Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003982

Physical Location & Seq

Genomic Coordinates Forward (+)

8387732 .. 8389660

Gene Structure 1929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g14760.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGTCGAAAGCAGTGATTTTTCTCTTGGGGCTTCTTACTCTGACCCCATTGTTTGCTCATGCTTATGATGATGGAGGTTGGGTTAACGCCCATGCCACTTTCTATGGTGGGGGTGATGCCTCTGGCACTATGGGTGGAGCTTGTGGGTATGGAAACCTATACAGTCAAGGGTACGGCACAAACACAGCAGCACTAAGCACAGCCTTGTTCAACAATGGCTTGAGCTGCGGGGCTTGCTTTGAGATCAAGTGTGTCAATGACCCCAAATGGTGCCTTCCAGGCTCTATTTTGGTCACTGCCACCAATTTCTGCCCTCCAAACAATGCACTCCCTAACAACAACGGCGGTTGGTGCAACCCTCCTCAGCACCATTTCGATCTCGCCCAGCCCGTCTTCCAGCATATTGCTCAATACAGAGCTGGAATCGTCCCTGTCTCCTACCGAAGAGTACCTTGCCAAAAGAAGGGTGGAATAAGGTTCACTATCAACGGTCACTCATACTTCAACCTGGTCCTAATCACAAACGTTGGTGGTGCTGGTGATGTTCAGTCTGTTTCCATCAAAGGGTCAAGAACTAATTGGCAACCCATGTCTAGGAACTGGGGTCAGAACTGGCAGAGCAACTCTTACCTCGACGGCCAAAGCCTCTCATTCAAGGTCACAACCAGTGATGGCCGCACTGTGGTCTCTAACAATGCTGTTGCGGCCGGATGGTCTTTCGGACAAACTTTCTCCGGCCTCCAATTCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

251

Amino Acids

26.73

Weight (kDa)

8.8

Isoelectric Point (pI)

