Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001503

Physical Location & Seq

Genomic Coordinates Forward (+)

64410622 .. 64411590

Gene Structure 969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG394300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGTTGAAAAAGACTAGTAATTCATCGGAATTGTCACTACCATCGTCGTACGTATATCTCCATCTAGGCCATGATTATGATCAGCAAGACAAGTTGTTTTTCTGTGATGAAGAGCAGAGTCATCTTGGGAAAGTAGACTGGTTGGTTATGAAAACGGATAACTACTTTGTCCCATCACTTTTCTTGATGCCATCTTTTGAGCAAGAACTTAACAAGTTGTTCCCTGAAAGAGAAACTGTTTTCCACCACTTGGGTAGGTATCTCTTCCACCCTTCAAATCATGTATGGGGGCTAATCACAAGGTACTACCAAGCTTCTTTGGCAAAGGCCGACGAGATGGTTGGGATTCAAGTAAGAACTTTCGAGCCGGCTGGGCCTGGTCCTTTTAAGCATGTGATGGATCAAATTTTAGCTTGTGTTTTTAGTAAGAAATTGTTGCCTCGAGTGGATGAGAACAAGCCTATTGTGGACTTCAGTTCATCGTCAGGGACCCCGAAGTTGAAATCGGTACTGATGACTTCTTTAAAACCAGATTACTCTGAGAATTTGAGGAGTATGTATTGGGAACATCCAACTGTGACTGGGGACTTAATTGGGGTTTTCCAACCCAGCCATGAAGGAGAGCAAAGGACTGATGATAAACTGCATGACAGAAAAGCCTTGGCCGAAATGTTTCTGCTCAGTTTCTCTGATGTGTTGGTCACAAGTGCATGGTCAACATTTGGGTATGTGGCTCAAGGTCTTGGAGGTTTGAAACCATGGATTCTCTTCAAGCCGGAAAACCAAACAGTCCCGAATCCGCCTTGTCGTCGGCTCCAATCGATGGAGCCTTGTTTTCACGCTCCACCATTGTGGGACTGCAAGGAGAAAAGAGGAACTGATACAGGTGCAATAGTACCTCATGTGAGGCATTGTGAGGATATCAGCTGGGGCCTTCAGCTAATTGATACTCATAATGATCACTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008417 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009969 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0036065 GO:0042546 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046983 GO:0070085 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XG_FTase

Protein Analysis

322

Amino Acids

36.89

Weight (kDa)

