Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001503

Physical Location & Seq

Genomic Coordinates Reverse (-)

29869866 .. 29870913

Gene Structure 1048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G023710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGATTTCCCCCTTAAAAATCAGTTTGCCAGCTTGGATCAGAAATCTCCACATTGTCATGGGGAAATGGTGAGGAAGAGCAACCTCACAAATACGGGCAAGTCACTGCTGTCATCTTTTGTGTATCTCCATCTATCCTATGATTACAATGATCAAGATAAGCTTTTCTTCTGCAACCAAGATCAAGATTTTCTCGAAAAGATACCGCGGTTGATCGTGAGGACGGATTACTATTTTGTCCCATCTCTTTTCTTGATCCCATCTTTTGAGCAAGAACTCAGTAATCTCTTTCAGAAACAGTTTTCCATTTCTTGGGTCGGTACCTGTTTGGCTGCTCCATCCCACAAATATGTCTTTGATACCGGGACTGGTCCATTTCAACACGTGTTTGATCAGATCCTATCCTGTGCATTGAAGGAGAATCTGTTACCCGAAACAAACGGGCAGGTTCTCATAGTCAGTCCATCAGAAACGTCGAAGTCTAAAGCTCATCCTACTGTGACAGGAGAGGTGAATGGTATTTGTCAGCCTAGTCATGAGGAGTATCAACAAACTGAGAAGCATACGCACAAGGAGCAATGTCAATGGAGCCTTGCTTTCACTCACCTACCTTCTATGATTGCAAGGCCGGCCAAAACAGGAGTTGACACAGGTGCACTAGTTCCTTATGTGAGGCATTGTGAGGATATGAGTTGGGATCTTAAATTGATTGATCCATCTGATGAGTTGTTGGTATCATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008417 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009969 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0036065 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0070085 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XG_FTase

Protein Analysis

247

Amino Acids

28.11

Weight (kDa)

5.61

Isoelectric Point (pI)