33.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	49 - 172	5.4e-09	EXPB1-like domain 1
DPBB_1	PF03330	80 - 165	2.6e-22	Lytic transglycolase
Expansin_C	PF01357	176 - 252	7.7e-33	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003982)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31140 FvH4_5g14760 FvH4_5g14760
malus_domestica	MD06G1195100.v1.1 MD13G1070200.v1.1 MD14G1202100.v1.1 MD16G1070600.v1.1
prunus_persica	Prupe.1G276700_v2.0.a1 Prupe.5G195200_v2.0.a1
pyrus_communis	pycom06g17260 pycom13g06300 pycom14g16740 pycom16g06140
rosa_chinensis	RchiOBHm_Chr4g0439541 RchiOBHm_Chr7g0181621
rosa_laevigata	RLG00000005178 RLG00000006260
rosa_multiflora	Rmu_sc0000988.1_g000016 Rmu_sc0007276.1_g000013
rosa_roxburghii	Rroxscaffold_3G00271840 Rroxscaffold_5G00380460
rosa_rugosa	Rorug04G0319400 Rorug06G0442600 Rorug06G0442600
rosa_samantha	Rh4AG370600 Rh4BG382400 Rh4CG397000 Rh7AG045000 Rh7BG044000 Rh7BG044100 Rh7CG045700
rosa_wichuraiana	Rw4G031590 Rw7G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	270
AciI	CCGC	4 cut(s)	228, 345, 676, 704
AclI	AACGTT	1 cut(s)	525
AcoI	YGGCCR	3 cut(s)	637, 673, 705
AfaI	GTAC	2 cut(s)	173, 450
AfiI	CCNNNNNNNGG	4 cut(s)	463, 564, 594, 682
AgsI	TTSAA	3 cut(s)	211, 505, 655
AjnI	CCWGG	2 cut(s)	277, 507
AluBI	AGCT	3 cut(s)	140, 225, 419
AluI	AGCT	3 cut(s)	140, 225, 419
Alw26I	GTCTC	2 cut(s)	439, 691
AoxI	GGCC	4 cut(s)	637, 673, 705, 736
ApeKI	GCWGC	2 cut(s)	188, 225
AspS9I	GGNCC	1 cut(s)	511
AsuHPI	GGTGA	2 cut(s)	125, 551
AvaII	GGWCC	1 cut(s)	511
BanI	GGYRCC	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	385
BbvCI	CCTCAGC	1 cut(s)	363
BbvI	GCAGC	2 cut(s)	200, 212
BccI	CCATC	4 cut(s)	65, 566, 665, 705
BceAI	ACGGC	3 cut(s)	190, 358, 652
BciT130I	CCWGG	2 cut(s)	279, 509
BcoDI	GTCTC	2 cut(s)	439, 691
BfaI	CTAG	1 cut(s)	594
BglI	GCCNNNNNGGC	1 cut(s)	279
BisI	GCNGC	4 cut(s)	189, 226, 676, 705
BlsI	GCNGC	4 cut(s)	190, 227, 677, 706
Bme1390I	CCNGG	2 cut(s)	279, 509
Bme18I	GGWCC	1 cut(s)	511
BmgT120I	GGNCC	1 cut(s)	511
BmiI	GGNNCC	1 cut(s)	272
BmrFI	CCNGG	2 cut(s)	279, 509
BmrI	ACTGGG	1 cut(s)	610
BmsI	GCATC	1 cut(s)	106
BmuI	ACTGGG	1 cut(s)	610
BpiI	GAAGAC	1 cut(s)	385
Bpu10I	CCTNAGC	1 cut(s)	363
BpuEI	CTTGAG	1 cut(s)	241
BsaI	GGTCTC	1 cut(s)	691
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	4 cut(s)	463, 564, 594, 682
Bse1I	ACTGG	3 cut(s)	605, 617, 666
BseBI	CCWGG	2 cut(s)	279, 509
BseGI	GGATG	1 cut(s)	716
BseLI	CCNNNNNNNGG	4 cut(s)	463, 564, 594, 682
BseMII	CTCAG	1 cut(s)	377
BseNI	ACTGG	3 cut(s)	605, 617, 666
BseRI	GAGGAG	1 cut(s)	351
BseX3I	CGGCCG	1 cut(s)	705
BseXI	GCAGC	2 cut(s)	200, 212
BseYI	CCCAGC	1 cut(s)	384
Bsh1285I	CGRYCG	1 cut(s)	708
BshFI	GGCC	4 cut(s)	639, 675, 707, 738
BshNI	GGYRCC	1 cut(s)	270
BsiEI	CGRYCG	1 cut(s)	708
BsiSI	CCGG	2 cut(s)	708, 735
BslFI	GGGAC	1 cut(s)	413
BslI	CCNNNNNNNGG	4 cut(s)	463, 564, 594, 682
BsmAI	GTCTC	2 cut(s)	439, 691
BsmFI	GGGAC	1 cut(s)	413
BsnI	GGCC	4 cut(s)	639, 675, 707, 738
Bso31I	GGTCTC	1 cut(s)	691
Bsp143I	GATC	2 cut(s)	243, 376
BspACI	CCGC	4 cut(s)	228, 345, 676, 704
BspANI	GGCC	4 cut(s)	639, 675, 707, 738
BspCNI	CTCAG	1 cut(s)	376
BspLI	GGNNCC	1 cut(s)	272
BspT107I	GGYRCC	1 cut(s)	270
BspTNI	GGTCTC	1 cut(s)	691
BsrI	ACTGG	3 cut(s)	605, 617, 666
BssMI	GATC	2 cut(s)	243, 376
Bst2UI	CCWGG	2 cut(s)	279, 509
Bst4CI	ACNGT	3 cut(s)	164, 491, 682
Bst6I	CTCTTC	1 cut(s)	439
BstC8I	GCNNGC	1 cut(s)	235
BstDEI	CTNAG	2 cut(s)	194, 363
BstF5I	GGATG	1 cut(s)	716
BstKTI	GATC	2 cut(s)	246, 379
BstMAI	GTCTC	2 cut(s)	439, 691
BstMBI	GATC	2 cut(s)	243, 376
BstMCI	CGRYCG	1 cut(s)	708
BstMWI	GCNNNNNNNGC	5 cut(s)	225, 234, 279, 351, 704
BstNI	CCWGG	2 cut(s)	279, 509
BstSCI	CCNGG	2 cut(s)	277, 507
BstV1I	GCAGC	2 cut(s)	200, 212
BstV2I	GAAGAC	1 cut(s)	385
BstZI	CGGCCG	1 cut(s)	705
BsuRI	GGCC	4 cut(s)	639, 675, 707, 738
