Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003982

Physical Location & Seq

Genomic Coordinates Reverse (-)

15841791 .. 15843588

Gene Structure 1798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G195200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCAGTTCTTGGGCTTGCCTTGGTTGGTTTTCTTCTTCTTTCTCTGAGCTCCTCTGCTTATGGCTCTGATGGGGGCTGGGTTAATGCGCATGCCACTTTCTATGGAGGAGGTGATGCCTCTGGCACAATGGGCGGGGCTTGTGGATATGGCAACCTGTATAGCCAAGGGTATGGAACCAACACAGCAGCTCTGAGCACAGCCCTGTTCAACAATGGGCTAAGCTGCGGGGCTTGCTTTGAGATTAGGTGTGCGAGTGATCCAAAATGGTGTCTTCCAGGCTCAATTTTCGTCACAGCCACCAACTTCTGCCCTCCAAACAATGCCCTCCCCAACAATGCAGGCGGTTGGTGCAACCCTCCACAGCAACATTTTGATCTTGCCCAGCCAGTCTTCCAGCGGATTGCTCAATACAGAGCTGGGATTGTGCCTGTGTCTTACCGAAGGGTCCCATGCATAAAGAAGGGAGGCATAAGATTCACAATCAACGGCCACTCATACTTCAATCTGGTGCTGATCACAAACGTTGGCGGTGCCGGAGATGTTCATGCAGTTTCCATCAAAGGGTCAAAAACTGGTTGGCAAACCTTGTCTAGGAACTGGGGGCAGAATTGGCAGAGCAACTCTTATCTGAATGGCCAGAGTCTCTCCTTCAAGGTCACCACCAGCGACGGCCGCACCGTCGTCGCCAACAACGTCGCTCCTGCCGGCTGGTCATTTGGCCAGACATTCAGTGGCGTACAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

250

Amino Acids

26.22

Weight (kDa)

9.08

Isoelectric Point (pI)