31.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XG_FTase	PF03254	2 - 114	8.2e-29	Xyloglucan fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03220
fragaria_vesca	FvH4_4g30950 FvH4_5g14640
malus_domestica	MD00G1081500.v1.1 MD14G1203600.v1.1 MD16G1068500.v1.1 MD16G1068600.v1.1 MD16G1068700.v1.1
prunus_persica	Prupe.1G278500_v2.0.a1 Prupe.5G196900_v2.0.a1
pyrus_communis	pycom14g16840 pycom16g05990 pycom16g06000
rosa_chinensis	RchiOBHm_Chr3g0485401 RchiOBHm_Chr3g0485411 RchiOBHm_Chr4g0439291 RchiOBHm_Chr4g0439301 RchiOBHm_Chr7g0181851
rosa_laevigata	RLG00000005169 RLG00000006282 RLG00000006284 RLG00000023152
rosa_multiflora	Rmu_co8397081.1_g000001 Rmu_sc0006598.1_g000004 Rmu_sc0006598.1_g000006 Rmu_sc0007912.1_g000001 Rmu_sc0021327.1_g000004 Rmu_ssc0000171.1_g000019
rosa_roxburghii	Rroxscaffold_3G00271700 Rroxscaffold_5G00380250
rosa_rugosa	Rorug04G0317200 Rorug04G0317200 Rorug06G0444400
rosa_samantha	Rh4AG368000 Rh4AG368100 Rh4BG379900 Rh4BG380000 Rh4CG394100 Rh4CG394200 Rh4CG394300 Rh4DG374300 Rh4DG374400 Rh7AG046700 Rh7BG046300 Rh7CG046800 Rh7DG045900
rosa_wichuraiana	Rw0G005600 Rw0G011610 Rw3G023710 Rw5G028570 Rw7G003860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	742
Acc36I	ACCTGC	1 cut(s)	436
Acc65I	GGTACC	1 cut(s)	320
AccB1I	GGYRCC	1 cut(s)	320
AccB7I	CCANNNNNTGG	1 cut(s)	312
AccII	CGCG	1 cut(s)	208
AciI	CCGC	2 cut(s)	206, 208
AclWI	GGATC	5 cut(s)	45, 250, 391, 705, 707
AcoI	YGGCCR	1 cut(s)	630
AcvI	CACGTG	1 cut(s)	385
AfaI	GTAC	1 cut(s)	322
AfiI	CCNNNNNNNGG	1 cut(s)	312
AflIII	ACRYGT	2 cut(s)	382, 384
AgsI	TTSAA	2 cut(s)	380, 415
AhlI	ACTAGT	1 cut(s)	658
AluBI	AGCT	3 cut(s)	33, 163, 488
AluI	AGCT	3 cut(s)	33, 163, 488
Alw21I	GWGCWC	1 cut(s)	658
Alw44I	GTGCAC	1 cut(s)	654
AlwI	GGATC	5 cut(s)	45, 250, 391, 705, 707
AoxI	GGCC	2 cut(s)	626, 630
ApaLI	GTGCAC	1 cut(s)	654
ApeKI	GCWGC	1 cut(s)	332
Asp718I	GGTACC	1 cut(s)	320
AspS9I	GGNCC	1 cut(s)	371
AsuC2I	CCSGG	1 cut(s)	364
AsuHPI	GGTGA	3 cut(s)	82, 523, 596
AvaII	GGWCC	1 cut(s)	371
BaeGI	GKGCMC	1 cut(s)	658
BaeI	ACNNNNGTAYC	2 cut(s)	194, 227
BanI	GGYRCC	1 cut(s)	320
BbrPI	CACGTG	1 cut(s)	385
Bbv12I	GWGCWC	1 cut(s)	658
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	6 cut(s)	138, 250, 268, 346, 472, 724
BclI	TGATCA	2 cut(s)	151, 391
BcnI	CCSGG	1 cut(s)	364
BcuI	ACTAGT	1 cut(s)	658
BfaI	CTAG	2 cut(s)	531, 659
BfuAI	ACCTGC	1 cut(s)	436
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
Bme1390I	CCNGG	1 cut(s)	364
Bme18I	GGWCC	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	2 cut(s)	322, 590
BmrFI	CCNGG	1 cut(s)	364
BpuMI	CCSGG	1 cut(s)	364
BsaAI	YACGTR	1 cut(s)	385
BsaJI	CCNNGG	1 cut(s)	206
BsaXI	ACNNNNNCTCC	2 cut(s)	410, 440
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse118I	RCCGGY	1 cut(s)	628
Bse1I	ACTGG	1 cut(s)	373
Bse3DI	GCAATG	1 cut(s)	584
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	2 cut(s)	338, 490
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMI	GCAATG	1 cut(s)	584
BseMII	CTCAG	2 cut(s)	292, 546
BseNI	ACTGG	1 cut(s)	373
