Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001503

Physical Location & Seq

Genomic Coordinates Reverse (-)

18968623 .. 18968931

Gene Structure 309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023152

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGTATTTGCTAAGCTTGACGGATGTGTTGATCACAAGCTCATGGTCGACTTTTGGTTATGTGGCGCAGAGTCTAGGCGGGCTGACGCCATGGATACTCTACAAACCGGAGAATAGGACGGCCTCTGACCCTGCTTGTAAGCGAGCAATGTCAATGGAGCCTTGCTTTCACGCACCTACCTTCTATGATTGCAAGGCCAAAACAGTAGTTGACACAGGTGCACTAGTTCCTCATGTGAGGCATTGTGAGGATATGAGTTGGGGTCTTAAATTGATTGATCCATCTGATGAGTTGTTGGTATCATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008417 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009969 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0036065 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0070085 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XG_FTase

Protein Analysis

103

Amino Acids

11.34

Weight (kDa)

5.42

Isoelectric Point (pI)

50.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XG_FTase	PF03254	1 - 65	9.4e-31	Xyloglucan fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03220
fragaria_vesca	FvH4_4g30950 FvH4_5g14640
malus_domestica	MD00G1081500.v1.1 MD14G1203600.v1.1 MD16G1068500.v1.1 MD16G1068600.v1.1 MD16G1068700.v1.1
prunus_persica	Prupe.1G278500_v2.0.a1 Prupe.5G196900_v2.0.a1
pyrus_communis	pycom14g16840 pycom16g05990 pycom16g06000
rosa_chinensis	RchiOBHm_Chr3g0485401 RchiOBHm_Chr3g0485411 RchiOBHm_Chr4g0439291 RchiOBHm_Chr4g0439301 RchiOBHm_Chr7g0181851
rosa_laevigata	RLG00000005169 RLG00000006282 RLG00000006284 RLG00000023152
rosa_multiflora	Rmu_co8397081.1_g000001 Rmu_sc0006598.1_g000004 Rmu_sc0006598.1_g000006 Rmu_sc0007912.1_g000001 Rmu_sc0021327.1_g000004 Rmu_ssc0000171.1_g000019
rosa_roxburghii	Rroxscaffold_3G00271700 Rroxscaffold_5G00380250
rosa_rugosa	Rorug04G0317200 Rorug04G0317200 Rorug06G0444400
rosa_samantha	Rh4AG368000 Rh4AG368100 Rh4BG379900 Rh4BG380000 Rh4CG394100 Rh4CG394200 Rh4CG394300 Rh4DG374300 Rh4DG374400 Rh7AG046700 Rh7BG046300 Rh7CG046800 Rh7DG045900
rosa_wichuraiana	Rw0G005600 Rw0G011610 Rw3G023710 Rw5G028570 Rw7G003860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	307
AccI	GTMKAC	1 cut(s)	47
AciI	CCGC	1 cut(s)	78
AclWI	GGATC	1 cut(s)	272
AcyI	GRCGYC	1 cut(s)	86
AhlI	ACTAGT	1 cut(s)	223
AluBI	AGCT	2 cut(s)	15, 39
AluI	AGCT	2 cut(s)	15, 39
Alw21I	GWGCWC	1 cut(s)	223
Alw44I	GTGCAC	1 cut(s)	219
AlwI	GGATC	1 cut(s)	272
AoxI	GGCC	2 cut(s)	120, 195
ApaLI	GTGCAC	1 cut(s)	219
AspLEI	GCGC	1 cut(s)	67
BaeGI	GKGCMC	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	223
BccI	CCATC	1 cut(s)	289
BceAI	ACGGC	1 cut(s)	135
BciVI	GTATCC	1 cut(s)	87
BclI	TGATCA	1 cut(s)	30
BcuI	ACTAGT	1 cut(s)	223
BfaI	CTAG	2 cut(s)	74, 224
BfuI	GTATCC	1 cut(s)	87
BlpI	GCTNAGC	1 cut(s)	11
BmiI	GGNNCC	1 cut(s)	159
Bpu1102I	GCTNAGC	1 cut(s)	11
BsaHI	GRCGYC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	89
BsaWI	WCCGGW	1 cut(s)	106
Bse3DI	GCAATG	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	89
BseGI	GGATG	1 cut(s)	28
BseMI	GCAATG	1 cut(s)	153
BseSI	GKGCMC	1 cut(s)	223
BshFI	GGCC	2 cut(s)	122, 197
BsiHKAI	GWGCWC	1 cut(s)	223
BsiSI	CCGG	1 cut(s)	107
BsnI	GGCC	2 cut(s)	122, 197
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	2 cut(s)	30, 277