26.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003982)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31140 FvH4_5g14760 FvH4_5g14760
malus_domestica	MD06G1195100.v1.1 MD13G1070200.v1.1 MD14G1202100.v1.1 MD16G1070600.v1.1
prunus_persica	Prupe.1G276700_v2.0.a1 Prupe.5G195200_v2.0.a1
pyrus_communis	pycom06g17260 pycom13g06300 pycom14g16740 pycom16g06140
rosa_chinensis	RchiOBHm_Chr4g0439541 RchiOBHm_Chr7g0181621
rosa_laevigata	RLG00000005178 RLG00000006260
rosa_multiflora	Rmu_sc0000988.1_g000016 Rmu_sc0007276.1_g000013
rosa_roxburghii	Rroxscaffold_3G00271840 Rroxscaffold_5G00380460
rosa_rugosa	Rorug04G0319400 Rorug06G0442600 Rorug06G0442600
rosa_samantha	Rh4AG370600 Rh4BG382400 Rh4CG397000 Rh7AG045000 Rh7BG044000 Rh7BG044100 Rh7CG045700
rosa_wichuraiana	Rw4G031590 Rw7G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	90
AccB1I	GGYRCC	1 cut(s)	533
AciI	CCGC	6 cut(s)	135, 228, 345, 400, 531, 676
AclI	AACGTT	1 cut(s)	525
AclWI	GGATC	1 cut(s)	254
AcoI	YGGCCR	4 cut(s)	490, 637, 673, 721
AfaI	GTAC	1 cut(s)	741
AfiI	CCNNNNNNNGG	2 cut(s)	564, 594
AgsI	TTSAA	3 cut(s)	211, 505, 655
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	4 cut(s)	51, 191, 225, 419
AluI	AGCT	4 cut(s)	51, 191, 225, 419
Alw21I	GWGCWC	2 cut(s)	53, 200
Alw26I	GTCTC	1 cut(s)	650
AlwI	GGATC	1 cut(s)	254
AoxI	GGCC	4 cut(s)	490, 637, 673, 721
ApeKI	GCWGC	2 cut(s)	188, 225
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	1 cut(s)	448
AsuHPI	GGTGA	2 cut(s)	125, 652
AvaII	GGWCC	1 cut(s)	448
BalI	TGGCCA	2 cut(s)	639, 723
BanI	GGYRCC	1 cut(s)	533
BanII	GRGCYC	1 cut(s)	53
BbsI	GAAGAC	2 cut(s)	266, 385
Bbv12I	GWGCWC	2 cut(s)	53, 200
BbvI	GCAGC	2 cut(s)	200, 212
BccI	CCATC	2 cut(s)	65, 566
BceAI	ACGGC	2 cut(s)	505, 688
BcgI	CGANNNNNNTGC	2 cut(s)	667, 701
BciT130I	CCWGG	1 cut(s)	279
BclI	TGATCA	1 cut(s)	516
BcoDI	GTCTC	1 cut(s)	650
BfaI	CTAG	1 cut(s)	594
BisI	GCNGC	3 cut(s)	189, 226, 676
BlpI	GCTNAGC	1 cut(s)	221
BlsI	GCNGC	3 cut(s)	190, 227, 677
Bme1390I	CCNGG	1 cut(s)	279
Bme18I	GGWCC	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	448
BmiI	GGNNCC	4 cut(s)	178, 449, 450, 535
BmrFI	CCNGG	1 cut(s)	279
BmrI	ACTGGG	1 cut(s)	610
BmsI	GCATC	1 cut(s)	106
BmuI	ACTGGG	1 cut(s)	610
BpiI	GAAGAC	2 cut(s)	266, 385
Bpu1102I	GCTNAGC	1 cut(s)	221
BsaJI	CCNNGG	2 cut(s)	21, 166
Bsc4I	CCNNNNNNNGG	2 cut(s)	564, 594
Bse118I	RCCGGY	1 cut(s)	707
Bse1I	ACTGG	3 cut(s)	389, 580, 605
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	2 cut(s)	21, 166
BseLI	CCNNNNNNNGG	2 cut(s)	564, 594
BseMII	CTCAG	2 cut(s)	38, 185
BseNI	ACTGG	3 cut(s)	389, 580, 605
BseRI	GAGGAG	2 cut(s)	43, 123
BseX3I	CGGCCG	1 cut(s)	673
BseXI	GCAGC	2 cut(s)	200, 212
BseYI	CCCAGC	3 cut(s)	78, 384, 419
Bsh1285I	CGRYCG	1 cut(s)	676
BshFI	GGCC	4 cut(s)	492, 639, 675, 723
BshNI	GGYRCC	1 cut(s)	533
BsiEI	CGRYCG	1 cut(s)	676
BsiHKAI	GWGCWC	2 cut(s)	53, 200
BsiSI	CCGG	2 cut(s)	537, 708
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	2 cut(s)	564, 594
BsmAI	GTCTC	1 cut(s)	650
BsmFI	GGGAC	1 cut(s)	434
BsnI	GGCC	4 cut(s)	492, 639, 675, 723
Bsp1286I	GDGCHC	2 cut(s)	53, 200
