Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006598.1

Orthogroup ID

OG0001503

Physical Location & Seq

Genomic Coordinates Reverse (-)

19687 .. 20972

Gene Structure 1286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006598.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgtattcggaatacccaactttgaccggtgacataattgcggttttccagccaagccatgaagagcatcaaaagacagatgaagtgcatgacagaaaaaccttggcagaaatattgctgctaagcttttctgatgtgttggtcacaagtgcgaagtctacatttgggagatcgagcttcattgacgacgtggccgaggaagaggaggacgacgatgaatacggcccctatcgtggtggtggtggtgggagtcataagcggagcaaaaagagcctctccaatgtgggttttcttgatctcgaagcagaggtcgattcagataaggaggaaaaggaggatgagggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008417 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009969 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0036065 GO:0042546 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046983 GO:0070085 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XG_FTase

Protein Analysis

115

Amino Acids

12.79

Weight (kDa)

4.37

Isoelectric Point (pI)

51.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03220
fragaria_vesca	FvH4_4g30950 FvH4_5g14640
malus_domestica	MD00G1081500.v1.1 MD14G1203600.v1.1 MD16G1068500.v1.1 MD16G1068600.v1.1 MD16G1068700.v1.1
prunus_persica	Prupe.1G278500_v2.0.a1 Prupe.5G196900_v2.0.a1
pyrus_communis	pycom14g16840 pycom16g05990 pycom16g06000
rosa_chinensis	RchiOBHm_Chr3g0485401 RchiOBHm_Chr3g0485411 RchiOBHm_Chr4g0439291 RchiOBHm_Chr4g0439301 RchiOBHm_Chr7g0181851
rosa_laevigata	RLG00000005169 RLG00000006282 RLG00000006284 RLG00000023152
rosa_multiflora	Rmu_co8397081.1_g000001 Rmu_sc0006598.1_g000004 Rmu_sc0006598.1_g000006 Rmu_sc0007912.1_g000001 Rmu_sc0021327.1_g000004 Rmu_ssc0000171.1_g000019
rosa_roxburghii	Rroxscaffold_3G00271700 Rroxscaffold_5G00380250
rosa_rugosa	Rorug04G0317200 Rorug04G0317200 Rorug06G0444400
rosa_samantha	Rh4AG368000 Rh4AG368100 Rh4BG379900 Rh4BG380000 Rh4CG394100 Rh4CG394200 Rh4CG394300 Rh4DG374300 Rh4DG374400 Rh7AG046700 Rh7BG046300 Rh7CG046800 Rh7DG045900
rosa_wichuraiana	Rw0G005600 Rw0G011610 Rw3G023710 Rw5G028570 Rw7G003860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	158
AciI	CCGC	2 cut(s)	41, 259
AcoI	YGGCCR	1 cut(s)	192
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgeI	ACCGGT	1 cut(s)	26
AjiI	CACGTC	1 cut(s)	190
AluBI	AGCT	2 cut(s)	126, 177
AluI	AGCT	2 cut(s)	126, 177
AoxI	GGCC	2 cut(s)	192, 223
ApeKI	GCWGC	1 cut(s)	118
ArsI	GACNNNNNNTTYG	2 cut(s)	294, 326
AsiGI	ACCGGT	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	105
BceAI	ACGGC	1 cut(s)	238
BisI	GCNGC	1 cut(s)	119
BlpI	GCTNAGC	1 cut(s)	122
BlsI	GCNGC	1 cut(s)	120
BmgBI	CACGTC	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	226
BmsI	GCATC	1 cut(s)	76
Bpu1102I	GCTNAGC	1 cut(s)	122
BsaJI	CCNNGG	2 cut(s)	102, 195
BsaWI	WCCGGW	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse118I	RCCGGY	1 cut(s)	26
BseDI	CCNNGG	2 cut(s)	102, 195
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseRI	GAGGAG	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	105
BshFI	GGCC	2 cut(s)	194, 225
BshTI	ACCGGT	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	27
BslI	CCNNNNNNNGG	1 cut(s)	233
BsnI	GGCC	2 cut(s)	194, 225
Bsp143I	GATC	2 cut(s)	170, 295
Bsp1720I	GCTNAGC	1 cut(s)	122
