Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0003982

Physical Location & Seq

Genomic Coordinates Reverse (-)

21258548 .. 21260022

Gene Structure 1475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g17260.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGTATTTATCCCCCACCTCACCCCCTCCACTTCTCCTCACAACTCACAAACACAAAGCCTCTTTTGCTTCTTTCTCTTTTCTGACACTACCGAAAGTGGTGTTTCTGCTTCAAAAACAAGTACAAGGTTGCTGTGCAGGAAAAAACATGGCAATTCTTGGTTTTCTCTTGGTGGGTCTTCTTTCTTTGAGCTCTTTTGCTTGTGGATATGGAGGAGGTGACGGTGGTTGGGTTGATGCACATGCCACTTTCTATGGCGGAGGTGATGCGTCAGGAACAATGGGTGGGGCTTGTGGCTATGGAAATCTGTATAGCCAAGGGTATGGAACTAACACGGCAGCTCTGAGCACAGCACTGTTCAACAATGGTCTGAGCTGCGGGGCTTGTTTTGAGATAAGGTGTGTGAGTGACCCCAAATGGTGTCTTCCGGGTTCTATTATGGTCACGGCGACCAATTTCTGCCCGCCAAACAATGCCCTTCCGAACAATGCCGGCGGTTGGTGCAACCCACCGCAGCACCACTTCGATCTCGCCCAGCCCATCTTCCAGCAGATTGCTCAATACCGAGCTGGAATTGTGCCTGTGTCTTACAGAAGGGTGCCTTGCTTAAAGAAAGGAGGTATCAGATTCACAATCAACGGTCACTCATACTTTAATTTAGTGCTGATCACAAACGTTGGAGGTGCTGGTGATGTTCATGCAGTTTCCATCAAAGGGTCAAGAACTGGCTGGCAACCCATGTCAAGGAACTGGGGCCAAAACTGGCAGAGCAACTCTTTCCTCAACGGCCAGAGCCTCTCATTCAAGGTCACAACCAGCGACGGTCGATCGATCGTCTCCAACAACGTTGTTCCTGCCGGCTGGAACTTTGGCCAAACTTTCAGCGGCCTACAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

300

Amino Acids

31.77

Weight (kDa)

