Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003982

Physical Location & Seq

Genomic Coordinates Forward (+)

67831555 .. 67832849

Gene Structure 1295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG370600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGTCCCAACTGTTTTTTATAGAAAAAAAGAAAAAAGAAAATGTAGTCAGTGGGCATGGTTTCTAAACAGTCCTATAAGCCCCCTCCCAAATTTCTATATAACCCCCCAGCTCCCTCCCACATTCCTCACACCACTGCCTCACATTTTCTCTGCCCTTTATTCTCTTTGGAGTCTCATCATCCATCCTATAATGAAAATGGCTTCTGCTGTGTTTTTCTTGGTGGGTCTTCTTGCAATGGTGACATGTGCGCATGCTTATGGTGGTGGTGGTTGGGTTAACGCTCGTGCCACTTTCTATGGAGGTGGTGATGCTTCTGGAACAATGGGTGGTGCTTGTGGCTATGGAAACCTCTACAGCCAGGGGTATGGTACAAACACTGCTGCTCTGAGCACTGCTCTGTTCAACAATGGGCTGGGATGTGGGTCTTGCTATGAAATTAGGTGTGTGAATGACCCAAAATGGTGCCTTCCTGGCTCCATTGTGGTCACAGCCACTAATTTCTGCCCTCCAAACAATGCCCTACCTAACAATGCTGGGGGTTGGTGCAACCCTCCTCAGCATCACTTTGACCTCTCTCAACCTGTATTCCAGCACATTGCTCAATACAAAGCTGGAGTTGTCCCTGTTTCTTACAGAAGGGTACCCTGCAGCAGAAGGGGAGGCATCAGATTCACCATCAATGGCCACTCCTACTTCAACCTGGTTTTGATCACAAACGTTGGTGGTGCTGGTGATGTGCACTCTGTTTCAGTCAAAGGGTCCAGAACCGGTTGGCAACCAATGTCCAGAAACTGGGGGCAAAACTGGCAAAGCAACTCATATCTGAATGGGCAAGCCCTATCCTTCAAGGTCACAACCAGTGATGGCCGCACTGTGGTGTCCTACAATGCTGCCCCAGCTCGTTGGTCCTTTGGCCAGACCTTCAGTGGTGCCCAGTTCCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

315

Amino Acids

34.29

Weight (kDa)