6.04

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XG_FTase	PF03254	11 - 288	1e-126	Xyloglucan fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03220
fragaria_vesca	FvH4_4g30950 FvH4_5g14640
malus_domestica	MD00G1081500.v1.1 MD14G1203600.v1.1 MD16G1068500.v1.1 MD16G1068600.v1.1 MD16G1068700.v1.1
prunus_persica	Prupe.1G278500_v2.0.a1 Prupe.5G196900_v2.0.a1
pyrus_communis	pycom14g16840 pycom16g05990 pycom16g06000
rosa_chinensis	RchiOBHm_Chr3g0485401 RchiOBHm_Chr3g0485411 RchiOBHm_Chr4g0439291 RchiOBHm_Chr4g0439301 RchiOBHm_Chr7g0181851
rosa_laevigata	RLG00000005169 RLG00000006282 RLG00000006284 RLG00000023152
rosa_multiflora	Rmu_co8397081.1_g000001 Rmu_sc0006598.1_g000004 Rmu_sc0006598.1_g000006 Rmu_sc0007912.1_g000001 Rmu_sc0021327.1_g000004 Rmu_ssc0000171.1_g000019
rosa_roxburghii	Rroxscaffold_3G00271700 Rroxscaffold_5G00380250
rosa_rugosa	Rorug04G0317200 Rorug04G0317200 Rorug06G0444400
rosa_samantha	Rh4AG368000 Rh4AG368100 Rh4BG379900 Rh4BG380000 Rh4CG394100 Rh4CG394200 Rh4CG394300 Rh4DG374300 Rh4DG374400 Rh7AG046700 Rh7BG046300 Rh7CG046800 Rh7DG045900
rosa_wichuraiana	Rw0G005600 Rw0G011610 Rw3G023710 Rw5G028570 Rw7G003860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	250, 823
AccI	GTMKAC	1 cut(s)	135
AciI	CCGC	1 cut(s)	800
AclWI	GGATC	1 cut(s)	408
AcoI	YGGCCR	1 cut(s)	663
AcsI	RAATTY	2 cut(s)	405, 544
AcuI	CTGAAG	2 cut(s)	457, 920
AfaI	GTAC	4 cut(s)	50, 305, 510, 897
AfiI	CCNNNNNNNGG	2 cut(s)	250, 823
AgsI	TTSAA	6 cut(s)	7, 276, 350, 502, 754, 772
AhlI	ACTAGT	1 cut(s)	14
AjnI	CCWGG	1 cut(s)	376
AleI	CACNNNNGTG	1 cut(s)	850
AluBI	AGCT	4 cut(s)	314, 413, 927, 940
AluI	AGCT	4 cut(s)	314, 413, 927, 940
AlwI	GGATC	1 cut(s)	408
Ama87I	CYCGRG	1 cut(s)	441
AoxI	GGCC	5 cut(s)	67, 327, 374, 663, 931
ApoI	RAATTY	2 cut(s)	405, 544
Asp700I	GAANNNNTTC	1 cut(s)	672
AspS9I	GGNCC	4 cut(s)	374, 380, 489, 931
AvaI	CYCGRG	1 cut(s)	441
AvaII	GGWCC	2 cut(s)	380, 489
BccI	CCATC	7 cut(s)	49, 69, 181, 199, 331, 391, 817
BciT130I	CCWGG	1 cut(s)	378
BclI	TGATCA	2 cut(s)	79, 958
BcuI	ACTAGT	1 cut(s)	14
BfaI	CTAG	2 cut(s)	15, 65
BglI	GCCNNNNNGGC	1 cut(s)	373
Bme1390I	CCNGG	1 cut(s)	378
Bme18I	GGWCC	2 cut(s)	380, 489
BmeT110I	CYCGRG	1 cut(s)	441
BmgT120I	GGNCC	4 cut(s)	374, 380, 489, 931
BmiI	GGNNCC	5 cut(s)	490, 491, 815, 828, 932
BmrFI	CCNGG	1 cut(s)	378
BmrI	ACTGGG	1 cut(s)	591
BmsI	GCATC	1 cut(s)	177
BmuI	ACTGGG	1 cut(s)	591
BpuEI	CTTGAG	1 cut(s)	720
Bsa29I	ATCGAT	1 cut(s)	821