BspACI	CCGC	2 cut(s)	41, 259
BspANI	GGCC	2 cut(s)	194, 225
BspLI	GGNNCC	1 cut(s)	226
BspQI	GCTCTTC	1 cut(s)	57
BsrFI	RCCGGY	1 cut(s)	26
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	2 cut(s)	102, 195
BssMI	GATC	2 cut(s)	170, 295
BssT1I	CCWWGG	1 cut(s)	102
Bst6I	CTCTTC	2 cut(s)	57, 195
BstDEI	CTNAG	1 cut(s)	122
BstF5I	GGATG	1 cut(s)	343
BstKTI	GATC	2 cut(s)	173, 298
BstMBI	GATC	2 cut(s)	170, 295
BstMWI	GCNNNNNNNGC	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	105
BsuRI	GGCC	2 cut(s)	194, 225
BtrI	CACGTC	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	343
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	224
CspAI	ACCGGT	1 cut(s)	26
CviAII	CATG	2 cut(s)	59, 89
CviJI	RGCY	7 cut(s)	52, 57, 126, 177, 194, 225, 273
CviKI_1	RGCY	7 cut(s)	52, 57, 126, 177, 194, 225, 273
DdeI	CTNAG	1 cut(s)	122
DpnI	GATC	2 cut(s)	172, 297
DpnII	GATC	2 cut(s)	170, 295
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	2 cut(s)	57, 195
EarI	CTCTTC	2 cut(s)	57, 195
Eco130I	CCWWGG	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	2 cut(s)	62, 92
FaiI	YATR	4 cut(s)	35, 60, 90, 255
FatI	CATG	2 cut(s)	58, 88
FblI	GTMKAC	1 cut(s)	158
Fnu4HI	GCNGC	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	119
GluI	GCNGC	1 cut(s)	119
HaeIII	GGCC	2 cut(s)	194, 225
HapII	CCGG	1 cut(s)	27
Hin1II	CATG	2 cut(s)	62, 92
HindIII	AAGCTT	1 cut(s)	124
HinfI	GANTC	2 cut(s)	250, 314
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	3 cut(s)	10, 133, 319
Hpy188III	TCNNGA	2 cut(s)	293, 299
Hpy8I	GTNNAC	1 cut(s)	159
Hpy99I	CGWCG	2 cut(s)	191, 215
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	1 cut(s)	88
HpyF10VI	GCNNNNNNNGC	1 cut(s)	270
HpyF3I	CTNAG	1 cut(s)	122
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	2 cut(s)	62, 92
Kzo9I	GATC	2 cut(s)	170, 295
LguI	GCTCTTC	1 cut(s)	57
LmnI	GCTCC	1 cut(s)	261
LpnPI	CCDG	2 cut(s)	40, 62
Lsp1109I	GCAGC	1 cut(s)	105
LweI	GCATC	1 cut(s)	76
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	2 cut(s)	29, 142
MalI	GATC	2 cut(s)	172, 297
MboI	GATC	2 cut(s)	170, 295
MboII	GAAGA	2 cut(s)	74, 212
MluCI	AATT	1 cut(s)	36
MlyI	GAGTC	1 cut(s)	259
MnlI	CCTC	8 cut(s)	190, 196, 199, 284, 301, 319, 328, 334
MspI	CCGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	270
NdeII	GATC	2 cut(s)	170, 295
NlaIII	CATG	2 cut(s)	62, 92
NlaIV	GGNNCC	1 cut(s)	226
NmeAIII	GCCGAG	1 cut(s)	220
NmuCI	GTSAC	2 cut(s)	29, 142
PciSI	GCTCTTC	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	314
PinAI	ACCGGT	1 cut(s)	26
PkrI	GCNGC	1 cut(s)	120
PleI	GAGTC	1 cut(s)	258
PpsI	GAGTC	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	226
PspPI	GGNCC	1 cut(s)	224
SapI	GCTCTTC	1 cut(s)	57
SatI	GCNGC	1 cut(s)	119
Sau3AI	GATC	2 cut(s)	170, 295
Sau96I	GGNCC	1 cut(s)	224
SchI	GAGTC	1 cut(s)	259
SetI	ASST	5 cut(s)	104, 128, 179, 192, 312
SfaNI	GCATC	1 cut(s)	76
Sse9I	AATT	1 cut(s)	36
SsiI	CCGC	2 cut(s)	41, 259
SspI	AATATT	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	102
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	3 cut(s)	173, 300, 312
TasI	AATT	1 cut(s)	36
TfiI	GAWTC	1 cut(s)	314
TseFI	GTSAC	2 cut(s)	29, 142
TseI	GCWGC	1 cut(s)	118
Tsp45I	GTSAC	2 cut(s)	29, 142
TspDTI	ATGAA	4 cut(s)	75, 96, 169, 231
XmiI	GTMKAC	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.