Rh7BG044000

Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0003982
Physical Location & Seq
Reverse (-)
2769790 .. 2770122
333 bp
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UTR
Exon/CDS
Intron
Rh7BG044000.1

Sequence Viewer

Length: 333 bp
ATGTATTTGCTTATATGTGTACGTAGGGTACCTTGCCAAAAGAAGGGTGGGATCAGATTCACAATCAACGGTCACTCATACTTCAATCTGGTCCTAATCACAAACGTGGGTGGTGCTGGTGATGTTCAATCTGTTTCCATCAAAGGGTCAAGAACTGGTTGGCAACCCATGTCTAGGAACTGGGGTCAGAATTGGCAGAGCAACTCCAACCTCGACGGCCAAAGCCTCTCATTCAAGGTCACAACCAGTGATGGCCGCACTGTAGTCTCTAACAATGTTGTTCCGGCAGGCTGGTCTTTCGGCCAGACTTTCTCCGGCCTCCAATTCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

110

Amino Acids

12.04

Weight (kDa)

10.29

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Expansin_C PF01357 18 - 95 3.6e-35 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 28
AccB1I GGYRCC 1 cut(s) 28
AciI CCGC 1 cut(s) 256
AclWI GGATC 1 cut(s) 59
AcoI YGGCCR 3 cut(s) 217, 253, 301
AfaI GTAC 2 cut(s) 21, 30
AfiI CCNNNNNNNGG 3 cut(s) 43, 144, 174
AgsI TTSAA 3 cut(s) 85, 128, 235
AleI CACNNNNGTG 1 cut(s) 104
Alw26I GTCTC 1 cut(s) 271
AlwI GGATC 1 cut(s) 59
AoxI GGCC 4 cut(s) 217, 253, 301, 316
Asp718I GGTACC 1 cut(s) 28
AspS9I GGNCC 1 cut(s) 91
AsuHPI GGTGA 1 cut(s) 131
AvaII GGWCC 1 cut(s) 91
BanI GGYRCC 1 cut(s) 28
BccI CCATC 2 cut(s) 146, 245
BceAI ACGGC 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 271
BfaI CTAG 1 cut(s) 174
BfmI CTRYAG 1 cut(s) 261
BisI GCNGC 1 cut(s) 256
BlsI GCNGC 1 cut(s) 257
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 91
BmiI GGNNCC 1 cut(s) 30
BmrI ACTGGG 1 cut(s) 190
BmuI ACTGGG 1 cut(s) 190
BsaAI YACGTR 1 cut(s) 23
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 144, 174
Bse1I ACTGG 3 cut(s) 160, 185, 246
BseLI CCNNNNNNNGG 3 cut(s) 43, 144, 174
BseNI ACTGG 3 cut(s) 160, 185, 246
BshFI GGCC 4 cut(s) 219, 255, 303, 318
BshNI GGYRCC 1 cut(s) 28
BsiSI CCGG 2 cut(s) 284, 315
BslI CCNNNNNNNGG 3 cut(s) 43, 144, 174
BsmAI GTCTC 1 cut(s) 271
BsnI GGCC 4 cut(s) 219, 255, 303, 318
Bsp143I GATC 1 cut(s) 51
BspACI CCGC 1 cut(s) 256
BspANI GGCC 4 cut(s) 219, 255, 303, 318
BspLI GGNNCC 1 cut(s) 30
BspPI GGATC 1 cut(s) 59
BspT107I GGYRCC 1 cut(s) 28
BsrI ACTGG 3 cut(s) 160, 185, 246
BssMI GATC 1 cut(s) 51
Bst4CI ACNGT 2 cut(s) 71, 262
BstBAI YACGTR 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 289
BstKTI GATC 1 cut(s) 54
BstMAI GTCTC 1 cut(s) 271
BstMBI GATC 1 cut(s) 51
BstSFI CTRYAG 1 cut(s) 261
BstSNI TACGTA 1 cut(s) 23
BsuRI GGCC 4 cut(s) 219, 255, 303, 318