BseRI	GAGGAG	1 cut(s)	554
BseSI	GKGCMC	1 cut(s)	658
BseXI	GCAGC	1 cut(s)	319
Bsh1236I	CGCG	1 cut(s)	208
BshFI	GGCC	2 cut(s)	628, 632
BshNI	GGYRCC	1 cut(s)	320
BsiHKAI	GWGCWC	1 cut(s)	658
BsiSI	CCGG	2 cut(s)	363, 629
BslFI	GGGAC	2 cut(s)	224, 379
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmFI	GGGAC	2 cut(s)	224, 379
BsnI	GGCC	2 cut(s)	628, 632
Bsp1286I	GDGCHC	1 cut(s)	658
Bsp143I	GATC	9 cut(s)	37, 151, 181, 213, 255, 391, 396, 697, 712
BspACI	CCGC	2 cut(s)	206, 208
BspANI	GGCC	2 cut(s)	628, 632
BspCNI	CTCAG	2 cut(s)	291, 547
BspFNI	CGCG	1 cut(s)	208
BspHI	TCATGA	1 cut(s)	535
BspLI	GGNNCC	2 cut(s)	322, 590
BspMI	ACCTGC	1 cut(s)	436
BspPI	GGATC	5 cut(s)	45, 250, 391, 705, 707
BspQI	GCTCTTC	1 cut(s)	71
BspT107I	GGYRCC	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	584
BsrFI	RCCGGY	1 cut(s)	628
BsrI	ACTGG	1 cut(s)	373
BssAI	RCCGGY	1 cut(s)	628
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	9 cut(s)	37, 151, 181, 213, 255, 391, 396, 697, 712
Bst4CI	ACNGT	2 cut(s)	300, 499
Bst6I	CTCTTC	1 cut(s)	71
BstBAI	YACGTR	1 cut(s)	385
BstC8I	GCNNGC	2 cut(s)	31, 630
BstDEI	CTNAG	2 cut(s)	278, 555
BstDSI	CCRYGG	1 cut(s)	206
BstF5I	GGATG	2 cut(s)	338, 490
BstFNI	CGCG	1 cut(s)	208
BstKTI	GATC	9 cut(s)	40, 154, 184, 216, 258, 394, 399, 700, 715
BstMBI	GATC	9 cut(s)	37, 151, 181, 213, 255, 391, 396, 697, 712
BstMWI	GCNNNNNNNGC	2 cut(s)	574, 629
BstSCI	CCNGG	1 cut(s)	362
BstSLI	GKGCMC	1 cut(s)	658
BstUI	CGCG	1 cut(s)	208
BstV1I	GCAGC	1 cut(s)	319
BstX2I	RGATCY	2 cut(s)	396, 697
BstYI	RGATCY	2 cut(s)	396, 697
BsuRI	GGCC	2 cut(s)	628, 632
BtgI	CCRYGG	1 cut(s)	206
BtsCI	GGATG	2 cut(s)	338, 490
BtsI	GCAGTG	1 cut(s)	104
BtsIMutI	CAGTG	1 cut(s)	104
BveI	ACCTGC	1 cut(s)	436
Cac8I	GCNNGC	2 cut(s)	31, 630
CciI	TCATGA	1 cut(s)	535
Cfr10I	RCCGGY	1 cut(s)	628
Cfr13I	GGNCC	1 cut(s)	371
Cfr42I	CCGCGG	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	321
CviAII	CATG	2 cut(s)	59, 536
CviJI	RGCY	8 cut(s)	33, 163, 332, 488, 529, 591, 628, 632
CviKI_1	RGCY	8 cut(s)	33, 163, 332, 488, 529, 591, 628, 632
CviQI	GTAC	1 cut(s)	321
DdeI	CTNAG	2 cut(s)	278, 555
DpnI	GATC	9 cut(s)	39, 153, 183, 215, 257, 393, 398, 699, 714
DpnII	GATC	9 cut(s)	37, 151, 181, 213, 255, 391, 396, 697, 712
EaeI	YGGCCR	1 cut(s)	630
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	371
Eco72I	CACGTG	1 cut(s)	385
FaeI	CATG	2 cut(s)	62, 539
FalI	AAGNNNNNCTT	4 cut(s)	147, 179, 152, 184
FaqI	GGGAC	2 cut(s)	224, 379
FatI	CATG	2 cut(s)	58, 535
FbaI	TGATCA	2 cut(s)	151, 391
Fnu4HI	GCNGC	1 cut(s)	333
FokI	GGATG	2 cut(s)	325, 477
FseI	GGCCGGCC	1 cut(s)	632
Fsp4HI	GCNGC	1 cut(s)	333
FspBI	CTAG	2 cut(s)	531, 659
GluI	GCNGC	1 cut(s)	333
HaeIII	GGCC	2 cut(s)	628, 632
HapII	CCGG	2 cut(s)	363, 629
Hin1II	CATG	2 cut(s)	62, 539
HincII	GTYRAC	1 cut(s)	646
HindII	GTYRAC	1 cut(s)	646
HindIII	AAGCTT	1 cut(s)	161
HinfI	GANTC	1 cut(s)	421
HpaII	CCGG	2 cut(s)	363, 629
HphI	GGTGA	3 cut(s)	82, 523, 596
Hpy166II	GTNNAC	2 cut(s)	646, 656
Hpy188I	TCNGA	5 cut(s)	42, 294, 396, 469, 721