Bsp1720I	GCTNAGC	1 cut(s)	11
Bsp19I	CCATGG	1 cut(s)	89
BspACI	CCGC	1 cut(s)	78
BspANI	GGCC	2 cut(s)	122, 197
BspLI	GGNNCC	1 cut(s)	159
BspPI	GGATC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	153
BssECI	CCNNGG	1 cut(s)	89
BssMI	GATC	2 cut(s)	30, 277
BssNI	GRCGYC	1 cut(s)	86
BssT1I	CCWWGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	205
BstACI	GRCGYC	1 cut(s)	86
BstC8I	GCNNGC	2 cut(s)	80, 144
BstDEI	CTNAG	1 cut(s)	11
BstDSI	CCRYGG	1 cut(s)	89
BstF5I	GGATG	1 cut(s)	28
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	2 cut(s)	33, 280
BstMBI	GATC	2 cut(s)	30, 277
BstSLI	GKGCMC	1 cut(s)	223
BsuI	GTATCC	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	122, 197
BtgI	CCRYGG	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	28
Cac8I	GCNNGC	2 cut(s)	80, 144
CfoI	GCGC	1 cut(s)	67
CseI	GACGC	1 cut(s)	94
CviAII	CATG	3 cut(s)	42, 90, 233
CviJI	RGCY	6 cut(s)	15, 39, 82, 122, 160, 197
CviKI_1	RGCY	6 cut(s)	15, 39, 82, 122, 160, 197
DdeI	CTNAG	1 cut(s)	11
DpnI	GATC	2 cut(s)	32, 279
DpnII	GATC	2 cut(s)	30, 277
Eco130I	CCWWGG	1 cut(s)	89
EcoT14I	CCWWGG	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	89
FaeI	CATG	3 cut(s)	45, 93, 236
FaiI	YATR	7 cut(s)	43, 60, 91, 186, 234, 254, 307
FatI	CATG	3 cut(s)	41, 89, 232
FauI	CCCGC	1 cut(s)	71
FbaI	TGATCA	1 cut(s)	30
FblI	GTMKAC	1 cut(s)	47
FokI	GGATG	1 cut(s)	35
FspBI	CTAG	2 cut(s)	74, 224
GlaI	GCGC	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	122, 197
HapII	CCGG	1 cut(s)	107
HgaI	GACGC	1 cut(s)	94
HhaI	GCGC	1 cut(s)	67
Hin1I	GRCGYC	1 cut(s)	86
Hin1II	CATG	3 cut(s)	45, 93, 236
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HincII	GTYRAC	2 cut(s)	48, 211
HindII	GTYRAC	2 cut(s)	48, 211
HindIII	AAGCTT	1 cut(s)	13
HinfI	GANTC	1 cut(s)	70
HpaII	CCGG	1 cut(s)	107
Hpy166II	GTNNAC	3 cut(s)	48, 211, 221
Hpy188I	TCNGA	2 cut(s)	127, 286
Hpy8I	GTNNAC	3 cut(s)	48, 211, 221
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	2 cut(s)	192, 221
HpyF3I	CTNAG	1 cut(s)	11
Hsp92I	GRCGYC	1 cut(s)	86
Hsp92II	CATG	3 cut(s)	45, 93, 236
HspAI	GCGC	1 cut(s)	65
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	2 cut(s)	30, 277
LmnI	GCTCC	1 cut(s)	157
LpnPI	CCDG	3 cut(s)	120, 144, 201
MaeI	CTAG	2 cut(s)	74, 224
MalI	GATC	2 cut(s)	32, 279
MboI	GATC	2 cut(s)	30, 277
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	1 cut(s)	269
MlyI	GAGTC	1 cut(s)	79
MnlI	CCTC	4 cut(s)	133, 231, 240, 241
MseI	TTAA	1 cut(s)	267
MspI	CCGG	1 cut(s)	107
NcoI	CCATGG	1 cut(s)	89
NdeII	GATC	2 cut(s)	30, 277
NlaIII	CATG	3 cut(s)	45, 93, 236
NlaIV	GGNNCC	1 cut(s)	159
PleI	GAGTC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	78
PsiI	TTATAA	1 cut(s)	307
PspN4I	GGNNCC	1 cut(s)	159
SalI	GTCGAC	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	267
Sau3AI	GATC	2 cut(s)	30, 277
SchI	GAGTC	1 cut(s)	79
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	5 cut(s)	17, 41, 178, 182, 220
SpeI	ACTAGT	1 cut(s)	223
Sse9I	AATT	1 cut(s)	269
SsiI	CCGC	1 cut(s)	78
SspMI	CTAG	2 cut(s)	74, 224
StyI	CCWWGG	1 cut(s)	89
TaaI	ACNGT	1 cut(s)	205
TaqI	TCGA	1 cut(s)	47
TasI	AATT	1 cut(s)	269
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TspGWI	ACGGA	1 cut(s)	35
VneI	GTGCAC	1 cut(s)	219
XmiI	GTMKAC	1 cut(s)	47
XspI	CTAG	2 cut(s)	74, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.