Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001503

Physical Location & Seq

Genomic Coordinates Reverse (-)

5942877 .. 5944972

Gene Structure 2096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006284

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGTTGATTTTGGGTTTCTCGGCCTGCGTTAATAGAGGGGACTTCTCCTTCGTGACTGCACCACCATCAGTCTCTAATGCTGACGGTGACTTGCGCTTGATTACGTTCTGCCATCGTCAATTGTCTCATCACTCATCCAAATTTGGAGTCAGGTTGGTCGGAGTAGGGGGATGGAGGTGGGGGTGGGTCATCGGGTTTGAAGAGGAGAGGAGGGGAGCGGAGCGGAGAGGGATAACGAGTCGTAGAGGGCTTGTTGGGACTTTGCAAACACCCTCTCCAAATCCCAACTCATCCACCATTGCGGTTTGTGAAAGACCACCTTCATCGAATTTGGCAGATACCAATCAAGTTTATACCGGAAATCTCACCCCACAGGCCTTCTTCTTATTTTCCCTCTTCTTCGAAGTTATGAAGATCTTCATATGTGGGCCAAATACCAAACCCTACAAGACATTACTAAAACGACTCGAGGAGAAGTCTAATGAGTCCTTCACGGAAAAGACGTGCCTGACCTCTTCTGTGAAACAATTTCCACATAAATCATGGCTACTCCCCAACAGCTTCCCCATCAAAGATCAATTTTACAAGTTTGATCAGGACTCTCCTAGTCGTTTCGGGAATACGTTGAGAAAGACTAATAACCCATCAGAATTATCACTACCGTCGTCGTATATATATCTCCGTCTATACTTTGATTATGATGCTAATAACCCATCAGAATTATCACTACCGTCGTCGTACTATCAAGCTTATTTGGCAGAGGCAGACCAGAGGATTGGGATTCAAATTCGAAGTTTTGAACCGCAGGGCTACCGTCCATTTCAGCATGTAATGGACCAAATTTTAGCTTGTGCTTTCAATGAGAAATTGCTGCCTCTAGTGGAAAAGAATAAGCCCATTGTGACAACTCCTCTGAACCCAAAACTGAAATCAGTACTGATTACTTGTTTATTACCAGAATGCTATAAGAAAATGAGGAATATGTATTCGAGTGACATAATTGCGGTATTCCAGCCAAGCCATGAAAAACATCAAAAGACAAATGAAGTGCATGACAGAAAAACCTTGGCAGAAATATTGCTGCTAAGCTTTTCTGATGTGTTGGTCACAAGTGCGAAGTCTACATTTGGGTATGTGGCTCAAAGTCTTAGAGATTTGAAAATCAAACGGTCCAAAATCCGCCTTGTCGTCGGGTCATGTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008417 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009969 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0036065 GO:0042546 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046983 GO:0070085 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XG_FTase

Protein Analysis

402

Amino Acids

45.53

Weight (kDa)

9.37

Isoelectric Point (pI)

