Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001503

Physical Location & Seq

Genomic Coordinates Forward (+)

4854709 .. 4854897

Gene Structure 189 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1068600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGTATCTGCTCAGTCTGTGCGACGTGTTGGTAACAAGTGCACGGTCAACTTTCGGGTACGTGGCTCAAGGTCTTGGAGGTCTGAAACCATGGATTCGGTACGAGCCGGAGAATCGGTCAACGCCGGATCCGCCTTGCGGTCGGGTCAGATCGATGAAGCCTTGCTTTCATGATCCCCCATTTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008417 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009969 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0036065 GO:0042546 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046983 GO:0070085 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XG_FTase

Protein Analysis

63

Amino Acids

6.97

Weight (kDa)

8.59

Isoelectric Point (pI)

44.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XG_FTase	PF03254	1 - 61	1.4e-26	Xyloglucan fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03220
fragaria_vesca	FvH4_4g30950 FvH4_5g14640
malus_domestica	MD00G1081500.v1.1 MD14G1203600.v1.1 MD16G1068500.v1.1 MD16G1068600.v1.1 MD16G1068700.v1.1
prunus_persica	Prupe.1G278500_v2.0.a1 Prupe.5G196900_v2.0.a1
pyrus_communis	pycom14g16840 pycom16g05990 pycom16g06000
rosa_chinensis	RchiOBHm_Chr3g0485401 RchiOBHm_Chr3g0485411 RchiOBHm_Chr4g0439291 RchiOBHm_Chr4g0439301 RchiOBHm_Chr7g0181851
rosa_laevigata	RLG00000005169 RLG00000006282 RLG00000006284 RLG00000023152
rosa_multiflora	Rmu_co8397081.1_g000001 Rmu_sc0006598.1_g000004 Rmu_sc0006598.1_g000006 Rmu_sc0007912.1_g000001 Rmu_sc0021327.1_g000004 Rmu_ssc0000171.1_g000019
rosa_roxburghii	Rroxscaffold_3G00271700 Rroxscaffold_5G00380250
rosa_rugosa	Rorug04G0317200 Rorug04G0317200 Rorug06G0444400
rosa_samantha	Rh4AG368000 Rh4AG368100 Rh4BG379900 Rh4BG380000 Rh4CG394100 Rh4CG394200 Rh4CG394300 Rh4DG374300 Rh4DG374400 Rh7AG046700 Rh7BG046300 Rh7CG046800 Rh7DG045900
rosa_wichuraiana	Rw0G005600 Rw0G011610 Rw3G023710 Rw5G028570 Rw7G003860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	131, 138
AclWI	GGATC	3 cut(s)	122, 135, 167
AfaI	GTAC	2 cut(s)	59, 101
AfiI	CCNNNNNNNGG	1 cut(s)	137
AflIII	ACRYGT	1 cut(s)	24
AjiI	CACGTC	1 cut(s)	25
Alw21I	GWGCWC	1 cut(s)	43
Alw44I	GTGCAC	1 cut(s)	39
AlwI	GGATC	3 cut(s)	122, 135, 167
ApaLI	GTGCAC	1 cut(s)	39
BaeGI	GKGCMC	1 cut(s)	43
BamHI	GGATCC	1 cut(s)	127
Bbv12I	GWGCWC	1 cut(s)	43
BmgBI	CACGTC	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	51
Bsa29I	ATCGAT	1 cut(s)	152
BsaAI	YACGTR	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	89
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
BseCI	ATCGAT	1 cut(s)	152
BseDI	CCNNGG	1 cut(s)	89
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMII	CTCAG	1 cut(s)	25
BseSI	GKGCMC	1 cut(s)	43
Bsh1285I	CGRYCG	1 cut(s)	142
BshVI	ATCGAT	1 cut(s)	152
BsiEI	CGRYCG	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	43
BsiSI	CCGG	2 cut(s)	107, 125
BslI	CCNNNNNNNGG	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	3 cut(s)	127, 149, 172
