Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001503

Physical Location & Seq

Genomic Coordinates Forward (+)

61682395 .. 61682760

Gene Structure 366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40736

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGACCAAATTTTAGCTTGTGCTTTCAATGAGAAATTGCTGCCTCTAGTGGAGAAGAATAAGCCCATTGTGACAACTCCTCTGAACCCAAAATTGAAATCAATACTGATTACTTGTTTATTACCAGAATGCTTTAAGAAAATGAGGAATATGTATTCGGAATACCCAACTTTGACCGGTGACATAATTGCAGTTTTCCAGCCAACCCATGAAGAGCATCAAAAGACAGATGGAGTGCATGACAGAAAAACCTCGGCAGAAATATTGCTGCTAAGCTTTTCTAATGTGTTGGTCACAAGTGCGGAGTCTACATTTGGGTATGTGGCTCAAAGTGTTCTATTCATTCCTGAAAATCAAATGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008417 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009969 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0036065 GO:0042546 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046983 GO:0070085 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XG_FTase

Protein Analysis

121

Amino Acids

13.63

Weight (kDa)

5.87

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XG_FTase	PF03254	2 - 112	8e-29	Xyloglucan fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03220
fragaria_vesca	FvH4_4g30950 FvH4_5g14640
malus_domestica	MD00G1081500.v1.1 MD14G1203600.v1.1 MD16G1068500.v1.1 MD16G1068600.v1.1 MD16G1068700.v1.1
prunus_persica	Prupe.1G278500_v2.0.a1 Prupe.5G196900_v2.0.a1
pyrus_communis	pycom14g16840 pycom16g05990 pycom16g06000
rosa_chinensis	RchiOBHm_Chr3g0485401 RchiOBHm_Chr3g0485411 RchiOBHm_Chr4g0439291 RchiOBHm_Chr4g0439301 RchiOBHm_Chr7g0181851
rosa_laevigata	RLG00000005169 RLG00000006282 RLG00000006284 RLG00000023152
rosa_multiflora	Rmu_co8397081.1_g000001 Rmu_sc0006598.1_g000004 Rmu_sc0006598.1_g000006 Rmu_sc0007912.1_g000001 Rmu_sc0021327.1_g000004 Rmu_ssc0000171.1_g000019
rosa_roxburghii	Rroxscaffold_3G00271700 Rroxscaffold_5G00380250
rosa_rugosa	Rorug04G0317200 Rorug04G0317200 Rorug06G0444400
rosa_samantha	Rh4AG368000 Rh4AG368100 Rh4BG379900 Rh4BG380000 Rh4CG394100 Rh4CG394200 Rh4CG394300 Rh4DG374300 Rh4DG374400 Rh7AG046700 Rh7BG046300 Rh7CG046800 Rh7DG045900
rosa_wichuraiana	Rw0G005600 Rw0G011610 Rw3G023710 Rw5G028570 Rw7G003860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	308
AciI	CCGC	1 cut(s)	302
AcsI	RAATTY	1 cut(s)	9
AgeI	ACCGGT	1 cut(s)	176
AgsI	TTSAA	2 cut(s)	28, 97
AluBI	AGCT	2 cut(s)	17, 276
AluI	AGCT	2 cut(s)	17, 276
ApeKI	GCWGC	2 cut(s)	40, 268
ApoI	RAATTY	1 cut(s)	9
AsiGI	ACCGGT	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	4
BbvI	GCAGC	2 cut(s)	27, 255
BccI	CCATC	1 cut(s)	224
BfaI	CTAG	1 cut(s)	47
BisI	GCNGC	2 cut(s)	41, 269
BlpI	GCTNAGC	1 cut(s)	272
BlsI	GCNGC	2 cut(s)	42, 270
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmsI	GCATC	1 cut(s)	226
