Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003982

Physical Location & Seq

Genomic Coordinates Forward (+)

3922034 .. 3923286

Gene Structure 1253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g06140.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTTGGTGGCCTCTGCGCATGCTTACGGCGGAGGGTGGGTTAACGCTCGCGCCACTTTCTACGGCGGCGGTGACGCTTCTGGCACAATGGGCGGAGCTTGTGGGTACGGCAACCTCTACAGCCAGGGGTACGGAACCAACACGGCGGCCCTGAGCACTGCTCTGTTCAACAATGGGCTGGGGTGCGGATCTTGCTACGAGATTAGGTGTGTGAACGACCCCAAGTGGTGCCTGCCCGGCTCCATTGTGGTCACCGCCACCAATTTCTGCCCGCCAAACAACGCCCTCCCCAACAATGCCGGCGGCTGGTGCAACCCTCCCCAGCACCACTTCGACCTCTCTCAGCCTATCTTCCAGCACATTGCCCAATACAAAGCCGGAGTTGTGCCTGTGTCCTACAGAAGGGTACCCTGCAGGAGAAGGGGAGGCATCAGATTCACAATCAACGGTCACTCCTACTTCAACCTGGTCCTCATCACAAACGTTGGTGGTGCCGGTGATGTGCACTCTGTTTCCATCAAGGGGTCCAGATCCGGCTGGCAAGCAATGTCCAGAAACTGGGGGCAAAACTGGCAATCCAACAGCTACCTCAACGGCCAAGCCCTCTCTTTCAAGGTCACAACCAGTGACGGCCGTACTGTTGTGTCGTACAATGCTGCCCCAGCCGGGTGGTCCTTTGGGCAGACCTACAGTGGTGCCCAATTCCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

237

Amino Acids

25.14

Weight (kDa)

9.4

Isoelectric Point (pI)