9.63

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	97 - 219	1.6e-09	EXPB1-like domain 1
DPBB_1	PF03330	127 - 212	1.4e-23	Lytic transglycolase
Expansin_C	PF01357	223 - 300	1.5e-33	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003982)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31140 FvH4_5g14760 FvH4_5g14760
malus_domestica	MD06G1195100.v1.1 MD13G1070200.v1.1 MD14G1202100.v1.1 MD16G1070600.v1.1
prunus_persica	Prupe.1G276700_v2.0.a1 Prupe.5G195200_v2.0.a1
pyrus_communis	pycom06g17260 pycom13g06300 pycom14g16740 pycom16g06140
rosa_chinensis	RchiOBHm_Chr4g0439541 RchiOBHm_Chr7g0181621
rosa_laevigata	RLG00000005178 RLG00000006260
rosa_multiflora	Rmu_sc0000988.1_g000016 Rmu_sc0007276.1_g000013
rosa_roxburghii	Rroxscaffold_3G00271840 Rroxscaffold_5G00380460
rosa_rugosa	Rorug04G0319400 Rorug06G0442600 Rorug06G0442600
rosa_samantha	Rh4AG370600 Rh4BG382400 Rh4CG397000 Rh7AG045000 Rh7BG044000 Rh7BG044100 Rh7CG045700
rosa_wichuraiana	Rw4G031590 Rw7G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	252
Acc65I	GGTACC	1 cut(s)	643
AccB1I	GGYRCC	3 cut(s)	465, 643, 932
AccB7I	CCANNNNNTGG	1 cut(s)	795
AciI	CCGC	2 cut(s)	871, 943
AclI	AACGTT	1 cut(s)	720
AcoI	YGGCCR	3 cut(s)	685, 868, 916
AcsI	RAATTY	1 cut(s)	91
AcuI	CTGAAG	1 cut(s)	910
AfaI	GTAC	2 cut(s)	373, 645
AfiI	CCNNNNNNNGG	2 cut(s)	795, 877
AflIII	ACRYGT	1 cut(s)	245
AgeI	ACCGGT	1 cut(s)	770
AgsI	TTSAA	3 cut(s)	406, 700, 850
AjnI	CCWGG	3 cut(s)	360, 472, 702
AleI	CACNNNNGTG	1 cut(s)	878
AluBI	AGCT	3 cut(s)	112, 614, 902
AluI	AGCT	3 cut(s)	112, 614, 902
Alw21I	GWGCWC	2 cut(s)	395, 744
Alw26I	GTCTC	1 cut(s)	179
Alw44I	GTGCAC	1 cut(s)	740
AlwNI	CAGNNNCTG	1 cut(s)	795
AoxI	GGCC	3 cut(s)	685, 868, 916
ApaLI	GTGCAC	1 cut(s)	740
ApeKI	GCWGC	3 cut(s)	383, 651, 893
ApoI	RAATTY	1 cut(s)	91
AsiGI	ACCGGT	1 cut(s)	770
Asp718I	GGTACC	1 cut(s)	643
AspLEI	GCGC	1 cut(s)	253
AspS9I	GGNCC	3 cut(s)	4, 762, 909
AsuHPI	GGTGA	4 cut(s)	253, 320, 667, 746
AvaII	GGWCC	3 cut(s)	4, 762, 909
BaeGI	GKGCMC	2 cut(s)	744, 937
BalI	TGGCCA	2 cut(s)	687, 918
BanI	GGYRCC	3 cut(s)	465, 643, 932
BauI	CACGAG	1 cut(s)	285
BbsI	GAAGAC	1 cut(s)	221
Bbv12I	GWGCWC	2 cut(s)	395, 744
BbvCI	CCTCAGC	1 cut(s)	558
BbvI	GCAGC	3 cut(s)	370, 663, 880
BccI	CCATC	3 cut(s)	192, 686, 860
BciT130I	CCWGG	3 cut(s)	362, 474, 704
BclI	TGATCA	1 cut(s)	711
BcoDI	GTCTC	1 cut(s)	179
BfmI	CTRYAG	2 cut(s)	355, 649
BglI	GCCNNNNNGGC	1 cut(s)	474