BtsIMutI CAGTG 2 cut(s) 253, 258
Cac8I GCNNGC 1 cut(s) 289
Cfr13I GGNCC 1 cut(s) 91
Csp6I GTAC 2 cut(s) 20, 29
CviAII CATG 1 cut(s) 169
CviJI RGCY 6 cut(s) 219, 225, 255, 291, 303, 318
CviKI_1 RGCY 6 cut(s) 219, 225, 255, 291, 303, 318
CviQI GTAC 2 cut(s) 20, 29
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
EaeI YGGCCR 3 cut(s) 217, 253, 301
Eco105I TACGTA 1 cut(s) 23
Eco47I GGWCC 1 cut(s) 91
FaeI CATG 1 cut(s) 172
FaiI YATR 4 cut(s) 14, 16, 79, 170
FatI CATG 1 cut(s) 168
Fnu4HI GCNGC 1 cut(s) 256
Fsp4HI GCNGC 1 cut(s) 256
FspBI CTAG 1 cut(s) 174
GluI GCNGC 1 cut(s) 256
HaeIII GGCC 4 cut(s) 219, 255, 303, 318
HapII CCGG 2 cut(s) 284, 315
Hin1II CATG 1 cut(s) 172
HinfI GANTC 1 cut(s) 57
HpaII CCGG 2 cut(s) 284, 315
HphI GGTGA 1 cut(s) 131
Hpy166II GTNNAC 1 cut(s) 20
Hpy188I TCNGA 2 cut(s) 56, 189
Hpy188III TCNNGA 1 cut(s) 150
Hpy8I GTNNAC 1 cut(s) 20
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 37
HpyCH4III ACNGT 2 cut(s) 71, 262
HpyCH4IV ACGT 2 cut(s) 22, 105
HpySE526I ACGT 2 cut(s) 22, 105
Hsp92II CATG 1 cut(s) 172
KpnI GGTACC 1 cut(s) 32
Kzo9I GATC 1 cut(s) 51
MaeI CTAG 1 cut(s) 174
MaeII ACGT 2 cut(s) 22, 105
MaeIII GTNAC 2 cut(s) 71, 238
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MluCI AATT 2 cut(s) 190, 323
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 3 cut(s) 221, 236, 329
MseI TTAA 1 cut(s) 331
MslI CAYNNNNRTG 1 cut(s) 104
MspI CCGG 2 cut(s) 284, 315
NdeII GATC 1 cut(s) 51
NlaIII CATG 1 cut(s) 172
NlaIV GGNNCC 1 cut(s) 30
NmuCI GTSAC 2 cut(s) 71, 238
OliI CACNNNNGTG 1 cut(s) 104
PfeI GAWTC 1 cut(s) 57
PkrI GCNGC 1 cut(s) 257
Ppu21I YACGTR 1 cut(s) 23
PspN4I GGNNCC 1 cut(s) 30
PspPI GGNCC 1 cut(s) 91
RsaI GTAC 2 cut(s) 21, 30
RsaNI GTAC 2 cut(s) 20, 29
RseI CAYNNNNRTG 1 cut(s) 104
SaqAI TTAA 1 cut(s) 331
SatI GCNGC 1 cut(s) 256
Sau3AI GATC 1 cut(s) 51
Sau96I GGNCC 1 cut(s) 91
SetI ASST 5 cut(s) 25, 34, 108, 213, 240
SfcI CTRYAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 104
SnaBI TACGTA 1 cut(s) 23
Sse9I AATT 2 cut(s) 190, 323
SsiI CCGC 1 cut(s) 256
SspMI CTAG 1 cut(s) 174
TaaI ACNGT 2 cut(s) 71, 262
TaiI ACGT 2 cut(s) 25, 108
TaqI TCGA 1 cut(s) 213
TasI AATT 2 cut(s) 190, 323
TauI GCSGC 1 cut(s) 258
TfiI GAWTC 1 cut(s) 57
Tru1I TTAA 1 cut(s) 331
Tru9I TTAA 1 cut(s) 331
TscAI CASTG 2 cut(s) 253, 265
TseFI GTSAC 2 cut(s) 71, 238
Tsp45I GTSAC 2 cut(s) 71, 238
TspRI CASTG 2 cut(s) 253, 265
VpaK11BI GGWCC 1 cut(s) 91
XcmI CCANNNNNNNNNTGG 1 cut(s) 44
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.