33.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003982)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31140 FvH4_5g14760 FvH4_5g14760
malus_domestica	MD06G1195100.v1.1 MD13G1070200.v1.1 MD14G1202100.v1.1 MD16G1070600.v1.1
prunus_persica	Prupe.1G276700_v2.0.a1 Prupe.5G195200_v2.0.a1
pyrus_communis	pycom06g17260 pycom13g06300 pycom14g16740 pycom16g06140
rosa_chinensis	RchiOBHm_Chr4g0439541 RchiOBHm_Chr7g0181621
rosa_laevigata	RLG00000005178 RLG00000006260
rosa_multiflora	Rmu_sc0000988.1_g000016 Rmu_sc0007276.1_g000013
rosa_roxburghii	Rroxscaffold_3G00271840 Rroxscaffold_5G00380460
rosa_rugosa	Rorug04G0319400 Rorug06G0442600 Rorug06G0442600
rosa_samantha	Rh4AG370600 Rh4BG382400 Rh4CG397000 Rh7AG045000 Rh7BG044000 Rh7BG044100 Rh7CG045700
rosa_wichuraiana	Rw4G031590 Rw7G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	18
Acc65I	GGTACC	1 cut(s)	406
AccB1I	GGYRCC	4 cut(s)	228, 406, 491, 695
AccB7I	CCANNNNNTGG	1 cut(s)	558
AccII	CGCG	1 cut(s)	51
AclI	AACGTT	1 cut(s)	483
AclWI	GGATC	2 cut(s)	196, 525
AcoI	YGGCCR	2 cut(s)	595, 631
AfaI	GTAC	5 cut(s)	107, 131, 408, 637, 650
AfiI	CCNNNNNNNGG	5 cut(s)	306, 402, 522, 558, 666
AgsI	TTSAA	3 cut(s)	169, 463, 613
AjnI	CCWGG	2 cut(s)	123, 465
AluBI	AGCT	2 cut(s)	98, 585
AluI	AGCT	2 cut(s)	98, 585
Alw21I	GWGCWC	2 cut(s)	158, 507
Alw44I	GTGCAC	1 cut(s)	503
AlwI	GGATC	2 cut(s)	196, 525
AlwNI	CAGNNNCTG	1 cut(s)	558
AoxI	GGCC	4 cut(s)	9, 147, 595, 631
ApaLI	GTGCAC	1 cut(s)	503
ApeKI	GCWGC	1 cut(s)	656
Asp718I	GGTACC	1 cut(s)	406
AspLEI	GCGC	2 cut(s)	19, 53
AspS9I	GGNCC	4 cut(s)	148, 469, 525, 672
AsuC2I	CCSGG	2 cut(s)	237, 667
AsuHPI	GGTGA	3 cut(s)	83, 244, 509
AvaII	GGWCC	3 cut(s)	469, 525, 672
BaeGI	GKGCMC	2 cut(s)	507, 700
BanI	GGYRCC	4 cut(s)	228, 406, 491, 695
Bbv12I	GWGCWC	2 cut(s)	158, 507
BbvI	GCAGC	1 cut(s)	643
BccI	CCATC	1 cut(s)	524
BceAI	ACGGC	7 cut(s)	43, 79, 124, 159, 610, 618, 646
BciT130I	CCWGG	2 cut(s)	125, 467
BcnI	CCSGG	2 cut(s)	237, 667
BfaI	CTAG	1 cut(s)	709
BfmI	CTRYAG	4 cut(s)	118, 397, 412, 688
BglI	GCCNNNNNGGC	1 cut(s)	237
BisI	GCNGC	4 cut(s)	67, 147, 304, 657
BlsI	GCNGC	4 cut(s)	68, 148, 305, 658
Bme1390I	CCNGG	4 cut(s)	125, 237, 467, 667
Bme18I	GGWCC	3 cut(s)	469, 525, 672
BmgT120I	GGNCC	4 cut(s)	148, 469, 525, 672
BmiI	GGNNCC	7 cut(s)	136, 230, 241, 408, 493, 526, 697
BmrFI	CCNGG	4 cut(s)	125, 237, 467, 667
BmrI	ACTGGG	1 cut(s)	568
BmsI	GCATC	1 cut(s)	438
