Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003982

Physical Location & Seq

Genomic Coordinates Forward (+)

64654574 .. 64655562

Gene Structure 989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG397000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCTTCTGCTGTGTTTTTCTTGGTGGGTCTTCTTGCAATGGTGACCTGTGCGCATGCTTATGGTGGTGGTGGTGGTTGGGTTAACGCTCGTGCCACTTTCTATGGTGGTGGTGATGCTTCTGGAACAATGGGTGGTGCTTGTGGGTATGGAAACCTCTACAGCCAGGGGTATGGTACAAACACTGCTGCTCTGAGCACTGCTCTGTTCAACAATGGGCTGGGATGTGGGTCTTGCTATGAAATTAGGTGTGTGAATGACCCAAAATGGTGCCTTCCCGGCTCCATTGTGGTCACAGCCACTAATTTCTGCCCTCCAAACAATGCCCTACCTAACAATGCTGGGGGATGGTGCAACCCTCCTCAGCATCACTTTGACCTCTCTCAACCTGTATTCCAGCACATTGCTCAATACAAAGCTGGAGTTGTCCCTGTTTCTTACAGAAGGGTACCCTGCAGCAGAAGGGGAGGCATCAGATTCACCATCAATGGCCACTCCTACTTCAACCTGGTTTTGATCACAAACGTTGGTGGTGCTGGTGATGTGCACTCTGTTTCAGTCAAAGGGTCCAGAACCGGTTGGCAACCAATGTCCAGAAACTGGGGGCAAAACTGGCAAAGCAACTCATATCTGAATGGGCAAGCCCTATCCTTCAAGGTCACAACCAGTGATGGCCGCACTGTGGTGTCCTACAATGCTGCCCCAGCTCGTTGGTCCTTTGGCCAGACCTTCAGTGGTGCCCAGTTCCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

250

Amino Acids

26.53

Weight (kDa)

9.35

Isoelectric Point (pI)