Hpy188III	TCNNGA	6 cut(s)	155, 185, 194, 217, 253, 536
Hpy8I	GTNNAC	2 cut(s)	646, 656
Hpy99I	CGWCG	1 cut(s)	478
HpyAV	CCTTC	2 cut(s)	409, 621
HpyCH4III	ACNGT	2 cut(s)	300, 499
HpyCH4IV	ACGT	2 cut(s)	384, 473
HpyCH4V	TGCA	4 cut(s)	174, 410, 623, 656
HpyF10VI	GCNNNNNNNGC	2 cut(s)	574, 629
HpyF3I	CTNAG	2 cut(s)	278, 555
HpySE526I	ACGT	2 cut(s)	384, 473
Hsp92II	CATG	2 cut(s)	62, 539
KpnI	GGTACC	1 cut(s)	324
KroI	GCCGGC	1 cut(s)	628
KroNI	GCCGGC	1 cut(s)	630
Ksp22I	TGATCA	2 cut(s)	151, 391
KspI	CCGCGG	1 cut(s)	209
Kzo9I	GATC	9 cut(s)	37, 151, 181, 213, 255, 391, 396, 697, 712
LguI	GCTCTTC	1 cut(s)	71
LmnI	GCTCC	3 cut(s)	340, 574, 588
Lsp1109I	GCAGC	1 cut(s)	319
MaeI	CTAG	2 cut(s)	531, 659
MaeII	ACGT	2 cut(s)	384, 473
MaeIII	GTNAC	3 cut(s)	102, 426, 499
MalI	GATC	9 cut(s)	39, 153, 183, 215, 257, 393, 398, 699, 714
MboI	GATC	9 cut(s)	37, 151, 181, 213, 255, 391, 396, 697, 712
MboII	GAAGA	2 cut(s)	88, 160
MflI	RGATCY	2 cut(s)	396, 697
MhlI	GDGCHC	1 cut(s)	658
MluCI	AATT	1 cut(s)	704
MnlI	CCTC	7 cut(s)	66, 95, 213, 502, 532, 666, 676
MroNI	GCCGGC	1 cut(s)	628
MseI	TTAA	2 cut(s)	15, 702
MslI	CAYNNNNRTG	2 cut(s)	57, 348
MspA1I	CMGCKG	1 cut(s)	208
MspI	CCGG	2 cut(s)	363, 629
MspR9I	CCNGG	1 cut(s)	364
MvnI	CGCG	1 cut(s)	208
MwoI	GCNNNNNNNGC	2 cut(s)	574, 629
NaeI	GCCGGC	1 cut(s)	630
NciI	CCSGG	1 cut(s)	364
NdeII	GATC	9 cut(s)	37, 151, 181, 213, 255, 391, 396, 697, 712
NgoMIV	GCCGGC	1 cut(s)	628
NlaIII	CATG	2 cut(s)	62, 539
NlaIV	GGNNCC	2 cut(s)	322, 590
NmuCI	GTSAC	2 cut(s)	102, 499
PagI	TCATGA	1 cut(s)	535
PciSI	GCTCTTC	1 cut(s)	71
PdiI	GCCGGC	1 cut(s)	630
PfeI	GAWTC	1 cut(s)	421
PflMI	CCANNNNNTGG	1 cut(s)	312
PkrI	GCNGC	1 cut(s)	334
PmaCI	CACGTG	1 cut(s)	385
PmlI	CACGTG	1 cut(s)	385
Ppu21I	YACGTR	1 cut(s)	385
PsiI	TTATAA	1 cut(s)	742
PspCI	CACGTG	1 cut(s)	385
PspN4I	GGNNCC	2 cut(s)	322, 590
PspPI	GGNCC	1 cut(s)	371
PsuI	RGATCY	2 cut(s)	396, 697
RigI	GGCCGGCC	1 cut(s)	632
RsaI	GTAC	1 cut(s)	322
RsaNI	GTAC	1 cut(s)	321
RseI	CAYNNNNRTG	2 cut(s)	57, 348
SacII	CCGCGG	1 cut(s)	209
SapI	GCTCTTC	1 cut(s)	71
SaqAI	TTAA	2 cut(s)	15, 702
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	9 cut(s)	37, 151, 181, 213, 255, 391, 396, 697, 712
Sau96I	GGNCC	1 cut(s)	371
ScrFI	CCNGG	1 cut(s)	364
SduI	GDGCHC	1 cut(s)	658
Sfr303I	CCGCGG	1 cut(s)	209
SgrBI	CCGCGG	1 cut(s)	209
SinI	GGWCC	1 cut(s)	371
SmiMI	CAYNNNNRTG	2 cut(s)	57, 348
SpeI	ACTAGT	1 cut(s)	658
Sse9I	AATT	1 cut(s)	704
SsiI	CCGC	2 cut(s)	206, 208
SspMI	CTAG	2 cut(s)	531, 659
StyD4I	CCNGG	1 cut(s)	362
TaaI	ACNGT	2 cut(s)	300, 499
TaiI	ACGT	2 cut(s)	387, 476
TaqI	TCGA	2 cut(s)	195, 476
TasI	AATT	1 cut(s)	704
TfiI	GAWTC	1 cut(s)	421
Tru1I	TTAA	2 cut(s)	15, 702
Tru9I	TTAA	2 cut(s)	15, 702
TscAI	CASTG	1 cut(s)	111
TseFI	GTSAC	2 cut(s)	102, 499
TseI	GCWGC	1 cut(s)	332
Tsp45I	GTSAC	2 cut(s)	102, 499
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	1 cut(s)	111
Van91I	CCANNNNNTGG	1 cut(s)	312
VneI	GTGCAC	1 cut(s)	654
VpaK11BI	GGWCC	1 cut(s)	371
XspI	CTAG	2 cut(s)	531, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.