52.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XG_FTase	PF03254	245 - 387	2.7e-37	Xyloglucan fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03220
fragaria_vesca	FvH4_4g30950 FvH4_5g14640
malus_domestica	MD00G1081500.v1.1 MD14G1203600.v1.1 MD16G1068500.v1.1 MD16G1068600.v1.1 MD16G1068700.v1.1
prunus_persica	Prupe.1G278500_v2.0.a1 Prupe.5G196900_v2.0.a1
pyrus_communis	pycom14g16840 pycom16g05990 pycom16g06000
rosa_chinensis	RchiOBHm_Chr3g0485401 RchiOBHm_Chr3g0485411 RchiOBHm_Chr4g0439291 RchiOBHm_Chr4g0439301 RchiOBHm_Chr7g0181851
rosa_laevigata	RLG00000005169 RLG00000006282 RLG00000006284 RLG00000023152
rosa_multiflora	Rmu_co8397081.1_g000001 Rmu_sc0006598.1_g000004 Rmu_sc0006598.1_g000006 Rmu_sc0007912.1_g000001 Rmu_sc0021327.1_g000004 Rmu_ssc0000171.1_g000019
rosa_roxburghii	Rroxscaffold_3G00271700 Rroxscaffold_5G00380250
rosa_rugosa	Rorug04G0317200 Rorug04G0317200 Rorug06G0444400
rosa_samantha	Rh4AG368000 Rh4AG368100 Rh4BG379900 Rh4BG380000 Rh4CG394100 Rh4CG394200 Rh4CG394300 Rh4DG374300 Rh4DG374400 Rh7AG046700 Rh7BG046300 Rh7CG046800 Rh7DG045900
rosa_wichuraiana	Rw0G005600 Rw0G011610 Rw3G023710 Rw5G028570 Rw7G003860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	218, 223
AccI	GTMKAC	1 cut(s)	1121
AciI	CCGC	6 cut(s)	218, 223, 302, 803, 1004, 1180
AcsI	RAATTY	4 cut(s)	140, 328, 786, 840
AfaI	GTAC	2 cut(s)	740, 936
AgsI	TTSAA	5 cut(s)	200, 785, 800, 859, 1159
AjiI	CACGTC	1 cut(s)	504
AluBI	AGCT	4 cut(s)	561, 749, 848, 1089
AluI	AGCT	4 cut(s)	561, 749, 848, 1089
Alw26I	GTCTC	2 cut(s)	76, 129
Ama87I	CYCGRG	1 cut(s)	467
AoxI	GGCC	3 cut(s)	21, 375, 428
ApeKI	GCWGC	2 cut(s)	871, 1081
ApoI	RAATTY	4 cut(s)	140, 328, 786, 840
ArsI	GACNNNNNNTTYG	4 cut(s)	32, 64, 132, 164
Asp700I	GAANNNNTTC	1 cut(s)	416
AspLEI	GCGC	1 cut(s)	96
AspS9I	GGNCC	3 cut(s)	428, 835, 1170
AsuHPI	GGTGA	2 cut(s)	98, 358
AsuII	TTCGAA	2 cut(s)	402, 790
AvaI	CYCGRG	1 cut(s)	467
AvaII	GGWCC	2 cut(s)	835, 1170
BbvI	GCAGC	2 cut(s)	858, 1068
BccI	CCATC	6 cut(s)	73, 120, 165, 575, 652, 721
BclI	TGATCA	1 cut(s)	592
BcoDI	GTCTC	2 cut(s)	76, 129
BfaI	CTAG	2 cut(s)	606, 878
BglII	AGATCT	1 cut(s)	414
BisI	GCNGC	2 cut(s)	872, 1082
BlpI	GCTNAGC	1 cut(s)	1085
BlsI	GCNGC	2 cut(s)	873, 1083
BmcAI	AGTACT	1 cut(s)	936
Bme18I	GGWCC	2 cut(s)	835, 1170
BmeT110I	CYCGRG	1 cut(s)	467
BmgBI	CACGTC	1 cut(s)	504
BmgT120I	GGNCC	3 cut(s)	428, 835, 1170
BmsI	GCATC	1 cut(s)	691
Bpu1102I	GCTNAGC	1 cut(s)	1085
Bpu14I	TTCGAA	2 cut(s)	402, 790
BsaBI	GATNNNNATC	1 cut(s)	342
BsaJI	CCNNGG	1 cut(s)	1065
BsaWI	WCCGGW	1 cut(s)	356
BsaXI	ACNNNNNCTCC	2 cut(s)	259, 289
Bse3DI	GCAATG	1 cut(s)	297
Bse8I	GATNNNNATC	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	1065
BseGI	GGATG	3 cut(s)	134, 176, 290
BseJI	GATNNNNATC	1 cut(s)	342
BseMI	GCAATG	1 cut(s)	297
BseRI	GAGGAG	4 cut(s)	218, 223, 485, 900
BseXI	GCAGC	2 cut(s)	858, 1068
BsgI	GTGCAG	1 cut(s)	42
BshFI	GGCC	3 cut(s)	23, 377, 430