Bsp143I	GATC	3 cut(s)	259, 376, 516
Bsp1720I	GCTNAGC	1 cut(s)	221
BspACI	CCGC	6 cut(s)	135, 228, 345, 400, 531, 676
BspANI	GGCC	4 cut(s)	492, 639, 675, 723
BspCNI	CTCAG	2 cut(s)	39, 186
BspLI	GGNNCC	4 cut(s)	178, 449, 450, 535
BspPI	GGATC	1 cut(s)	254
BspT107I	GGYRCC	1 cut(s)	533
BsrFI	RCCGGY	1 cut(s)	707
BsrI	ACTGG	3 cut(s)	389, 580, 605
BssAI	RCCGGY	1 cut(s)	707
BssECI	CCNNGG	2 cut(s)	21, 166
BssMI	GATC	3 cut(s)	259, 376, 516
BssT1I	CCWWGG	2 cut(s)	21, 166
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	1 cut(s)	682
BstC8I	GCNNGC	5 cut(s)	18, 93, 235, 343, 709
BstDEI	CTNAG	3 cut(s)	47, 194, 221
BstEII	GGTNACC	1 cut(s)	658
BstENI	CCTNNNNNAGG	1 cut(s)	592
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	3 cut(s)	262, 379, 519
BstMAI	GTCTC	1 cut(s)	650
BstMBI	GATC	3 cut(s)	259, 376, 516
BstMCI	CGRYCG	1 cut(s)	676
BstMWI	GCNNNNNNNGC	5 cut(s)	132, 234, 351, 613, 675
BstNI	CCWGG	1 cut(s)	279
BstNSI	RCATGY	1 cut(s)	95
BstPI	GGTNACC	1 cut(s)	658
BstSCI	CCNGG	1 cut(s)	277
BstV1I	GCAGC	2 cut(s)	200, 212
BstV2I	GAAGAC	2 cut(s)	266, 385
BstXI	CCANNNNNNTGG	1 cut(s)	173
BstZI	CGGCCG	1 cut(s)	673
BsuRI	GGCC	4 cut(s)	492, 639, 675, 723
BtsIMutI	CAGTG	1 cut(s)	739
Cac8I	GCNNGC	5 cut(s)	18, 93, 235, 343, 709
CfoI	GCGC	1 cut(s)	91
Cfr10I	RCCGGY	1 cut(s)	707
Cfr13I	GGNCC	1 cut(s)	448
Csp6I	GTAC	1 cut(s)	740
CviAII	CATG	3 cut(s)	92, 453, 548
CviQI	GTAC	1 cut(s)	740
DdeI	CTNAG	3 cut(s)	47, 194, 221
DpnI	GATC	3 cut(s)	261, 378, 518
DpnII	GATC	3 cut(s)	259, 376, 516
EaeI	YGGCCR	4 cut(s)	490, 637, 673, 721
EagI	CGGCCG	1 cut(s)	673
Ecl136II	GAGCTC	1 cut(s)	51
EclXI	CGGCCG	1 cut(s)	673
Eco130I	CCWWGG	2 cut(s)	21, 166
Eco24I	GRGCYC	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	448
Eco52I	CGGCCG	1 cut(s)	673
Eco53kI	GAGCTC	1 cut(s)	51
Eco91I	GGTNACC	1 cut(s)	658
EcoICRI	GAGCTC	1 cut(s)	51
EcoNI	CCTNNNNNAGG	1 cut(s)	592
EcoO109I	RGGNCCY	1 cut(s)	448
EcoO65I	GGTNACC	1 cut(s)	658
EcoRII	CCWGG	1 cut(s)	277
EcoT14I	CCWWGG	2 cut(s)	21, 166
EcoT22I	ATGCAT	1 cut(s)	458
EcoT38I	GRGCYC	1 cut(s)	53
ErhI	CCWWGG	2 cut(s)	21, 166
FaeI	CATG	3 cut(s)	95, 456, 551
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	3 cut(s)	91, 452, 547
FauI	CCCGC	2 cut(s)	128, 221
FbaI	TGATCA	1 cut(s)	516
Fnu4HI	GCNGC	3 cut(s)	189, 226, 676
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	3 cut(s)	189, 226, 676
FspAI	RTGCGCAY	1 cut(s)	90
FspBI	CTAG	1 cut(s)	594
FspI	TGCGCA	1 cut(s)	90
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	3 cut(s)	189, 226, 676
GsaI	CCCAGC	3 cut(s)	82, 388, 423
HaeIII	GGCC	4 cut(s)	492, 639, 675, 723
HapII	CCGG	2 cut(s)	537, 708
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	3 cut(s)	95, 456, 551
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HinfI	GANTC	2 cut(s)	477, 643
HpaII	CCGG	2 cut(s)	537, 708
HphI	GGTGA	2 cut(s)	125, 652
Hpy188I	TCNGA	5 cut(s)	48, 70, 195, 633, 749
Hpy99I	CGWCG	4 cut(s)	674, 686, 689, 701
HpyAV	CCTTC	3 cut(s)	438, 457, 661
HpyCH4III	ACNGT	1 cut(s)	682
HpyCH4IV	ACGT	2 cut(s)	525, 696
HpyCH4V	TGCA	4 cut(s)	341, 354, 456, 551