BsaAI	YACGTR	1 cut(s)	52
BsaBI	GATNNNNATC	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	660, 758
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 823
Bse118I	RCCGGY	1 cut(s)	367
Bse1I	ACTGG	2 cut(s)	143, 586
Bse8I	GATNNNNATC	1 cut(s)	78
BseBI	CCWGG	1 cut(s)	378
BseCI	ATCGAT	1 cut(s)	821
BseDI	CCNNGG	2 cut(s)	660, 758
BseGI	GGATG	2 cut(s)	454, 568
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	2 cut(s)	250, 823
BseMII	CTCAG	2 cut(s)	531, 694
BseNI	ACTGG	2 cut(s)	143, 586
BseRI	GAGGAG	1 cut(s)	565
BseYI	CCCAGC	3 cut(s)	371, 608, 927
BshFI	GGCC	5 cut(s)	69, 329, 376, 665, 933
BshVI	ATCGAT	1 cut(s)	821
BsiHKCI	CYCGRG	1 cut(s)	441
BsiSI	CCGG	2 cut(s)	368, 776
BsiWI	CGTACG	1 cut(s)	48
BslFI	GGGAC	5 cut(s)	155, 502, 599, 776, 869
BslI	CCNNNNNNNGG	2 cut(s)	250, 823
BsmFI	GGGAC	5 cut(s)	155, 502, 599, 776, 869
BsnI	GGCC	5 cut(s)	69, 329, 376, 665, 933
BsoBI	CYCGRG	1 cut(s)	441
Bsp143I	GATC	3 cut(s)	79, 400, 958
Bsp19I	CCATGG	1 cut(s)	758
BspACI	CCGC	1 cut(s)	800
BspANI	GGCC	5 cut(s)	69, 329, 376, 665, 933
BspCNI	CTCAG	2 cut(s)	532, 693
BspDI	ATCGAT	1 cut(s)	821
BspLI	GGNNCC	5 cut(s)	490, 491, 815, 828, 932
BspPI	GGATC	1 cut(s)	408
BspQI	GCTCTTC	1 cut(s)	105
BsrFI	RCCGGY	1 cut(s)	367
BsrI	ACTGG	2 cut(s)	143, 586
BssAI	RCCGGY	1 cut(s)	367
BssECI	CCNNGG	2 cut(s)	660, 758
BssMI	GATC	3 cut(s)	79, 400, 958
BssT1I	CCWWGG	2 cut(s)	660, 758
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	3 cut(s)	238, 577, 790
Bst6I	CTCTTC	3 cut(s)	105, 269, 773
BstBAI	YACGTR	1 cut(s)	52
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	2 cut(s)	540, 680
BstDSI	CCRYGG	1 cut(s)	758
BstF5I	GGATG	2 cut(s)	454, 568
BstKTI	GATC	3 cut(s)	82, 403, 961
BstMBI	GATC	3 cut(s)	79, 400, 958
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 373
BstNI	CCWGG	1 cut(s)	378
BstNSI	RCATGY	1 cut(s)	395
BstSCI	CCNGG	1 cut(s)	376
BstSNI	TACGTA	1 cut(s)	52
BstXI	CCANNNNNNTGG	1 cut(s)	852
Bsu15I	ATCGAT	1 cut(s)	821
BsuRI	GGCC	5 cut(s)	69, 329, 376, 665, 933
BsuTUI	ATCGAT	1 cut(s)	821
BtgI	CCRYGG	1 cut(s)	758
BtsCI	GGATG	2 cut(s)	454, 568
Cac8I	GCNNGC	1 cut(s)	369
Cfr10I	RCCGGY	1 cut(s)	367
Cfr13I	GGNCC	4 cut(s)	374, 380, 489, 931
ClaI	ATCGAT	1 cut(s)	821
Csp6I	GTAC	4 cut(s)	49, 304, 509, 896
CviAII	CATG	8 cut(s)	71, 281, 392, 614, 647, 711, 759, 902
CviQI	GTAC	4 cut(s)	49, 304, 509, 896
DdeI	CTNAG	2 cut(s)	540, 680
DpnI	GATC	3 cut(s)	81, 402, 960
DpnII	GATC	3 cut(s)	79, 400, 958