9.17

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003982)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31140 FvH4_5g14760 FvH4_5g14760
malus_domestica	MD06G1195100.v1.1 MD13G1070200.v1.1 MD14G1202100.v1.1 MD16G1070600.v1.1
prunus_persica	Prupe.1G276700_v2.0.a1 Prupe.5G195200_v2.0.a1
pyrus_communis	pycom06g17260 pycom13g06300 pycom14g16740 pycom16g06140
rosa_chinensis	RchiOBHm_Chr4g0439541 RchiOBHm_Chr7g0181621
rosa_laevigata	RLG00000005178 RLG00000006260
rosa_multiflora	Rmu_sc0000988.1_g000016 Rmu_sc0007276.1_g000013
rosa_roxburghii	Rroxscaffold_3G00271840 Rroxscaffold_5G00380460
rosa_rugosa	Rorug04G0319400 Rorug06G0442600 Rorug06G0442600
rosa_samantha	Rh4AG370600 Rh4BG382400 Rh4CG397000 Rh7AG045000 Rh7BG044000 Rh7BG044100 Rh7CG045700
rosa_wichuraiana	Rw4G031590 Rw7G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	598
AciI	CCGC	6 cut(s)	258, 378, 464, 495, 512, 885
AclI	AACGTT	2 cut(s)	675, 846
AcoI	YGGCCR	2 cut(s)	787, 871
AfaI	GTAC	1 cut(s)	123
AfiI	CCNNNNNNNGG	3 cut(s)	498, 714, 744
AgsI	TTSAA	3 cut(s)	113, 361, 805
AluBI	AGCT	4 cut(s)	192, 341, 375, 569
AluI	AGCT	4 cut(s)	192, 341, 375, 569
Alw21I	GWGCWC	2 cut(s)	194, 350
Alw26I	GTCTC	1 cut(s)	841
AoxI	GGCC	4 cut(s)	754, 787, 871, 886
ApeKI	GCWGC	3 cut(s)	338, 375, 514
AspS9I	GGNCC	1 cut(s)	754
AsuC2I	CCSGG	1 cut(s)	429
AsuHPI	GGTGA	4 cut(s)	12, 230, 275, 701
BalI	TGGCCA	1 cut(s)	873
BanI	GGYRCC	1 cut(s)	598
BanII	GRGCYC	1 cut(s)	194
BbsI	GAAGAC	2 cut(s)	170, 416
Bbv12I	GWGCWC	2 cut(s)	194, 350
BbvI	GCAGC	3 cut(s)	350, 362, 526
BccI	CCATC	2 cut(s)	548, 716
BceAI	ACGGC	3 cut(s)	351, 462, 802
BclI	TGATCA	1 cut(s)	666
BcnI	CCSGG	1 cut(s)	429
BcoDI	GTCTC	1 cut(s)	841
BfmI	CTRYAG	1 cut(s)	890
BisI	GCNGC	4 cut(s)	339, 376, 515, 886
BlsI	GCNGC	4 cut(s)	340, 377, 516, 887
Bme1390I	CCNGG	1 cut(s)	429
BmgT120I	GGNCC	1 cut(s)	754
BmiI	GGNNCC	2 cut(s)	600, 755
BmrFI	CCNGG	1 cut(s)	429
BmrI	ACTGGG	1 cut(s)	760
BmsI	GCATC	2 cut(s)	226, 256
BmuI	ACTGGG	1 cut(s)	760
BpiI	GAAGAC	2 cut(s)	170, 416
BpuMI	CCSGG	1 cut(s)	429
Bsa29I	ATCGAT	1 cut(s)	830
BsaJI	CCNNGG	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	3 cut(s)	498, 714, 744
Bse118I	RCCGGY	2 cut(s)	491, 857
Bse1I	ACTGG	3 cut(s)	730, 755, 767
BseCI	ATCGAT	1 cut(s)	830
BseDI	CCNNGG	1 cut(s)	316
BseLI	CCNNNNNNNGG	3 cut(s)	498, 714, 744
BseMII	CTCAG	2 cut(s)	335, 362
BseNI	ACTGG	3 cut(s)	730, 755, 767
BseRI	GAGGAG	2 cut(s)	26, 228
BseXI	GCAGC	3 cut(s)	350, 362, 526
BseYI	CCCAGC	1 cut(s)	534
BsgI	GTGCAG	1 cut(s)	156
Bsh1285I	CGRYCG	3 cut(s)	826, 830, 834
BshFI	GGCC	4 cut(s)	756, 789, 873, 888
BshNI	GGYRCC	1 cut(s)	598
BshVI	ATCGAT	1 cut(s)	830
BsiEI	CGRYCG	3 cut(s)	826, 830, 834
BsiHKAI	GWGCWC	2 cut(s)	194, 350
