 497
TspDTI	ATGAA	4 cut(s)	77, 150, 152, 437
Van91I	CCANNNNNTGG	1 cut(s)	277
XapI	RAATTY	2 cut(s)	429, 599
XceI	RCATGY	1 cut(s)	419
XspI	CTAG	1 cut(s)	639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.