DraI	TTTAAA	1 cut(s)	525
EaeI	YGGCCR	1 cut(s)	663
Eam1104I	CTCTTC	3 cut(s)	105, 269, 773
EarI	CTCTTC	3 cut(s)	105, 269, 773
EciI	GGCGGA	1 cut(s)	789
Eco105I	TACGTA	1 cut(s)	52
Eco130I	CCWWGG	2 cut(s)	660, 758
Eco32I	GATATC	1 cut(s)	922
Eco47I	GGWCC	2 cut(s)	380, 489
Eco57I	CTGAAG	2 cut(s)	457, 920
Eco88I	CYCGRG	1 cut(s)	441
EcoO109I	RGGNCCY	2 cut(s)	489, 931
EcoRII	CCWGG	1 cut(s)	376
EcoRV	GATATC	1 cut(s)	922
EcoT14I	CCWWGG	2 cut(s)	660, 758
ErhI	CCWWGG	2 cut(s)	660, 758
FaeI	CATG	8 cut(s)	74, 284, 395, 617, 650, 714, 762, 905
FaqI	GGGAC	5 cut(s)	155, 502, 599, 776, 869
FatI	CATG	8 cut(s)	70, 280, 391, 613, 646, 710, 758, 901
FbaI	TGATCA	2 cut(s)	79, 958
FblI	GTMKAC	1 cut(s)	135
FokI	GGATG	2 cut(s)	461, 555
FspBI	CTAG	2 cut(s)	15, 65
GsaI	CCCAGC	3 cut(s)	375, 612, 931
HaeIII	GGCC	5 cut(s)	69, 329, 376, 665, 933
HapII	CCGG	2 cut(s)	368, 776
Hin1II	CATG	8 cut(s)	74, 284, 395, 617, 650, 714, 762, 905
HincII	GTYRAC	1 cut(s)	717
HindII	GTYRAC	1 cut(s)	717
HindIII	AAGCTT	1 cut(s)	312
HinfI	GANTC	4 cut(s)	118, 346, 763, 796
HpaII	CCGG	2 cut(s)	368, 776
Hpy166II	GTNNAC	3 cut(s)	136, 469, 717
Hpy188I	TCNGA	3 cut(s)	28, 541, 691
Hpy188III	TCNNGA	2 cut(s)	184, 793
Hpy8I	GTNNAC	3 cut(s)	136, 469, 717
Hpy99I	CGWCG	3 cut(s)	49, 335, 813
HpyAV	CCTTC	3 cut(s)	282, 611, 944
HpyCH4III	ACNGT	3 cut(s)	238, 577, 790
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	4 cut(s)	646, 710, 861, 890
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 373
HpyF3I	CTNAG	2 cut(s)	540, 680
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	8 cut(s)	74, 284, 395, 617, 650, 714, 762, 905
KflI	GGGWCCC	1 cut(s)	489
KroI	GCCGGC	1 cut(s)	367
KroNI	GCCGGC	1 cut(s)	369
Ksp22I	TGATCA	2 cut(s)	79, 958
Kzo9I	GATC	3 cut(s)	79, 400, 958
LguI	GCTCTTC	1 cut(s)	105
LmnI	GCTCC	3 cut(s)	819, 826, 847
LweI	GCATC	1 cut(s)	177
MaeI	CTAG	2 cut(s)	15, 65
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	3 cut(s)	33, 577, 700
MalI	GATC	3 cut(s)	81, 402, 960
MboI	GATC	3 cut(s)	79, 400, 958
MboII	GAAGA	3 cut(s)	122, 256, 760
MluCI	AATT	7 cut(s)	19, 29, 405, 431, 544, 591, 942
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	2 cut(s)	596, 628
MnlI	CCTC	7 cut(s)	450, 543, 740, 866, 900, 909, 910
MroNI	GCCGGC	1 cut(s)	367
MroXI	GAANNNNTTC	1 cut(s)	672
MseI	TTAA	4 cut(s)	210, 387, 524, 590
MslI	CAYNNNNRTG	2 cut(s)	75, 850
MspA1I	CMGCKG	1 cut(s)	927
MspI	CCGG	2 cut(s)	368, 776
MspR9I	CCNGG	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	378