Bsp19I	CCATGG	1 cut(s)	89
BspACI	CCGC	2 cut(s)	131, 138
BspCNI	CTCAG	1 cut(s)	24
BspDI	ATCGAT	1 cut(s)	152
BspHI	TCATGA	1 cut(s)	169
BspLI	GGNNCC	1 cut(s)	129
BspPI	GGATC	3 cut(s)	122, 135, 167
BssECI	CCNNGG	1 cut(s)	89
BssMI	GATC	3 cut(s)	127, 149, 172
BssT1I	CCWWGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	45
BstBAI	YACGTR	1 cut(s)	61
BstDEI	CTNAG	1 cut(s)	11
BstDSI	CCRYGG	1 cut(s)	89
BstKTI	GATC	3 cut(s)	130, 152, 175
BstMBI	GATC	3 cut(s)	127, 149, 172
BstMCI	CGRYCG	1 cut(s)	142
BstMWI	GCNNNNNNNGC	1 cut(s)	130
BstSLI	GKGCMC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
Bsu15I	ATCGAT	1 cut(s)	152
BsuTUI	ATCGAT	1 cut(s)	152
BtgI	CCRYGG	1 cut(s)	89
BtrI	CACGTC	1 cut(s)	25
CciI	TCATGA	1 cut(s)	169
ClaI	ATCGAT	1 cut(s)	152
Csp6I	GTAC	2 cut(s)	58, 100
CviAII	CATG	2 cut(s)	90, 170
CviJI	RGCY	3 cut(s)	65, 106, 160
CviKI_1	RGCY	3 cut(s)	65, 106, 160
CviQI	GTAC	2 cut(s)	58, 100
DdeI	CTNAG	1 cut(s)	11
DpnI	GATC	3 cut(s)	129, 151, 174
DpnII	GATC	3 cut(s)	127, 149, 172
EciI	GGCGGA	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	89
EcoT14I	CCWWGG	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	89
FaeI	CATG	2 cut(s)	93, 173
FaiI	YATR	3 cut(s)	91, 171, 187
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FatI	CATG	2 cut(s)	89, 169
HapII	CCGG	2 cut(s)	107, 125
Hin1II	CATG	2 cut(s)	93, 173
HincII	GTYRAC	2 cut(s)	48, 120
HindII	GTYRAC	2 cut(s)	48, 120
HinfI	GANTC	2 cut(s)	94, 112
HpaII	CCGG	2 cut(s)	107, 125
Hpy166II	GTNNAC	3 cut(s)	41, 48, 120
Hpy188I	TCNGA	2 cut(s)	84, 149
Hpy188III	TCNNGA	1 cut(s)	170
Hpy8I	GTNNAC	3 cut(s)	41, 48, 120
Hpy99I	CGWCG	1 cut(s)	26
HpyCH4III	ACNGT	1 cut(s)	45
HpyCH4IV	ACGT	2 cut(s)	24, 60
HpyCH4V	TGCA	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	1 cut(s)	130
HpyF3I	CTNAG	1 cut(s)	11
HpySE526I	ACGT	2 cut(s)	24, 60
Hsp92II	CATG	2 cut(s)	93, 173
Kzo9I	GATC	3 cut(s)	127, 149, 172
LpnPI	CCDG	2 cut(s)	120, 138
MaeII	ACGT	2 cut(s)	24, 60
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	3 cut(s)	129, 151, 174
MboI	GATC	3 cut(s)	127, 149, 172
MflI	RGATCY	1 cut(s)	127
MhlI	GDGCHC	1 cut(s)	43
MnlI	CCTC	1 cut(s)	71
MslI	CAYNNNNRTG	1 cut(s)	184
MspI	CCGG	2 cut(s)	107, 125
MwoI	GCNNNNNNNGC	1 cut(s)	130
NcoI	CCATGG	1 cut(s)	89
NdeII	GATC	3 cut(s)	127, 149, 172
NlaIII	CATG	2 cut(s)	93, 173
NlaIV	GGNNCC	1 cut(s)	129
PagI	TCATGA	1 cut(s)	169
PfeI	GAWTC	2 cut(s)	94, 112
Ppu21I	YACGTR	1 cut(s)	61
PspN4I	GGNNCC	1 cut(s)	129
PsuI	RGATCY	1 cut(s)	127
RsaI	GTAC	2 cut(s)	59, 101
RsaNI	GTAC	2 cut(s)	58, 100
RseI	CAYNNNNRTG	1 cut(s)	184
Sau3AI	GATC	3 cut(s)	127, 149, 172
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	4 cut(s)	27, 63, 73, 82
SmiMI	CAYNNNNRTG	1 cut(s)	184
SmlI	CTYRAG	1 cut(s)	66
SmoI	CTYRAG	1 cut(s)	66
SsiI	CCGC	2 cut(s)	131, 138
StyI	CCWWGG	1 cut(s)	89
TaaI	ACNGT	1 cut(s)	45
TaiI	ACGT	2 cut(s)	27, 63
TaqI	TCGA	1 cut(s)	152
TaqII	GACCGA	1 cut(s)	105
TfiI	GAWTC	2 cut(s)	94, 112
TspDTI	ATGAA	2 cut(s)	158, 170
VneI	GTGCAC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.