BmuI	ACTGGG	1 cut(s)	568
BplI	GAGNNNNNCTC	2 cut(s)	145, 177
Bpu10I	CCTNAGC	1 cut(s)	152
BpuMI	CCSGG	2 cut(s)	237, 667
BsaJI	CCNNGG	1 cut(s)	124
BsaXI	ACNNNNNCTCC	4 cut(s)	24, 54, 437, 467
Bsc4I	CCNNNNNNNGG	5 cut(s)	306, 402, 522, 558, 666
Bse118I	RCCGGY	2 cut(s)	299, 494
Bse1I	ACTGG	3 cut(s)	563, 575, 624
Bse3DI	GCAATG	2 cut(s)	360, 552
BseBI	CCWGG	2 cut(s)	125, 467
BseDI	CCNNGG	1 cut(s)	124
BseLI	CCNNNNNNNGG	5 cut(s)	306, 402, 522, 558, 666
BseMI	GCAATG	2 cut(s)	360, 552
BseMII	CTCAG	2 cut(s)	143, 356
BseNI	ACTGG	3 cut(s)	563, 575, 624
BseSI	GKGCMC	2 cut(s)	507, 700
BseX3I	CGGCCG	1 cut(s)	631
BseXI	GCAGC	1 cut(s)	643
BseYI	CCCAGC	3 cut(s)	178, 321, 661
Bsh1236I	CGCG	1 cut(s)	51
Bsh1285I	CGRYCG	1 cut(s)	634
BshFI	GGCC	4 cut(s)	11, 149, 597, 633
BshNI	GGYRCC	4 cut(s)	228, 406, 491, 695
BsiEI	CGRYCG	1 cut(s)	634
BsiHKAI	GWGCWC	2 cut(s)	158, 507
BsiSI	CCGG	6 cut(s)	237, 300, 378, 495, 534, 666
BslI	CCNNNNNNNGG	5 cut(s)	306, 402, 522, 558, 666
BsnI	GGCC	4 cut(s)	11, 149, 597, 633
Bsp1286I	GDGCHC	3 cut(s)	158, 507, 700
Bsp143I	GATC	2 cut(s)	188, 530
BspANI	GGCC	4 cut(s)	11, 149, 597, 633
BspCNI	CTCAG	2 cut(s)	144, 355
BspFNI	CGCG	1 cut(s)	51
BspLI	GGNNCC	7 cut(s)	136, 230, 241, 408, 493, 526, 697
BspMAI	CTGCAG	1 cut(s)	416
BspPI	GGATC	2 cut(s)	196, 525
BspT107I	GGYRCC	4 cut(s)	228, 406, 491, 695
BsrDI	GCAATG	2 cut(s)	360, 552
BsrFI	RCCGGY	2 cut(s)	299, 494
BsrI	ACTGG	3 cut(s)	563, 575, 624
BssAI	RCCGGY	2 cut(s)	299, 494
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	2 cut(s)	188, 530
Bst2UI	CCWGG	2 cut(s)	125, 467
Bst4CI	ACNGT	3 cut(s)	449, 640, 692
BstC8I	GCNNGC	7 cut(s)	21, 49, 233, 272, 301, 539, 543
BstDEI	CTNAG	2 cut(s)	152, 342
BstEII	GGTNACC	1 cut(s)	250
BstENI	CCTNNNNNAGG	1 cut(s)	400
BstFNI	CGCG	1 cut(s)	51
BstHHI	GCGC	2 cut(s)	19, 53
BstKTI	GATC	2 cut(s)	191, 533
BstMBI	GATC	2 cut(s)	188, 530
BstMCI	CGRYCG	1 cut(s)	634
BstMWI	GCNNNNNNNGC	6 cut(s)	90, 192, 237, 309, 571, 662
BstNI	CCWGG	2 cut(s)	125, 467
BstNSI	RCATGY	1 cut(s)	23
BstPI	GGTNACC	1 cut(s)	250
BstSCI	CCNGG	4 cut(s)	123, 235, 465, 665
BstSFI	CTRYAG	4 cut(s)	118, 397, 412, 688
BstSLI	GKGCMC	2 cut(s)	507, 700
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	643
BstX2I	RGATCY	2 cut(s)	188, 530
BstXI	CCANNNNNNTGG	1 cut(s)	669
BstYI	RGATCY	2 cut(s)	188, 530
BstZI	CGGCCG	1 cut(s)	631
BsuRI	GGCC	4 cut(s)	11, 149, 597, 633
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	3 cut(s)	156, 631, 697