33.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	31 - 154	9.1e-10	EXPB1-like domain 1
DPBB_1	PF03330	62 - 147	9.1e-24	Lytic transglycolase
Expansin_C	PF01357	158 - 235	9.9e-34	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003982)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31140 FvH4_5g14760 FvH4_5g14760
malus_domestica	MD06G1195100.v1.1 MD13G1070200.v1.1 MD14G1202100.v1.1 MD16G1070600.v1.1
prunus_persica	Prupe.1G276700_v2.0.a1 Prupe.5G195200_v2.0.a1
pyrus_communis	pycom06g17260 pycom13g06300 pycom14g16740 pycom16g06140
rosa_chinensis	RchiOBHm_Chr4g0439541 RchiOBHm_Chr7g0181621
rosa_laevigata	RLG00000005178 RLG00000006260
rosa_multiflora	Rmu_sc0000988.1_g000016 Rmu_sc0007276.1_g000013
rosa_roxburghii	Rroxscaffold_3G00271840 Rroxscaffold_5G00380460
rosa_rugosa	Rorug04G0319400 Rorug06G0442600 Rorug06G0442600
rosa_samantha	Rh4AG370600 Rh4BG382400 Rh4CG397000 Rh7AG045000 Rh7BG044000 Rh7BG044100 Rh7CG045700
rosa_wichuraiana	Rw4G031590 Rw7G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	54
Acc65I	GGTACC	1 cut(s)	448
AccB1I	GGYRCC	3 cut(s)	270, 448, 737
AccB7I	CCANNNNNTGG	1 cut(s)	600
AciI	CCGC	2 cut(s)	676, 748
AclI	AACGTT	1 cut(s)	525
AcoI	YGGCCR	3 cut(s)	490, 673, 721
AcuI	CTGAAG	1 cut(s)	715
AfaI	GTAC	2 cut(s)	178, 450
AfiI	CCNNNNNNNGG	2 cut(s)	600, 682
AgeI	ACCGGT	1 cut(s)	575
AgsI	TTSAA	3 cut(s)	211, 505, 655
AjnI	CCWGG	2 cut(s)	165, 507
AleI	CACNNNNGTG	1 cut(s)	683
AluBI	AGCT	2 cut(s)	419, 707
AluI	AGCT	2 cut(s)	419, 707
Alw21I	GWGCWC	2 cut(s)	200, 549
Alw44I	GTGCAC	1 cut(s)	545
AlwNI	CAGNNNCTG	1 cut(s)	600
AoxI	GGCC	3 cut(s)	490, 673, 721
ApaLI	GTGCAC	1 cut(s)	545
ApeKI	GCWGC	3 cut(s)	188, 456, 698
AsiGI	ACCGGT	1 cut(s)	575
Asp718I	GGTACC	1 cut(s)	448
AspLEI	GCGC	1 cut(s)	55
AspS9I	GGNCC	2 cut(s)	567, 714
AsuC2I	CCSGG	1 cut(s)	279
AsuHPI	GGTGA	4 cut(s)	55, 125, 472, 551
AvaII	GGWCC	2 cut(s)	567, 714
BaeGI	GKGCMC	2 cut(s)	549, 742
BalI	TGGCCA	2 cut(s)	492, 723
BanI	GGYRCC	3 cut(s)	270, 448, 737
BauI	CACGAG	1 cut(s)	90
BbsI	GAAGAC	1 cut(s)	23
Bbv12I	GWGCWC	2 cut(s)	200, 549
BbvCI	CCTCAGC	1 cut(s)	363
BbvI	GCAGC	3 cut(s)	175, 468, 685
BccI	CCATC	3 cut(s)	342, 491, 665
BciT130I	CCWGG	2 cut(s)	167, 509
BclI	TGATCA	1 cut(s)	516
BcnI	CCSGG	1 cut(s)	279
BfmI	CTRYAG	2 cut(s)	160, 454
BglI	GCCNNNNNGGC	1 cut(s)	279
BisI	GCNGC	4 cut(s)	189, 457, 676, 699
BlsI	GCNGC	4 cut(s)	190, 458, 677, 700
Bme1390I	CCNGG	3 cut(s)	167, 279, 509
Bme18I	GGWCC	2 cut(s)	567, 714
BmgT120I	GGNCC	2 cut(s)	567, 714
BmiI	GGNNCC	5 cut(s)	272, 283, 450, 568, 739
BmrFI	CCNGG	3 cut(s)	167, 279, 509
BmrI	ACTGGG	2 cut(s)	610, 736
BmsI	GCATC	3 cut(s)	106, 376, 480
BmuI	ACTGGG	2 cut(s)	610, 736
BpiI	GAAGAC	1 cut(s)	23
BplI	GAGNNNNNCTC	2 cut(s)	187, 219
BpmI	CTGGAG	1 cut(s)	441
Bpu10I	CCTNAGC	1 cut(s)	363
BpuMI	CCSGG	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	166
BsaWI	WCCGGW	1 cut(s)	575
Bsc4I	CCNNNNNNNGG	2 cut(s)	600, 682
Bse118I	RCCGGY	1 cut(s)	575
Bse1I	ACTGG	4 cut(s)	605, 617, 666, 742
Bse3DI	GCAATG	2 cut(s)	45, 402
BseBI	CCWGG	2 cut(s)	167, 509
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	2 cut(s)	230, 353