BsiHKCI	CYCGRG	1 cut(s)	467
BsiSI	CCGG	1 cut(s)	357
BslFI	GGGAC	2 cut(s)	53, 271
BsmAI	GTCTC	2 cut(s)	76, 129
BsmFI	GGGAC	2 cut(s)	53, 271
BsmI	GAATGC	1 cut(s)	965
BsnI	GGCC	3 cut(s)	23, 377, 430
BsoBI	CYCGRG	1 cut(s)	467
Bsp119I	TTCGAA	2 cut(s)	402, 790
Bsp143I	GATC	3 cut(s)	414, 574, 592
Bsp1720I	GCTNAGC	1 cut(s)	1085
BspACI	CCGC	6 cut(s)	218, 223, 302, 803, 1004, 1180
BspANI	GGCC	3 cut(s)	23, 377, 430
BspT104I	TTCGAA	2 cut(s)	402, 790
BsrBI	CCGCTC	2 cut(s)	218, 223
BsrDI	GCAATG	1 cut(s)	297
BssECI	CCNNGG	1 cut(s)	1065
BssMI	GATC	3 cut(s)	414, 574, 592
BssT1I	CCWWGG	1 cut(s)	1065
Bst4CI	ACNGT	5 cut(s)	86, 663, 732, 815, 1170
Bst6I	CTCTTC	3 cut(s)	195, 401, 520
BstBI	TTCGAA	2 cut(s)	402, 790
BstC8I	GCNNGC	1 cut(s)	25
BstDEI	CTNAG	2 cut(s)	1085, 1148
BstF5I	GGATG	3 cut(s)	134, 176, 290
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	3 cut(s)	417, 577, 595
BstMAI	GTCTC	2 cut(s)	76, 129
BstMBI	GATC	3 cut(s)	414, 574, 592
BstMWI	GCNNNNNNNGC	1 cut(s)	755
BstNSI	RCATGY	1 cut(s)	830
BstV1I	GCAGC	2 cut(s)	858, 1068
BstX2I	RGATCY	1 cut(s)	414
BstXI	CCANNNNNNTGG	1 cut(s)	776
BstYI	RGATCY	1 cut(s)	414
BsuRI	GGCC	3 cut(s)	23, 377, 430
BtrI	CACGTC	1 cut(s)	504
BtsCI	GGATG	3 cut(s)	134, 176, 290
Cac8I	GCNNGC	1 cut(s)	25
CfoI	GCGC	1 cut(s)	96
Cfr13I	GGNCC	3 cut(s)	428, 835, 1170
Csp6I	GTAC	2 cut(s)	739, 935
CviAII	CATG	5 cut(s)	543, 827, 1022, 1052, 1197
CviQI	GTAC	2 cut(s)	739, 935
DdeI	CTNAG	2 cut(s)	1085, 1148
DpnI	GATC	3 cut(s)	416, 576, 594
DpnII	GATC	3 cut(s)	414, 574, 592
Eam1104I	CTCTTC	3 cut(s)	195, 401, 520
EarI	CTCTTC	3 cut(s)	195, 401, 520
EciI	GGCGGA	1 cut(s)	1169
Eco130I	CCWWGG	1 cut(s)	1065
Eco147I	AGGCCT	1 cut(s)	377
Eco47I	GGWCC	2 cut(s)	835, 1170
Eco88I	CYCGRG	1 cut(s)	467
EcoT14I	CCWWGG	1 cut(s)	1065
ErhI	CCWWGG	1 cut(s)	1065
FaeI	CATG	5 cut(s)	546, 830, 1025, 1055, 1200
FalI	AAGNNNNNCTT	2 cut(s)	304, 336
FaqI	GGGAC	2 cut(s)	53, 271
FatI	CATG	5 cut(s)	542, 826, 1021, 1051, 1196
FauNDI	CATATG	1 cut(s)	422
FbaI	TGATCA	1 cut(s)	592
FblI	GTMKAC	1 cut(s)	1121
Fnu4HI	GCNGC	2 cut(s)	872, 1082
FokI	GGATG	3 cut(s)	121, 183, 277
Fsp4HI	GCNGC	2 cut(s)	872, 1082
FspBI	CTAG	2 cut(s)	606, 878
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	2 cut(s)	872, 1082
HaeIII	GGCC	3 cut(s)	23, 377, 430
HapII	CCGG	1 cut(s)	357
HhaI	GCGC	1 cut(s)	96
Hin1II	CATG	5 cut(s)	546, 830, 1025, 1055, 1200
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HindIII	AAGCTT	2 cut(s)	747, 1087
HinfI	GANTC	6 cut(s)	147, 238, 465, 485, 599, 781
HpaII	CCGG	1 cut(s)	357
HphI	GGTGA	2 cut(s)	98, 358
Hpy166II	GTNNAC	1 cut(s)	1122
Hpy188I	TCNGA	5 cut(s)	161, 649, 718, 915, 1096
Hpy188III	TCNNGA	3 cut(s)	52, 596, 616
Hpy8I	GTNNAC	1 cut(s)	1122
Hpy99I	CGWCG	5 cut(s)	667, 670, 736, 739, 1193
HpyAV	CCTTC	4 cut(s)	58, 330, 388, 499
HpyCH4III	ACNGT	5 cut(s)	86, 663, 732, 815, 1170
HpyCH4IV	ACGT	3 cut(s)	104, 503, 623
HpyCH4V	TGCA	3 cut(s)	59, 265, 1051