Bpu1102I	GCTNAGC	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	176
Bse118I	RCCGGY	1 cut(s)	176
BseDI	CCNNGG	1 cut(s)	252
BseRI	GAGGAG	1 cut(s)	69
BseXI	GCAGC	2 cut(s)	27, 255
BshTI	ACCGGT	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	177
BsmI	GAATGC	1 cut(s)	134
Bsp1720I	GCTNAGC	1 cut(s)	272
BspACI	CCGC	1 cut(s)	302
BspQI	GCTCTTC	1 cut(s)	207
BsrFI	RCCGGY	1 cut(s)	176
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	1 cut(s)	252
Bst6I	CTCTTC	1 cut(s)	207
BstDEI	CTNAG	1 cut(s)	272
BstV1I	GCAGC	2 cut(s)	27, 255
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	1 cut(s)	4
CspAI	ACCGGT	1 cut(s)	176
CviAII	CATG	2 cut(s)	209, 239
CviJI	RGCY	5 cut(s)	17, 64, 202, 276, 326
CviKI_1	RGCY	5 cut(s)	17, 64, 202, 276, 326
DdeI	CTNAG	1 cut(s)	272
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	4
FaeI	CATG	2 cut(s)	212, 242
FaiI	YATR	5 cut(s)	152, 185, 210, 240, 321
FatI	CATG	2 cut(s)	208, 238
FblI	GTMKAC	1 cut(s)	308
Fnu4HI	GCNGC	2 cut(s)	41, 269
Fsp4HI	GCNGC	2 cut(s)	41, 269
FspBI	CTAG	1 cut(s)	47
GluI	GCNGC	2 cut(s)	41, 269
HapII	CCGG	1 cut(s)	177
Hin1II	CATG	2 cut(s)	212, 242
HindIII	AAGCTT	1 cut(s)	274
HinfI	GANTC	1 cut(s)	305
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	1 cut(s)	309
Hpy188I	TCNGA	2 cut(s)	84, 160
Hpy188III	TCNNGA	1 cut(s)	347
Hpy8I	GTNNAC	1 cut(s)	309
HpyCH4V	TGCA	2 cut(s)	191, 238
HpyF3I	CTNAG	1 cut(s)	272
Hsp92II	CATG	2 cut(s)	212, 242
LguI	GCTCTTC	1 cut(s)	207
LpnPI	CCDG	4 cut(s)	138, 190, 212, 360
Lsp1109I	GCAGC	2 cut(s)	27, 255
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	1 cut(s)	47
MaeIII	GTNAC	3 cut(s)	70, 179, 292
MboII	GAAGA	2 cut(s)	67, 224
MluCI	AATT	4 cut(s)	9, 35, 92, 186
MlyI	GAGTC	1 cut(s)	314
MnlI	CCTC	4 cut(s)	54, 90, 138, 262
MseI	TTAA	1 cut(s)	135
MspI	CCGG	1 cut(s)	177
Mva1269I	GAATGC	1 cut(s)	134
NlaIII	CATG	2 cut(s)	212, 242
NmeAIII	GCCGAG	1 cut(s)	233
NmuCI	GTSAC	3 cut(s)	70, 179, 292
PciSI	GCTCTTC	1 cut(s)	207
PctI	GAATGC	1 cut(s)	134
PinAI	ACCGGT	1 cut(s)	176
PkrI	GCNGC	2 cut(s)	42, 270
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
PspPI	GGNCC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	2 cut(s)	41, 269
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	314
SetI	ASST	3 cut(s)	19, 254, 278
SfaNI	GCATC	1 cut(s)	226
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	4 cut(s)	9, 35, 92, 186
SsiI	CCGC	1 cut(s)	302
SspI	AATATT	1 cut(s)	264
SspMI	CTAG	1 cut(s)	47
TasI	AATT	4 cut(s)	9, 35, 92, 186
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TseFI	GTSAC	3 cut(s)	70, 179, 292
TseI	GCWGC	2 cut(s)	40, 268
Tsp45I	GTSAC	3 cut(s)	70, 179, 292
TspDTI	ATGAA	2 cut(s)	225, 331
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	9
XmiI	GTMKAC	1 cut(s)	308
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.