BseLI	CCNNNNNNNGG	2 cut(s)	600, 682
BseMI	GCAATG	2 cut(s)	45, 402
BseMII	CTCAG	2 cut(s)	185, 377
BseNI	ACTGG	4 cut(s)	605, 617, 666, 742
BseRI	GAGGAG	1 cut(s)	351
BseSI	GKGCMC	2 cut(s)	549, 742
BseXI	GCAGC	3 cut(s)	175, 468, 685
BseYI	CCCAGC	3 cut(s)	220, 341, 703
BshFI	GGCC	3 cut(s)	492, 675, 723
BshNI	GGYRCC	3 cut(s)	270, 448, 737
BshTI	ACCGGT	1 cut(s)	575
BsiHKAI	GWGCWC	2 cut(s)	200, 549
BsiSI	CCGG	2 cut(s)	279, 576
BslFI	GGGAC	1 cut(s)	413
BslI	CCNNNNNNNGG	2 cut(s)	600, 682
BsmFI	GGGAC	1 cut(s)	413
BsnI	GGCC	3 cut(s)	492, 675, 723
Bsp1286I	GDGCHC	3 cut(s)	200, 549, 742
Bsp143I	GATC	1 cut(s)	516
BspACI	CCGC	2 cut(s)	676, 748
BspANI	GGCC	3 cut(s)	492, 675, 723
BspCNI	CTCAG	2 cut(s)	186, 376
BspLI	GGNNCC	5 cut(s)	272, 283, 450, 568, 739
BspMAI	CTGCAG	1 cut(s)	458
BspT107I	GGYRCC	3 cut(s)	270, 448, 737
BsrDI	GCAATG	2 cut(s)	45, 402
BsrFI	RCCGGY	1 cut(s)	575
BsrI	ACTGG	4 cut(s)	605, 617, 666, 742
BssAI	RCCGGY	1 cut(s)	575
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	1 cut(s)	516
BssSI	CACGAG	1 cut(s)	90
Bst2BI	CACGAG	1 cut(s)	90
Bst2UI	CCWGG	2 cut(s)	167, 509
Bst4CI	ACNGT	1 cut(s)	682
BstC8I	GCNNGC	2 cut(s)	57, 642
BstDEI	CTNAG	2 cut(s)	194, 363
BstEII	GGTNACC	1 cut(s)	43
BstF5I	GGATG	2 cut(s)	230, 353
BstHHI	GCGC	1 cut(s)	55
BstKTI	GATC	1 cut(s)	519
BstMBI	GATC	1 cut(s)	516
BstMWI	GCNNNNNNNGC	3 cut(s)	279, 613, 704
BstNI	CCWGG	2 cut(s)	167, 509
BstNSI	RCATGY	1 cut(s)	59
BstPI	GGTNACC	1 cut(s)	43
BstSCI	CCNGG	3 cut(s)	165, 277, 507
BstSFI	CTRYAG	2 cut(s)	160, 454
BstSLI	GKGCMC	2 cut(s)	549, 742
BstV1I	GCAGC	3 cut(s)	175, 468, 685
BstV2I	GAAGAC	1 cut(s)	23
BstXI	CCANNNNNNTGG	2 cut(s)	173, 711
BsuRI	GGCC	3 cut(s)	492, 675, 723
BtsCI	GGATG	2 cut(s)	230, 353
BtsI	GCAGTG	2 cut(s)	183, 198
BtsIMutI	CAGTG	5 cut(s)	183, 198, 673, 678, 739
Cac8I	GCNNGC	2 cut(s)	57, 642
CaiI	CAGNNNCTG	1 cut(s)	600
CfoI	GCGC	1 cut(s)	55
Cfr10I	RCCGGY	1 cut(s)	575
Cfr13I	GGNCC	2 cut(s)	567, 714
CsiI	ACCWGGT	1 cut(s)	507
Csp6I	GTAC	2 cut(s)	177, 449
CspAI	ACCGGT	1 cut(s)	575
CviAII	CATG	1 cut(s)	56
CviQI	GTAC	2 cut(s)	177, 449
DdeI	CTNAG	2 cut(s)	194, 363
DpnI	GATC	1 cut(s)	518
DpnII	GATC	1 cut(s)	516
EaeI	YGGCCR	3 cut(s)	490, 673, 721
Eco47I	GGWCC	2 cut(s)	567, 714
Eco57I	CTGAAG	1 cut(s)	715
Eco91I	GGTNACC	1 cut(s)	43
EcoO65I	GGTNACC	1 cut(s)	43
EcoRII	CCWGG	2 cut(s)	165, 507
FaeI	CATG	1 cut(s)	59
FaiI	YATR	7 cut(s)	57, 63, 105, 150, 174, 240, 628
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	1 cut(s)	55
FbaI	TGATCA	1 cut(s)	516
Fnu4HI	GCNGC	4 cut(s)	189, 457, 676, 699
FokI	GGATG	2 cut(s)	237, 360
Fsp4HI	GCNGC	4 cut(s)	189, 457, 676, 699
FspAI	RTGCGCAY	1 cut(s)	54
FspI	TGCGCA	1 cut(s)	54
GlaI	GCGC	1 cut(s)	54
GluI	GCNGC	4 cut(s)	189, 457, 676, 699
GsaI	CCCAGC	3 cut(s)	224, 345, 707
GsuI	CTGGAG	1 cut(s)	441
HaeIII	GGCC	3 cut(s)	492, 675, 723
HapII	CCGG	2 cut(s)	279, 576
HhaI	GCGC	1 cut(s)	55
Hin1II	CATG	1 cut(s)	59
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	1 cut(s)	477
HpaI	GTTAAC	1 cut(s)	85
HpaII	CCGG	2 cut(s)	279, 576
HphI	GGTGA	4 cut(s)	55, 125, 472, 551
Hpy166II	GTNNAC	2 cut(s)	85, 547