MwoI	GCNNNNNNNGC	2 cut(s)	320, 373
NaeI	GCCGGC	1 cut(s)	369
NcoI	CCATGG	1 cut(s)	758
NdeII	GATC	3 cut(s)	79, 400, 958
NgoMIV	GCCGGC	1 cut(s)	367
NlaIII	CATG	8 cut(s)	74, 284, 395, 617, 650, 714, 762, 905
NlaIV	GGNNCC	5 cut(s)	490, 491, 815, 828, 932
NmuCI	GTSAC	3 cut(s)	33, 577, 700
NspI	RCATGY	1 cut(s)	395
OliI	CACNNNNGTG	1 cut(s)	850
PaeR7I	CTCGAG	1 cut(s)	441
PciSI	GCTCTTC	1 cut(s)	105
PdiI	GCCGGC	1 cut(s)	369
PdmI	GAANNNNTTC	1 cut(s)	672
PfeI	GAWTC	3 cut(s)	346, 763, 796
Pfl23II	CGTACG	1 cut(s)	48
PflMI	CCANNNNNTGG	2 cut(s)	250, 823
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
Ppu21I	YACGTR	1 cut(s)	52
PpuMI	RGGWCCY	1 cut(s)	489
Psp5II	RGGWCCY	1 cut(s)	489
Psp6I	CCWGG	1 cut(s)	376
PspFI	CCCAGC	3 cut(s)	371, 608, 927
PspGI	CCWGG	1 cut(s)	376
PspLI	CGTACG	1 cut(s)	48
PspN4I	GGNNCC	5 cut(s)	490, 491, 815, 828, 932
PspPI	GGNCC	4 cut(s)	374, 380, 489, 931
PspPPI	RGGWCCY	1 cut(s)	489
PspXI	VCTCGAGB	1 cut(s)	441
PvuII	CAGCTG	1 cut(s)	927
RsaI	GTAC	4 cut(s)	50, 305, 510, 897
RsaNI	GTAC	4 cut(s)	49, 304, 509, 896
RseI	CAYNNNNRTG	2 cut(s)	75, 850
SapI	GCTCTTC	1 cut(s)	105
SaqAI	TTAA	4 cut(s)	210, 387, 524, 590
Sau3AI	GATC	3 cut(s)	79, 400, 958
Sau96I	GGNCC	4 cut(s)	374, 380, 489, 931
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	1 cut(s)	378
SfaNI	GCATC	1 cut(s)	177
Sfr274I	CTCGAG	1 cut(s)	441
SinI	GGWCC	2 cut(s)	380, 489
SlaI	CTCGAG	1 cut(s)	441
SmiMI	CAYNNNNRTG	2 cut(s)	75, 850
SmlI	CTYRAG	2 cut(s)	441, 735
SmoI	CTYRAG	2 cut(s)	441, 735
SnaBI	TACGTA	1 cut(s)	52
SpeI	ACTAGT	1 cut(s)	14
Sse9I	AATT	7 cut(s)	19, 29, 405, 431, 544, 591, 942
SsiI	CCGC	1 cut(s)	800
SspMI	CTAG	2 cut(s)	15, 65
StyD4I	CCNGG	1 cut(s)	376
StyI	CCWWGG	2 cut(s)	660, 758
TaaI	ACNGT	3 cut(s)	238, 577, 790
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	3 cut(s)	363, 442, 821
TasI	AATT	7 cut(s)	19, 29, 405, 431, 544, 591, 942
TfiI	GAWTC	3 cut(s)	346, 763, 796
Tru1I	TTAA	4 cut(s)	210, 387, 524, 590
Tru9I	TTAA	4 cut(s)	210, 387, 524, 590
TseFI	GTSAC	3 cut(s)	33, 577, 700
Tsp45I	GTSAC	3 cut(s)	33, 577, 700
TspDTI	ATGAA	5 cut(s)	12, 123, 164, 468, 630
TspGWI	ACGGA	1 cut(s)	170
Van91I	CCANNNNNTGG	2 cut(s)	250, 823
VpaK11BI	GGWCC	2 cut(s)	380, 489
XapI	RAATTY	2 cut(s)	405, 544
XceI	RCATGY	1 cut(s)	395
XhoI	CTCGAG	1 cut(s)	441
XmiI	GTMKAC	1 cut(s)	135
XmnI	GAANNNNTTC	1 cut(s)	672
XspI	CTAG	2 cut(s)	15, 65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.