BisI	GCNGC	4 cut(s)	384, 652, 871, 894
BlsI	GCNGC	4 cut(s)	385, 653, 872, 895
Bme1390I	CCNGG	3 cut(s)	362, 474, 704
Bme18I	GGWCC	3 cut(s)	4, 762, 909
BmgT120I	GGNCC	3 cut(s)	4, 762, 909
BmiI	GGNNCC	6 cut(s)	6, 467, 478, 645, 763, 934
BmrFI	CCNGG	3 cut(s)	362, 474, 704
BmrI	ACTGGG	2 cut(s)	805, 931
BmsI	GCATC	3 cut(s)	301, 571, 675
BmuI	ACTGGG	2 cut(s)	805, 931
BpiI	GAAGAC	1 cut(s)	221
BplI	GAGNNNNNCTC	2 cut(s)	382, 414
BpmI	CTGGAG	1 cut(s)	636
Bpu10I	CCTNAGC	1 cut(s)	558
BsaJI	CCNNGG	1 cut(s)	361
BsaWI	WCCGGW	1 cut(s)	770
Bsc4I	CCNNNNNNNGG	2 cut(s)	795, 877
Bse118I	RCCGGY	1 cut(s)	770
Bse1I	ACTGG	4 cut(s)	800, 812, 861, 937
Bse3DI	GCAATG	2 cut(s)	243, 597
BseBI	CCWGG	3 cut(s)	362, 474, 704
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	3 cut(s)	180, 184, 425
BseLI	CCNNNNNNNGG	2 cut(s)	795, 877
BseMI	GCAATG	2 cut(s)	243, 597
BseMII	CTCAG	2 cut(s)	380, 572
BseNI	ACTGG	4 cut(s)	800, 812, 861, 937
BseRI	GAGGAG	1 cut(s)	546
BseSI	GKGCMC	2 cut(s)	744, 937
BseXI	GCAGC	3 cut(s)	370, 663, 880
BseYI	CCCAGC	4 cut(s)	108, 415, 536, 898
BshFI	GGCC	3 cut(s)	687, 870, 918
BshNI	GGYRCC	3 cut(s)	465, 643, 932
BshTI	ACCGGT	1 cut(s)	770
BsiHKAI	GWGCWC	2 cut(s)	395, 744
BsiSI	CCGG	1 cut(s)	771
BslFI	GGGAC	1 cut(s)	608
BslI	CCNNNNNNNGG	2 cut(s)	795, 877
BsmAI	GTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	608
BsnI	GGCC	3 cut(s)	687, 870, 918
Bsp1286I	GDGCHC	3 cut(s)	395, 744, 937
Bsp143I	GATC	1 cut(s)	711
BspACI	CCGC	2 cut(s)	871, 943
BspANI	GGCC	3 cut(s)	687, 870, 918
BspCNI	CTCAG	2 cut(s)	381, 571
BspLI	GGNNCC	6 cut(s)	6, 467, 478, 645, 763, 934
BspMAI	CTGCAG	1 cut(s)	653
BspT107I	GGYRCC	3 cut(s)	465, 643, 932
BsrDI	GCAATG	2 cut(s)	243, 597
BsrFI	RCCGGY	1 cut(s)	770
BsrI	ACTGG	4 cut(s)	800, 812, 861, 937
BssAI	RCCGGY	1 cut(s)	770
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	1 cut(s)	711
BssSI	CACGAG	1 cut(s)	285
Bst2BI	CACGAG	1 cut(s)	285
Bst2UI	CCWGG	3 cut(s)	362, 474, 704
Bst4CI	ACNGT	3 cut(s)	13, 71, 877
BstC8I	GCNNGC	2 cut(s)	255, 837
BstDEI	CTNAG	2 cut(s)	389, 558
BstF5I	GGATG	3 cut(s)	180, 184, 425
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	1 cut(s)	714
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	1 cut(s)	711
BstMWI	GCNNNNNNNGC	3 cut(s)	474, 808, 899
BstNI	CCWGG	3 cut(s)	362, 474, 704
BstNSI	RCATGY	2 cut(s)	249, 257
BstSCI	CCNGG	3 cut(s)	360, 472, 702
BstSFI	CTRYAG	2 cut(s)	355, 649
BstSLI	GKGCMC	2 cut(s)	744, 937