Hpy188I	TCNGA	3 cut(s)	195, 476, 633
Hpy188III	TCNNGA	3 cut(s)	123, 570, 594
Hpy8I	GTNNAC	2 cut(s)	85, 547
HpyAV	CCTTC	5 cut(s)	284, 438, 456, 661, 739
HpyCH4III	ACNGT	1 cut(s)	682
HpyCH4IV	ACGT	1 cut(s)	525
HpyCH4V	TGCA	4 cut(s)	38, 354, 456, 547
HpyF10VI	GCNNNNNNNGC	3 cut(s)	279, 613, 704
HpyF3I	CTNAG	2 cut(s)	194, 363
HpySE526I	ACGT	1 cut(s)	525
Hsp92II	CATG	1 cut(s)	59
HspAI	GCGC	1 cut(s)	53
KpnI	GGTACC	1 cut(s)	452
Ksp22I	TGATCA	1 cut(s)	516
KspAI	GTTAAC	1 cut(s)	85
Kzo9I	GATC	1 cut(s)	516
LmnI	GCTCC	1 cut(s)	287
Lsp1109I	GCAGC	3 cut(s)	175, 468, 685
LweI	GCATC	3 cut(s)	106, 376, 480
MabI	ACCWGGT	1 cut(s)	507
MaeII	ACGT	1 cut(s)	525
MaeIII	GTNAC	3 cut(s)	43, 292, 658
MalI	GATC	1 cut(s)	518
MboI	GATC	1 cut(s)	516
MboII	GAAGA	1 cut(s)	23
MhlI	GDGCHC	3 cut(s)	200, 549, 742
MlsI	TGGCCA	2 cut(s)	492, 723
MluCI	AATT	2 cut(s)	243, 304
MluNI	TGGCCA	2 cut(s)	492, 723
MnlI	CCTC	6 cut(s)	167, 324, 369, 372, 389, 461
Mox20I	TGGCCA	2 cut(s)	492, 723
MscI	TGGCCA	2 cut(s)	492, 723
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	2 cut(s)	60, 683
Msp20I	TGGCCA	2 cut(s)	492, 723
MspI	CCGG	2 cut(s)	279, 576
MspR9I	CCNGG	3 cut(s)	167, 279, 509
MvaI	CCWGG	2 cut(s)	167, 509
MwoI	GCNNNNNNNGC	3 cut(s)	279, 613, 704
NciI	CCSGG	1 cut(s)	279
NdeII	GATC	1 cut(s)	516
NlaIII	CATG	1 cut(s)	59
NlaIV	GGNNCC	5 cut(s)	272, 283, 450, 568, 739
NmuCI	GTSAC	3 cut(s)	43, 292, 658
NsbI	TGCGCA	1 cut(s)	54
NspI	RCATGY	1 cut(s)	59
OliI	CACNNNNGTG	1 cut(s)	683
PaeI	GCATGC	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	477
PflMI	CCANNNNNTGG	1 cut(s)	600
PinAI	ACCGGT	1 cut(s)	575
PkrI	GCNGC	4 cut(s)	190, 458, 677, 700
Psp1406I	AACGTT	1 cut(s)	525
Psp6I	CCWGG	2 cut(s)	165, 507
PspEI	GGTNACC	1 cut(s)	43
PspFI	CCCAGC	3 cut(s)	220, 341, 703
PspGI	CCWGG	2 cut(s)	165, 507
PspN4I	GGNNCC	5 cut(s)	272, 283, 450, 568, 739
PspPI	GGNCC	2 cut(s)	567, 714
PstI	CTGCAG	1 cut(s)	458
PstNI	CAGNNNCTG	1 cut(s)	600
RsaI	GTAC	2 cut(s)	178, 450
RsaNI	GTAC	2 cut(s)	177, 449
RseI	CAYNNNNRTG	2 cut(s)	60, 683
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	4 cut(s)	189, 457, 676, 699
Sau3AI	GATC	1 cut(s)	516
Sau96I	GGNCC	2 cut(s)	567, 714
ScrFI	CCNGG	3 cut(s)	167, 279, 509
SduI	GDGCHC	3 cut(s)	200, 549, 742
SexAI	ACCWGGT	1 cut(s)	507
SfaNI	GCATC	3 cut(s)	106, 376, 480
SfcI	CTRYAG	2 cut(s)	160, 454
SinI	GGWCC	2 cut(s)	567, 714
SmiMI	CAYNNNNRTG	2 cut(s)	60, 683
SphI	GCATGC	1 cut(s)	59
Sse9I	AATT	2 cut(s)	243, 304
SsiI	CCGC	2 cut(s)	676, 748
StyD4I	CCNGG	3 cut(s)	165, 277, 507
TaaI	ACNGT	1 cut(s)	682
TaiI	ACGT	1 cut(s)	528
TasI	AATT	2 cut(s)	243, 304
TauI	GCSGC	1 cut(s)	678
TfiI	GAWTC	1 cut(s)	477
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	5 cut(s)	190, 205, 673, 685, 739
TseFI	GTSAC	3 cut(s)	43, 292, 658
TseI	GCWGC	3 cut(s)	188, 456, 698
Tsp45I	GTSAC	3 cut(s)	43, 292, 658
TspDTI	ATGAA	1 cut(s)	255
TspRI	CASTG	5 cut(s)	190, 205, 673, 685, 739
Van91I	CCANNNNNTGG	1 cut(s)	600
VneI	GTGCAC	1 cut(s)	545
VpaK11BI	GGWCC	2 cut(s)	567, 714
XceI	RCATGY	1 cut(s)	59
XcmI	CCANNNNNNNNNTGG	1 cut(s)	731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.