BtsCI	GGATG	1 cut(s)	716
BtsI	GCAGTG	2 cut(s)	18, 294
BtsIMutI	CAGTG	4 cut(s)	18, 294, 673, 678
Cac8I	GCNNGC	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	511
CsiI	ACCWGGT	1 cut(s)	507
Csp6I	GTAC	2 cut(s)	172, 449
CviAII	CATG	3 cut(s)	59, 92, 589
CviQI	GTAC	2 cut(s)	172, 449
DdeI	CTNAG	2 cut(s)	194, 363
DpnI	GATC	2 cut(s)	245, 378
DpnII	GATC	2 cut(s)	243, 376
EaeI	YGGCCR	3 cut(s)	637, 673, 705
EagI	CGGCCG	1 cut(s)	705
Eam1104I	CTCTTC	1 cut(s)	439
EarI	CTCTTC	1 cut(s)	439
EclXI	CGGCCG	1 cut(s)	705
Eco31I	GGTCTC	1 cut(s)	691
Eco47I	GGWCC	1 cut(s)	511
Eco52I	CGGCCG	1 cut(s)	705
EcoRII	CCWGG	2 cut(s)	277, 507
FaeI	CATG	3 cut(s)	62, 95, 592
FalI	AAGNNNNNCTT	2 cut(s)	436, 468
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	3 cut(s)	58, 91, 588
FauI	CCCGC	1 cut(s)	221
Fnu4HI	GCNGC	4 cut(s)	189, 226, 676, 705
FokI	GGATG	1 cut(s)	723
Fsp4HI	GCNGC	4 cut(s)	189, 226, 676, 705
FspBI	CTAG	1 cut(s)	594
GluI	GCNGC	4 cut(s)	189, 226, 676, 705
GsaI	CCCAGC	1 cut(s)	388
HaeIII	GGCC	4 cut(s)	639, 675, 707, 738
HapII	CCGG	2 cut(s)	708, 735
Hin1II	CATG	3 cut(s)	62, 95, 592
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	1 cut(s)	423
HpaI	GTTAAC	1 cut(s)	85
HpaII	CCGG	2 cut(s)	708, 735
HphI	GGTGA	2 cut(s)	125, 551
Hpy166II	GTNNAC	2 cut(s)	85, 480
Hpy188I	TCNGA	3 cut(s)	42, 609, 722
Hpy188III	TCNNGA	1 cut(s)	570
Hpy8I	GTNNAC	2 cut(s)	85, 480
Hpy99I	CGWCG	1 cut(s)	638
HpyAV	CCTTC	2 cut(s)	284, 457
HpyCH4III	ACNGT	3 cut(s)	164, 491, 682
HpyCH4IV	ACGT	1 cut(s)	525
HpyCH4V	TGCA	2 cut(s)	326, 354
HpyF10VI	GCNNNNNNNGC	5 cut(s)	225, 234, 279, 351, 704
HpyF3I	CTNAG	2 cut(s)	194, 363
HpySE526I	ACGT	1 cut(s)	525
Hsp92II	CATG	3 cut(s)	62, 95, 592
KspAI	GTTAAC	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	243, 376
LmnI	GCTCC	1 cut(s)	137
Lsp1109I	GCAGC	2 cut(s)	200, 212
LweI	GCATC	1 cut(s)	106
MabI	ACCWGGT	1 cut(s)	507
MaeI	CTAG	1 cut(s)	594
MaeII	ACGT	1 cut(s)	525
MaeIII	GTNAC	3 cut(s)	292, 491, 658
MalI	GATC	2 cut(s)	245, 378
MboI	GATC	2 cut(s)	243, 376
MboII	GAAGA	2 cut(s)	385, 456
MluCI	AATT	3 cut(s)	304, 577, 743
MnlI	CCTC	8 cut(s)	68, 130, 324, 369, 372, 641, 656, 749
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	1 cut(s)	63
MspI	CCGG	2 cut(s)	708, 735
MspR9I	CCNGG	2 cut(s)	279, 509
MvaI	CCWGG	2 cut(s)	279, 509
MwoI	GCNNNNNNNGC	5 cut(s)	225, 234, 279, 351, 704
NdeII	GATC	2 cut(s)	243, 376
NlaIII	CATG	3 cut(s)	62, 95, 592
NlaIV	GGNNCC	1 cut(s)	272
NmuCI	GTSAC	3 cut(s)	292, 491, 658
PcsI	WCGNNNNNNNCGW	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	423
PkrI	GCNGC	4 cut(s)	190, 227, 677, 706
Psp1406I	AACGTT	1 cut(s)	525
Psp6I	CCWGG	2 cut(s)	277, 507
PspFI	CCCAGC	1 cut(s)	384
PspGI	CCWGG	2 cut(s)	277, 507
PspN4I	GGNNCC	1 cut(s)	272
PspPI	GGNCC	1 cut(s)	511
RsaI	GTAC	2 cut(s)	173, 450
RsaNI	GTAC	2 cut(s)	172, 449
RseI	CAYNNNNRTG	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	4 cut(s)	189, 226, 676, 705
Sau3AI	GATC	2 cut(s)	243, 376
Sau96I	GGNCC	1 cut(s)	511
ScrFI	CCNGG	2 cut(s)	279, 509
SexAI	ACCWGGT	1 cut(s)	507
SfaNI	GCATC	1 cut(s)	106
SinI	GGWCC	1 cut(s)	511
SmiMI	CAYNNNNRTG	1 cut(s)	63
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
Sse9I	AATT	3 cut(s)	304, 577, 743
SsiI	CCGC	4 cut(s)	228, 345, 676, 704
SspMI	CTAG	1 cut(s)	594
StyD4I	CCNGG	2 cut(s)	277, 507
TaaI	ACNGT	3 cut(s)	164, 491, 682
TaiI	ACGT	1 cut(s)	528
TaqI	TCGA	3 cut(s)	5, 375, 633
TasI	AATT	3 cut(s)	304, 577, 743
TauI	GCSGC	2 cut(s)	678, 707
TfiI	GAWTC	1 cut(s)	423
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	4 cut(s)	18, 301, 673, 685
TseFI	GTSAC	3 cut(s)	292, 491, 658
TseI	GCWGC	2 cut(s)	188, 225
Tsp45I	GTSAC	3 cut(s)	292, 491, 658
TspRI	CASTG	4 cut(s)	18, 301, 673, 685
VpaK11BI	GGWCC	1 cut(s)	511
XcmI	CCANNNNNNNNNTGG	1 cut(s)	464
XspI	CTAG	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.