BstV1I	GCAGC	3 cut(s)	370, 663, 880
BstV2I	GAAGAC	1 cut(s)	221
BstXI	CCANNNNNNTGG	2 cut(s)	368, 906
BsuRI	GGCC	3 cut(s)	687, 870, 918
BtsCI	GGATG	3 cut(s)	180, 184, 425
BtsI	GCAGTG	3 cut(s)	134, 378, 393
BtsIMutI	CAGTG	7 cut(s)	56, 134, 378, 393, 868, 873, 934
Cac8I	GCNNGC	2 cut(s)	255, 837
CaiI	CAGNNNCTG	1 cut(s)	795
CfoI	GCGC	1 cut(s)	253
Cfr10I	RCCGGY	1 cut(s)	770
Cfr13I	GGNCC	3 cut(s)	4, 762, 909
CsiI	ACCWGGT	1 cut(s)	702
Csp6I	GTAC	2 cut(s)	372, 644
CspAI	ACCGGT	1 cut(s)	770
CviAII	CATG	3 cut(s)	57, 246, 254
CviQI	GTAC	2 cut(s)	372, 644
DdeI	CTNAG	2 cut(s)	389, 558
DpnI	GATC	1 cut(s)	713
DpnII	GATC	1 cut(s)	711
EaeI	YGGCCR	3 cut(s)	685, 868, 916
Eco47I	GGWCC	3 cut(s)	4, 762, 909
Eco57I	CTGAAG	1 cut(s)	910
EcoRII	CCWGG	3 cut(s)	360, 472, 702
FaeI	CATG	3 cut(s)	60, 249, 257
FaqI	GGGAC	1 cut(s)	608
FatI	CATG	3 cut(s)	56, 245, 253
FbaI	TGATCA	1 cut(s)	711
Fnu4HI	GCNGC	4 cut(s)	384, 652, 871, 894
FokI	GGATG	3 cut(s)	167, 171, 432
Fsp4HI	GCNGC	4 cut(s)	384, 652, 871, 894
FspAI	RTGCGCAY	1 cut(s)	252
FspI	TGCGCA	1 cut(s)	252
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	4 cut(s)	384, 652, 871, 894
GsaI	CCCAGC	4 cut(s)	112, 419, 540, 902
GsuI	CTGGAG	1 cut(s)	636
HaeIII	GGCC	3 cut(s)	687, 870, 918
HapII	CCGG	1 cut(s)	771
HhaI	GCGC	1 cut(s)	253
Hin1II	CATG	3 cut(s)	60, 249, 257
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	2 cut(s)	172, 672
HpaI	GTTAAC	1 cut(s)	280
HpaII	CCGG	1 cut(s)	771
HphI	GGTGA	4 cut(s)	253, 320, 667, 746
Hpy166II	GTNNAC	2 cut(s)	280, 742
Hpy188I	TCNGA	3 cut(s)	390, 671, 828
Hpy188III	TCNNGA	3 cut(s)	318, 765, 789
Hpy8I	GTNNAC	2 cut(s)	280, 742
HpyAV	CCTTC	5 cut(s)	479, 633, 651, 856, 934
HpyCH4III	ACNGT	3 cut(s)	13, 71, 877
HpyCH4IV	ACGT	1 cut(s)	720
HpyCH4V	TGCA	4 cut(s)	236, 549, 651, 742
HpyF10VI	GCNNNNNNNGC	3 cut(s)	474, 808, 899
HpyF3I	CTNAG	2 cut(s)	389, 558
HpySE526I	ACGT	1 cut(s)	720
Hsp92II	CATG	3 cut(s)	60, 249, 257
HspAI	GCGC	1 cut(s)	251
KpnI	GGTACC	1 cut(s)	647
Ksp22I	TGATCA	1 cut(s)	711
KspAI	GTTAAC	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	711
LmnI	GCTCC	2 cut(s)	117, 482
Lsp1109I	GCAGC	3 cut(s)	370, 663, 880
LweI	GCATC	3 cut(s)	301, 571, 675
MabI	ACCWGGT	1 cut(s)	702
MaeII	ACGT	1 cut(s)	720
MaeIII	GTNAC	3 cut(s)	241, 487, 853
MalI	GATC	1 cut(s)	713
MboI	GATC	1 cut(s)	711
MboII	GAAGA	1 cut(s)	221
MhlI	GDGCHC	3 cut(s)	395, 744, 937
MlsI	TGGCCA	2 cut(s)	687, 918
MluCI	AATT	3 cut(s)	91, 438, 499