Cac8I	GCNNGC	7 cut(s)	21, 49, 233, 272, 301, 539, 543
CaiI	CAGNNNCTG	1 cut(s)	558
CfoI	GCGC	2 cut(s)	19, 53
Cfr10I	RCCGGY	2 cut(s)	299, 494
Cfr13I	GGNCC	4 cut(s)	148, 469, 525, 672
CseI	GACGC	1 cut(s)	83
CsiI	ACCWGGT	1 cut(s)	465
Csp6I	GTAC	5 cut(s)	106, 130, 407, 636, 649
CviAII	CATG	1 cut(s)	20
CviQI	GTAC	5 cut(s)	106, 130, 407, 636, 649
DdeI	CTNAG	2 cut(s)	152, 342
DpnI	GATC	2 cut(s)	190, 532
DpnII	GATC	2 cut(s)	188, 530
EaeI	YGGCCR	2 cut(s)	595, 631
EagI	CGGCCG	1 cut(s)	631
EciI	GGCGGA	2 cut(s)	45, 108
EclXI	CGGCCG	1 cut(s)	631
Eco47I	GGWCC	3 cut(s)	469, 525, 672
Eco52I	CGGCCG	1 cut(s)	631
Eco91I	GGTNACC	1 cut(s)	250
EcoNI	CCTNNNNNAGG	1 cut(s)	400
EcoO65I	GGTNACC	1 cut(s)	250
EcoRII	CCWGG	2 cut(s)	123, 465
FaeI	CATG	1 cut(s)	23
FaiI	YATR	1 cut(s)	21
FatI	CATG	1 cut(s)	19
FauI	CCCGC	1 cut(s)	279
Fnu4HI	GCNGC	4 cut(s)	67, 147, 304, 657
Fsp4HI	GCNGC	4 cut(s)	67, 147, 304, 657
FspBI	CTAG	1 cut(s)	709
FspI	TGCGCA	1 cut(s)	18
GlaI	GCGC	2 cut(s)	18, 52
GluI	GCNGC	4 cut(s)	67, 147, 304, 657
GsaI	CCCAGC	3 cut(s)	182, 325, 665
HaeIII	GGCC	4 cut(s)	11, 149, 597, 633
HapII	CCGG	6 cut(s)	237, 300, 378, 495, 534, 666
HgaI	GACGC	1 cut(s)	83
HhaI	GCGC	2 cut(s)	19, 53
Hin1II	CATG	1 cut(s)	23
Hin6I	GCGC	2 cut(s)	17, 51
HinP1I	GCGC	2 cut(s)	17, 51
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	1 cut(s)	435
HpaI	GTTAAC	1 cut(s)	43
HpaII	CCGG	6 cut(s)	237, 300, 378, 495, 534, 666
HphI	GGTGA	3 cut(s)	83, 244, 509
Hpy166II	GTNNAC	3 cut(s)	43, 214, 505
Hpy188I	TCNGA	1 cut(s)	434
Hpy188III	TCNNGA	2 cut(s)	528, 552
Hpy8I	GTNNAC	3 cut(s)	43, 214, 505
HpyAV	CCTTC	2 cut(s)	396, 414
HpyCH4III	ACNGT	3 cut(s)	449, 640, 692
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	3 cut(s)	312, 414, 505
HpyF10VI	GCNNNNNNNGC	6 cut(s)	90, 192, 237, 309, 571, 662
HpyF3I	CTNAG	2 cut(s)	152, 342
HpySE526I	ACGT	1 cut(s)	483
Hsp92II	CATG	1 cut(s)	23
HspAI	GCGC	2 cut(s)	17, 51
KpnI	GGTACC	1 cut(s)	410
KroI	GCCGGC	1 cut(s)	299
KroNI	GCCGGC	1 cut(s)	301
KspAI	GTTAAC	1 cut(s)	43
Kzo9I	GATC	2 cut(s)	188, 530
LmnI	GCTCC	2 cut(s)	95, 245
Lsp1109I	GCAGC	1 cut(s)	643
LweI	GCATC	1 cut(s)	438
MabI	ACCWGGT	1 cut(s)	465
MaeI	CTAG	1 cut(s)	709
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	5 cut(s)	71, 250, 449, 616, 626
MalI	GATC	2 cut(s)	190, 532
MboI	GATC	2 cut(s)	188, 530
MboII	GAAGA	1 cut(s)	343
MflI	RGATCY	2 cut(s)	188, 530