BsiSI	CCGG	3 cut(s)	428, 492, 858
BslI	CCNNNNNNNGG	3 cut(s)	498, 714, 744
BsmAI	GTCTC	1 cut(s)	841
BsmBI	CGTCTC	1 cut(s)	841
BsnI	GGCC	4 cut(s)	756, 789, 873, 888
Bsp1286I	GDGCHC	2 cut(s)	194, 350
Bsp143I	GATC	4 cut(s)	526, 666, 827, 831
BspACI	CCGC	6 cut(s)	258, 378, 464, 495, 512, 885
BspANI	GGCC	4 cut(s)	756, 789, 873, 888
BspCNI	CTCAG	2 cut(s)	336, 363
BspDI	ATCGAT	1 cut(s)	830
BspLI	GGNNCC	2 cut(s)	600, 755
BspT107I	GGYRCC	1 cut(s)	598
BsrFI	RCCGGY	2 cut(s)	491, 857
BsrI	ACTGG	3 cut(s)	730, 755, 767
BssAI	RCCGGY	2 cut(s)	491, 857
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	4 cut(s)	526, 666, 827, 831
BssT1I	CCWWGG	1 cut(s)	316
Bst4CI	ACNGT	5 cut(s)	224, 357, 641, 824, 894
BstC8I	GCNNGC	4 cut(s)	464, 493, 731, 859
BstDEI	CTNAG	2 cut(s)	344, 371
BstKTI	GATC	4 cut(s)	529, 669, 830, 834
BstMAI	GTCTC	1 cut(s)	841
BstMBI	GATC	4 cut(s)	526, 666, 827, 831
BstMCI	CGRYCG	3 cut(s)	826, 830, 834
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 501
BstNSI	RCATGY	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	427
BstSFI	CTRYAG	1 cut(s)	890
BstV1I	GCAGC	3 cut(s)	350, 362, 526
BstV2I	GAAGAC	2 cut(s)	170, 416
BstXI	CCANNNNNNTGG	1 cut(s)	323
Bsu15I	ATCGAT	1 cut(s)	830
BsuRI	GGCC	4 cut(s)	756, 789, 873, 888
BsuTUI	ATCGAT	1 cut(s)	830
BtsIMutI	CAGTG	1 cut(s)	353
Cac8I	GCNNGC	4 cut(s)	464, 493, 731, 859
Cfr10I	RCCGGY	2 cut(s)	491, 857
Cfr13I	GGNCC	1 cut(s)	754
ClaI	ATCGAT	1 cut(s)	830
CseI	GACGC	1 cut(s)	258
Csp6I	GTAC	1 cut(s)	122
CviAII	CATG	4 cut(s)	148, 242, 698, 739
CviQI	GTAC	1 cut(s)	122
DdeI	CTNAG	2 cut(s)	344, 371
DpnI	GATC	4 cut(s)	528, 668, 829, 833
DpnII	GATC	4 cut(s)	526, 666, 827, 831
EaeI	YGGCCR	2 cut(s)	787, 871
EciI	GGCGGA	1 cut(s)	273
Ecl136II	GAGCTC	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	316
Eco24I	GRGCYC	1 cut(s)	194
Eco53kI	GAGCTC	1 cut(s)	192
EcoICRI	GAGCTC	1 cut(s)	192
EcoT14I	CCWWGG	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	194
ErhI	CCWWGG	1 cut(s)	316
Esp3I	CGTCTC	1 cut(s)	841
FaeI	CATG	4 cut(s)	151, 245, 701, 742
FalI	AAGNNNNNCTT	2 cut(s)	586, 618
FatI	CATG	4 cut(s)	147, 241, 697, 738
FauI	CCCGC	2 cut(s)	371, 471
FbaI	TGATCA	1 cut(s)	666
Fnu4HI	GCNGC	4 cut(s)	339, 376, 515, 886
FriOI	GRGCYC	1 cut(s)	194
Fsp4HI	GCNGC	4 cut(s)	339, 376, 515, 886
GluI	GCNGC	4 cut(s)	339, 376, 515, 886
GsaI	CCCAGC	1 cut(s)	538
HaeIII	GGCC	4 cut(s)	756, 789, 873, 888
HapII	CCGG	3 cut(s)	428, 492, 858
HgaI	GACGC	1 cut(s)	258
Hin1II	CATG	4 cut(s)	151, 245, 701, 742
HinfI	GANTC	1 cut(s)	627
HpaII	CCGG	3 cut(s)	428, 492, 858
HphI	GGTGA	4 cut(s)	12, 230, 275, 701
Hpy188I	TCNGA	5 cut(s)	84, 345, 372, 483, 626
Hpy188III	TCNNGA	2 cut(s)	273, 720
Hpy99I	CGWCG	1 cut(s)	824
HpyAV	CCTTC	2 cut(s)	488, 588