MluNI	TGGCCA	2 cut(s)	687, 918
MlyI	GAGTC	1 cut(s)	181
Mox20I	TGGCCA	2 cut(s)	687, 918
MscI	TGGCCA	2 cut(s)	687, 918
MseI	TTAA	1 cut(s)	279
MslI	CAYNNNNRTG	2 cut(s)	258, 878
Msp20I	TGGCCA	2 cut(s)	687, 918
MspI	CCGG	1 cut(s)	771
MspR9I	CCNGG	3 cut(s)	362, 474, 704
MvaI	CCWGG	3 cut(s)	362, 474, 704
MwoI	GCNNNNNNNGC	3 cut(s)	474, 808, 899
NdeII	GATC	1 cut(s)	711
NlaIII	CATG	3 cut(s)	60, 249, 257
NlaIV	GGNNCC	6 cut(s)	6, 467, 478, 645, 763, 934
NmuCI	GTSAC	3 cut(s)	241, 487, 853
NsbI	TGCGCA	1 cut(s)	252
NspI	RCATGY	2 cut(s)	249, 257
OliI	CACNNNNGTG	1 cut(s)	878
PaeI	GCATGC	1 cut(s)	257
PciI	ACATGT	1 cut(s)	245
PfeI	GAWTC	1 cut(s)	672
PflMI	CCANNNNNTGG	1 cut(s)	795
PinAI	ACCGGT	1 cut(s)	770
PkrI	GCNGC	4 cut(s)	385, 653, 872, 895
PleI	GAGTC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	180
PscI	ACATGT	1 cut(s)	245
Psp1406I	AACGTT	1 cut(s)	720
Psp6I	CCWGG	3 cut(s)	360, 472, 702
PspFI	CCCAGC	4 cut(s)	108, 415, 536, 898
PspGI	CCWGG	3 cut(s)	360, 472, 702
PspN4I	GGNNCC	6 cut(s)	6, 467, 478, 645, 763, 934
PspPI	GGNCC	3 cut(s)	4, 762, 909
PstI	CTGCAG	1 cut(s)	653
PstNI	CAGNNNCTG	1 cut(s)	795
RsaI	GTAC	2 cut(s)	373, 645
RsaNI	GTAC	2 cut(s)	372, 644
RseI	CAYNNNNRTG	2 cut(s)	258, 878
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	4 cut(s)	384, 652, 871, 894
Sau3AI	GATC	1 cut(s)	711
Sau96I	GGNCC	3 cut(s)	4, 762, 909
SchI	GAGTC	1 cut(s)	181
ScrFI	CCNGG	3 cut(s)	362, 474, 704
SduI	GDGCHC	3 cut(s)	395, 744, 937
SexAI	ACCWGGT	1 cut(s)	702
SfaNI	GCATC	3 cut(s)	301, 571, 675
SfcI	CTRYAG	2 cut(s)	355, 649
SinI	GGWCC	3 cut(s)	4, 762, 909
SmiMI	CAYNNNNRTG	2 cut(s)	258, 878
SphI	GCATGC	1 cut(s)	257
Sse9I	AATT	3 cut(s)	91, 438, 499
SsiI	CCGC	2 cut(s)	871, 943
StyD4I	CCNGG	3 cut(s)	360, 472, 702
TaaI	ACNGT	3 cut(s)	13, 71, 877
TaiI	ACGT	1 cut(s)	723
TasI	AATT	3 cut(s)	91, 438, 499
TauI	GCSGC	1 cut(s)	873
TfiI	GAWTC	1 cut(s)	672
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TscAI	CASTG	7 cut(s)	56, 141, 385, 400, 868, 880, 934
TseFI	GTSAC	3 cut(s)	241, 487, 853
TseI	GCWGC	3 cut(s)	383, 651, 893
Tsp45I	GTSAC	3 cut(s)	241, 487, 853
TspDTI	ATGAA	2 cut(s)	209, 450
TspRI	CASTG	7 cut(s)	56, 141, 385, 400, 868, 880, 934
Van91I	CCANNNNNTGG	1 cut(s)	795
VneI	GTGCAC	1 cut(s)	740
VpaK11BI	GGWCC	3 cut(s)	4, 762, 909
XapI	RAATTY	1 cut(s)	91
XceI	RCATGY	2 cut(s)	249, 257
XcmI	CCANNNNNNNNNTGG	1 cut(s)	926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.