MhlI	GDGCHC	3 cut(s)	158, 507, 700
MluCI	AATT	2 cut(s)	262, 701
MmeI	TCCRAC	1 cut(s)	603
MroNI	GCCGGC	1 cut(s)	299
MseI	TTAA	1 cut(s)	42
MspI	CCGG	6 cut(s)	237, 300, 378, 495, 534, 666
MspR9I	CCNGG	4 cut(s)	125, 237, 467, 667
MvaI	CCWGG	2 cut(s)	125, 467
MvnI	CGCG	1 cut(s)	51
MwoI	GCNNNNNNNGC	6 cut(s)	90, 192, 237, 309, 571, 662
NaeI	GCCGGC	1 cut(s)	301
NciI	CCSGG	2 cut(s)	237, 667
NdeII	GATC	2 cut(s)	188, 530
NgoMIV	GCCGGC	1 cut(s)	299
NlaIII	CATG	1 cut(s)	23
NlaIV	GGNNCC	7 cut(s)	136, 230, 241, 408, 493, 526, 697
NmuCI	GTSAC	5 cut(s)	71, 250, 449, 616, 626
NsbI	TGCGCA	1 cut(s)	18
NspI	RCATGY	1 cut(s)	23
PaeI	GCATGC	1 cut(s)	23
PdiI	GCCGGC	1 cut(s)	301
PfeI	GAWTC	1 cut(s)	435
PflMI	CCANNNNNTGG	1 cut(s)	558
PkrI	GCNGC	4 cut(s)	68, 148, 305, 658
Psp1406I	AACGTT	1 cut(s)	483
Psp6I	CCWGG	2 cut(s)	123, 465
PspEI	GGTNACC	1 cut(s)	250
PspFI	CCCAGC	3 cut(s)	178, 321, 661
PspGI	CCWGG	2 cut(s)	123, 465
PspN4I	GGNNCC	7 cut(s)	136, 230, 241, 408, 493, 526, 697
PspPI	GGNCC	4 cut(s)	148, 469, 525, 672
PstI	CTGCAG	1 cut(s)	416
PstNI	CAGNNNCTG	1 cut(s)	558
PsuI	RGATCY	2 cut(s)	188, 530
RsaI	GTAC	5 cut(s)	107, 131, 408, 637, 650
RsaNI	GTAC	5 cut(s)	106, 130, 407, 636, 649
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	4 cut(s)	67, 147, 304, 657
Sau3AI	GATC	2 cut(s)	188, 530
Sau96I	GGNCC	4 cut(s)	148, 469, 525, 672
SbfI	CCTGCAGG	1 cut(s)	416
ScrFI	CCNGG	4 cut(s)	125, 237, 467, 667
SdaI	CCTGCAGG	1 cut(s)	416
SduI	GDGCHC	3 cut(s)	158, 507, 700
SexAI	ACCWGGT	1 cut(s)	465
SfaNI	GCATC	1 cut(s)	438
SfcI	CTRYAG	4 cut(s)	118, 397, 412, 688
SinI	GGWCC	3 cut(s)	469, 525, 672
SphI	GCATGC	1 cut(s)	23
Sse8387I	CCTGCAGG	1 cut(s)	416
Sse9I	AATT	2 cut(s)	262, 701
SspMI	CTAG	1 cut(s)	709
StyD4I	CCNGG	4 cut(s)	123, 235, 465, 665
TaaI	ACNGT	3 cut(s)	449, 640, 692
TaiI	ACGT	1 cut(s)	486
TaqI	TCGA	1 cut(s)	333
TasI	AATT	2 cut(s)	262, 701
TauI	GCSGC	3 cut(s)	69, 149, 306
TfiI	GAWTC	1 cut(s)	435
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	3 cut(s)	163, 631, 697
TseFI	GTSAC	5 cut(s)	71, 250, 449, 616, 626
TseI	GCWGC	1 cut(s)	656
Tsp45I	GTSAC	5 cut(s)	71, 250, 449, 616, 626
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	3 cut(s)	163, 631, 697
Van91I	CCANNNNNTGG	1 cut(s)	558
VneI	GTGCAC	1 cut(s)	503
VpaK11BI	GGWCC	3 cut(s)	469, 525, 672
XagI	CCTNNNNNAGG	1 cut(s)	400
XceI	RCATGY	1 cut(s)	23
XspI	CTAG	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.