HpyCH4III	ACNGT	5 cut(s)	224, 357, 641, 824, 894
HpyCH4IV	ACGT	2 cut(s)	675, 846
HpyCH4V	TGCA	4 cut(s)	137, 239, 504, 701
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 501
HpyF3I	CTNAG	2 cut(s)	344, 371
HpySE526I	ACGT	2 cut(s)	675, 846
Hsp92II	CATG	4 cut(s)	151, 245, 701, 742
KroI	GCCGGC	2 cut(s)	491, 857
KroNI	GCCGGC	2 cut(s)	493, 859
Ksp22I	TGATCA	1 cut(s)	666
Kzo9I	GATC	4 cut(s)	526, 666, 827, 831
Lsp1109I	GCAGC	3 cut(s)	350, 362, 526
LweI	GCATC	2 cut(s)	226, 256
MaeII	ACGT	2 cut(s)	675, 846
MaeIII	GTNAC	5 cut(s)	218, 407, 442, 641, 808
MalI	GATC	4 cut(s)	528, 668, 829, 833
MboI	GATC	4 cut(s)	526, 666, 827, 831
MboII	GAAGA	3 cut(s)	170, 416, 535
MhlI	GDGCHC	2 cut(s)	194, 350
MlsI	TGGCCA	1 cut(s)	873
MluCI	AATT	4 cut(s)	153, 454, 573, 655
MluNI	TGGCCA	1 cut(s)	873
MmeI	TCCRAC	2 cut(s)	658, 864
Mox20I	TGGCCA	1 cut(s)	873
MroNI	GCCGGC	2 cut(s)	491, 857
MscI	TGGCCA	1 cut(s)	873
MseI	TTAA	2 cut(s)	608, 654
Msp20I	TGGCCA	1 cut(s)	873
MspA1I	CMGCKG	1 cut(s)	885
MspI	CCGG	3 cut(s)	428, 492, 858
MspR9I	CCNGG	1 cut(s)	429
MwoI	GCNNNNNNNGC	2 cut(s)	65, 501
NaeI	GCCGGC	2 cut(s)	493, 859
NciI	CCSGG	1 cut(s)	429
NdeII	GATC	4 cut(s)	526, 666, 827, 831
NgoMIV	GCCGGC	2 cut(s)	491, 857
NlaIII	CATG	4 cut(s)	151, 245, 701, 742
NlaIV	GGNNCC	2 cut(s)	600, 755
NmuCI	GTSAC	5 cut(s)	218, 407, 442, 641, 808
NspI	RCATGY	1 cut(s)	245
PdiI	GCCGGC	2 cut(s)	493, 859
PfeI	GAWTC	1 cut(s)	627
PkrI	GCNGC	4 cut(s)	340, 377, 516, 887
Ple19I	CGATCG	2 cut(s)	830, 834
Psp124BI	GAGCTC	1 cut(s)	194
Psp1406I	AACGTT	2 cut(s)	675, 846
PspFI	CCCAGC	1 cut(s)	534
PspN4I	GGNNCC	2 cut(s)	600, 755
PspPI	GGNCC	1 cut(s)	754
PvuI	CGATCG	2 cut(s)	830, 834
RsaI	GTAC	1 cut(s)	123
RsaNI	GTAC	1 cut(s)	122
SacI	GAGCTC	1 cut(s)	194
SaqAI	TTAA	2 cut(s)	608, 654
SatI	GCNGC	4 cut(s)	339, 376, 515, 886
Sau3AI	GATC	4 cut(s)	526, 666, 827, 831
Sau96I	GGNCC	1 cut(s)	754
ScrFI	CCNGG	1 cut(s)	429
SduI	GDGCHC	2 cut(s)	194, 350
SfaNI	GCATC	2 cut(s)	226, 256
SfcI	CTRYAG	1 cut(s)	890
Sse9I	AATT	4 cut(s)	153, 454, 573, 655
SsiI	CCGC	6 cut(s)	258, 378, 464, 495, 512, 885
SstI	GAGCTC	1 cut(s)	194
StyD4I	CCNGG	1 cut(s)	427
StyI	CCWWGG	1 cut(s)	316
TaaI	ACNGT	5 cut(s)	224, 357, 641, 824, 894
TaiI	ACGT	2 cut(s)	678, 849
TaqI	TCGA	3 cut(s)	525, 826, 830
TasI	AATT	4 cut(s)	153, 454, 573, 655
TatI	WGTACW	1 cut(s)	121
TauI	GCSGC	1 cut(s)	888
TfiI	GAWTC	1 cut(s)	627
Tru1I	TTAA	2 cut(s)	608, 654
Tru9I	TTAA	2 cut(s)	608, 654
TscAI	CASTG	1 cut(s)	360
TseFI	GTSAC	5 cut(s)	218, 407, 442, 641, 808
TseI	GCWGC	3 cut(s)	338, 375, 514
Tsp45I	GTSAC	5 cut(s)	218, 407, 442, 641, 808
TspDTI	ATGAA	1 cut(s)	686
TspRI	CASTG	1 cut(s)	360
XceI	RCATGY	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.