HpyF10VI	GCNNNNNNNGC	5 cut(s)	132, 234, 351, 613, 675
HpyF3I	CTNAG	3 cut(s)	47, 194, 221
HpySE526I	ACGT	2 cut(s)	525, 696
Hsp92II	CATG	3 cut(s)	95, 456, 551
HspAI	GCGC	1 cut(s)	89
KflI	GGGWCCC	1 cut(s)	448
KroI	GCCGGC	1 cut(s)	707
KroNI	GCCGGC	1 cut(s)	709
Ksp22I	TGATCA	1 cut(s)	516
Kzo9I	GATC	3 cut(s)	259, 376, 516
LmnI	GCTCC	2 cut(s)	56, 706
Lsp1109I	GCAGC	2 cut(s)	200, 212
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	1 cut(s)	594
MaeII	ACGT	2 cut(s)	525, 696
MaeIII	GTNAC	2 cut(s)	292, 658
MalI	GATC	3 cut(s)	261, 378, 518
MboI	GATC	3 cut(s)	259, 376, 516
MboII	GAAGA	4 cut(s)	26, 29, 266, 385
MhlI	GDGCHC	2 cut(s)	53, 200
MlsI	TGGCCA	2 cut(s)	639, 723
MluCI	AATT	3 cut(s)	285, 610, 743
MluNI	TGGCCA	2 cut(s)	639, 723
MlyI	GAGTC	1 cut(s)	652
MnlI	CCTC	8 cut(s)	64, 101, 104, 130, 324, 338, 369, 461
Mox20I	TGGCCA	2 cut(s)	639, 723
Mph1103I	ATGCAT	1 cut(s)	458
MroNI	GCCGGC	1 cut(s)	707
MscI	TGGCCA	2 cut(s)	639, 723
MseI	TTAA	1 cut(s)	84
Msp20I	TGGCCA	2 cut(s)	639, 723
MspA1I	CMGCKG	1 cut(s)	400
MspI	CCGG	2 cut(s)	537, 708
MspR9I	CCNGG	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	279
MwoI	GCNNNNNNNGC	5 cut(s)	132, 234, 351, 613, 675
NaeI	GCCGGC	1 cut(s)	709
NdeII	GATC	3 cut(s)	259, 376, 516
NgoMIV	GCCGGC	1 cut(s)	707
NlaIII	CATG	3 cut(s)	95, 456, 551
NlaIV	GGNNCC	4 cut(s)	178, 449, 450, 535
NmuCI	GTSAC	2 cut(s)	292, 658
NsbI	TGCGCA	1 cut(s)	90
NsiI	ATGCAT	1 cut(s)	458
NspI	RCATGY	1 cut(s)	95
PaeI	GCATGC	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	2 cut(s)	678, 693
PdiI	GCCGGC	1 cut(s)	709
PfeI	GAWTC	1 cut(s)	477
PkrI	GCNGC	3 cut(s)	190, 227, 677
PleI	GAGTC	1 cut(s)	651
PpsI	GAGTC	1 cut(s)	651
PpuMI	RGGWCCY	1 cut(s)	448
Psp124BI	GAGCTC	1 cut(s)	53
Psp1406I	AACGTT	1 cut(s)	525
Psp5II	RGGWCCY	1 cut(s)	448
Psp6I	CCWGG	1 cut(s)	277
PspEI	GGTNACC	1 cut(s)	658
PspFI	CCCAGC	3 cut(s)	78, 384, 419
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	4 cut(s)	178, 449, 450, 535
PspPI	GGNCC	1 cut(s)	448
PspPPI	RGGWCCY	1 cut(s)	448
RsaI	GTAC	1 cut(s)	741
RsaNI	GTAC	1 cut(s)	740
SacI	GAGCTC	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	3 cut(s)	189, 226, 676
Sau3AI	GATC	3 cut(s)	259, 376, 516
Sau96I	GGNCC	1 cut(s)	448
SchI	GAGTC	1 cut(s)	652
ScrFI	CCNGG	1 cut(s)	279
SduI	GDGCHC	2 cut(s)	53, 200
SfaNI	GCATC	1 cut(s)	106
SinI	GGWCC	1 cut(s)	448
SphI	GCATGC	1 cut(s)	95
Sse9I	AATT	3 cut(s)	285, 610, 743
SsiI	CCGC	6 cut(s)	135, 228, 345, 400, 531, 676
SspMI	CTAG	1 cut(s)	594
SstI	GAGCTC	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	277
StyI	CCWWGG	2 cut(s)	21, 166
TaaI	ACNGT	1 cut(s)	682
TaiI	ACGT	2 cut(s)	528, 699
TasI	AATT	3 cut(s)	285, 610, 743
TauI	GCSGC	1 cut(s)	678
TfiI	GAWTC	1 cut(s)	477
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	739
TseFI	GTSAC	2 cut(s)	292, 658
TseI	GCWGC	2 cut(s)	188, 225
Tsp45I	GTSAC	2 cut(s)	292, 658
TspDTI	ATGAA	1 cut(s)	536
TspRI	CASTG	1 cut(s)	739
VpaK11BI	GGWCC	1 cut(s)	448
XagI	CCTNNNNNAGG	1 cut(s)	592
XceI	RCATGY	1 cut(s)	95
XcmI	CCANNNNNNNNNTGG	1 cut(s)	731
XspI	CTAG	1 cut(s)	594
Zsp2I	ATGCAT	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.