HpyF10VI	GCNNNNNNNGC	1 cut(s)	755
HpyF3I	CTNAG	2 cut(s)	1085, 1148
HpySE526I	ACGT	3 cut(s)	104, 503, 623
Hsp92II	CATG	5 cut(s)	546, 830, 1025, 1055, 1200
HspAI	GCGC	1 cut(s)	94
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	3 cut(s)	414, 574, 592
LmnI	GCTCC	2 cut(s)	215, 220
Lsp1109I	GCAGC	2 cut(s)	858, 1068
LweI	GCATC	1 cut(s)	691
MaeI	CTAG	2 cut(s)	606, 878
MaeII	ACGT	3 cut(s)	104, 503, 623
MaeIII	GTNAC	5 cut(s)	52, 86, 901, 992, 1105
MalI	GATC	3 cut(s)	416, 576, 594
MbiI	CCGCTC	2 cut(s)	218, 223
MboI	GATC	3 cut(s)	414, 574, 592
MboII	GAAGA	7 cut(s)	212, 373, 388, 391, 409, 424, 507
MfeI	CAATTG	1 cut(s)	119
MflI	RGATCY	1 cut(s)	414
MlyI	GAGTC	5 cut(s)	156, 247, 459, 494, 593
MmeI	TCCRAC	1 cut(s)	139
MroXI	GAANNNNTTC	1 cut(s)	416
MseI	TTAA	2 cut(s)	30, 1204
MspI	CCGG	1 cut(s)	357
MunI	CAATTG	1 cut(s)	119
Mva1269I	GAATGC	1 cut(s)	965
MwoI	GCNNNNNNNGC	1 cut(s)	755
NdeI	CATATG	1 cut(s)	422
NdeII	GATC	3 cut(s)	414, 574, 592
NlaIII	CATG	5 cut(s)	546, 830, 1025, 1055, 1200
NmuCI	GTSAC	5 cut(s)	52, 86, 901, 992, 1105
NspI	RCATGY	1 cut(s)	830
NspV	TTCGAA	2 cut(s)	402, 790
PaeR7I	CTCGAG	1 cut(s)	467
PceI	AGGCCT	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	1 cut(s)	500
PctI	GAATGC	1 cut(s)	965
PdmI	GAANNNNTTC	1 cut(s)	416
PfeI	GAWTC	1 cut(s)	781
PkrI	GCNGC	2 cut(s)	873, 1083
PleI	GAGTC	5 cut(s)	155, 246, 459, 493, 593
PpsI	GAGTC	5 cut(s)	155, 246, 459, 493, 593
PspPI	GGNCC	3 cut(s)	428, 835, 1170
PspXI	VCTCGAGB	1 cut(s)	467
PsuI	RGATCY	1 cut(s)	414
RsaI	GTAC	2 cut(s)	740, 936
RsaNI	GTAC	2 cut(s)	739, 935
SaqAI	TTAA	2 cut(s)	30, 1204
SatI	GCNGC	2 cut(s)	872, 1082
Sau3AI	GATC	3 cut(s)	414, 574, 592
Sau96I	GGNCC	3 cut(s)	428, 835, 1170
ScaI	AGTACT	1 cut(s)	936
SchI	GAGTC	5 cut(s)	156, 247, 459, 494, 593
SfaNI	GCATC	1 cut(s)	691
Sfr274I	CTCGAG	1 cut(s)	467
SfuI	TTCGAA	2 cut(s)	402, 790
SinI	GGWCC	2 cut(s)	835, 1170
SlaI	CTCGAG	1 cut(s)	467
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
SseBI	AGGCCT	1 cut(s)	377
SsiI	CCGC	6 cut(s)	218, 223, 302, 803, 1004, 1180
SspI	AATATT	1 cut(s)	1077
SspMI	CTAG	2 cut(s)	606, 878
StuI	AGGCCT	1 cut(s)	377
StyI	CCWWGG	1 cut(s)	1065
TaaI	ACNGT	5 cut(s)	86, 663, 732, 815, 1170
TaiI	ACGT	3 cut(s)	107, 506, 626
TaqI	TCGA	5 cut(s)	326, 402, 468, 790, 989
TatI	WGTACW	1 cut(s)	934
TfiI	GAWTC	1 cut(s)	781
Tru1I	TTAA	2 cut(s)	30, 1204
Tru9I	TTAA	2 cut(s)	30, 1204
TseFI	GTSAC	5 cut(s)	52, 86, 901, 992, 1105
TseI	GCWGC	2 cut(s)	871, 1081
Tsp45I	GTSAC	5 cut(s)	52, 86, 901, 992, 1105
TspDTI	ATGAA	5 cut(s)	312, 409, 425, 1038, 1059
TspGWI	ACGGA	2 cut(s)	509, 671
VpaK11BI	GGWCC	2 cut(s)	835, 1170
XapI	RAATTY	4 cut(s)	140, 328, 786, 840
XceI	RCATGY	1 cut(s)	830
XcmI	CCANNNNNNNNNTGG	1 cut(s)	540
XhoI	CTCGAG	1 cut(s)	467
XmiI	GTMKAC	1 cut(s)	1121
XmnI	GAANNNNTTC	1 cut(s)	416
XspI	CTAG	2 cut(s)	606, 878
ZrmI	AGTACT	1 cut(s)	936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.