Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003982

Physical Location & Seq

Genomic Coordinates Reverse (-)

28184037 .. 28186173

Gene Structure 2137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G276700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAAAATGGCTCTTGCTTATGGGTTTTGTTTGGTGGGTCTTCTTGCAATGGTCTCCTGTGCGCATGCTTATGGTGGAGGTGGATGGGTTAACGCTCGTGCCACTTTCTATGGAGGCGGTGATGCTTCCGGGACAATGGGTGGTGCTTGTGGGTATGGAAACCTCTACAGTCAGGGGTACGGGACAAATACTGCAGCACTGAGCACTGCTCTGTTCAACAATGGCTTGGGCTGTGGTTCTTGCTATGAGATTAGGTGTGTAAGTGACCCCAAATGGTGCTTGCCTGGCGCCATTGTGGTCACAGCCACCAATTTCTGCCCACCAAACAATGCCCTTCCTAACAATGCTGGGGGCTGGTGCAATCCTCCTCAGCACCACTTTGACCTCTCTCAGCCTGTCTTCCAGCACATTGCTCAGTACAAAGCTGGTGTTGTGCCTGTTGCTTACAGAAGGGTACCTTGCAGGAGAAGGGGAGGTATCAGATTCACCATCAATGGGCACTCCTACTTCAACCTGGTCCTCATCACAAACGTTGGTGGTGCCGGTGATGTGCACTCTGTTTCAGTCAAAGGGTCCAGGACTGGTTGGCAAGCAATGTCCAGAAATTGGGGCCAGAACTGGCAAAGCAACTCCTACCTCAATGGCCAAAGCCTCTCTTTCAAGGTCACTACCAGTGATGGCCGCACAGTGGTGTCCTACAATGCTGCCCCAGCAGGGTGGTCCTTTGGGCAGACCTACAGTGGTGCCCAATTCCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

253

Amino Acids

26.74

Weight (kDa)

9.33

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003982)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31140 FvH4_5g14760 FvH4_5g14760
malus_domestica	MD06G1195100.v1.1 MD13G1070200.v1.1 MD14G1202100.v1.1 MD16G1070600.v1.1
prunus_persica	Prupe.1G276700_v2.0.a1 Prupe.5G195200_v2.0.a1
pyrus_communis	pycom06g17260 pycom13g06300 pycom14g16740 pycom16g06140
rosa_chinensis	RchiOBHm_Chr4g0439541 RchiOBHm_Chr7g0181621
rosa_laevigata	RLG00000005178 RLG00000006260
rosa_multiflora	Rmu_sc0000988.1_g000016 Rmu_sc0007276.1_g000013
rosa_roxburghii	Rroxscaffold_3G00271840 Rroxscaffold_5G00380460
rosa_rugosa	Rorug04G0319400 Rorug06G0442600 Rorug06G0442600
rosa_samantha	Rh4AG370600 Rh4BG382400 Rh4CG397000 Rh7AG045000 Rh7BG044000 Rh7BG044100 Rh7CG045700
rosa_wichuraiana	Rw4G031590 Rw7G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	63
Acc65I	GGTACC	1 cut(s)	454
AccB1I	GGYRCC	4 cut(s)	287, 454, 539, 743
AccB7I	CCANNNNNTGG	1 cut(s)	606
AciI	CCGC	3 cut(s)	117, 682, 754
AclI	AACGTT	1 cut(s)	531
AcoI	YGGCCR	2 cut(s)	643, 679
AcyI	GRCGYC	1 cut(s)	288
AfaI	GTAC	3 cut(s)	179, 419, 456
AfiI	CCNNNNNNNGG	4 cut(s)	495, 606, 688, 714
AgsI	TTSAA	3 cut(s)	217, 511, 661
AjnI	CCWGG	3 cut(s)	283, 513, 575
AleI	CACNNNNGTG	1 cut(s)	689
AluBI	AGCT	1 cut(s)	425
AluI	AGCT	1 cut(s)	425
Alw21I	GWGCWC	2 cut(s)	206, 555
Alw26I	GTCTC	1 cut(s)	58
Alw44I	GTGCAC	1 cut(s)	551
AoxI	GGCC	3 cut(s)	610, 643, 679
ApaLI	GTGCAC	1 cut(s)	551
ApeKI	GCWGC	2 cut(s)	194, 704
Asp718I	GGTACC	1 cut(s)	454
AspLEI	GCGC	2 cut(s)	64, 290
AspS9I	GGNCC	4 cut(s)	517, 573, 610, 720
AsuC2I	CCSGG	1 cut(s)	130
AsuHPI	GGTGA	3 cut(s)	131, 478, 557
AvaII	GGWCC	3 cut(s)	517, 573, 720
BaeGI	GKGCMC	3 cut(s)	501, 555, 748
BalI	TGGCCA	1 cut(s)	645
BanI	GGYRCC	4 cut(s)	287, 454, 539, 743
BauI	CACGAG	1 cut(s)	96
BbsI	GAAGAC	2 cut(s)	32, 391
Bbv12I	GWGCWC	2 cut(s)	206, 555
BbvCI	CCTCAGC	1 cut(s)	369
BbvI	GCAGC	2 cut(s)	206, 691
BccI	CCATC	3 cut(s)	78, 497, 671
BciT130I	CCWGG	3 cut(s)	285, 515, 577
BcnI	CCSGG	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	58
BfaI	CTAG	1 cut(s)	757
BfmI	CTRYAG	3 cut(s)	166, 192, 736
BfoI	RGCGCY	1 cut(s)	291
BisI	GCNGC	3 cut(s)	195, 682, 705
BlsI	GCNGC	3 cut(s)	196, 683, 706
Bme1390I	CCNGG	4 cut(s)	130, 285, 515, 577
Bme18I	GGWCC	3 cut(s)	517, 573, 720
BmgT120I	GGNCC	4 cut(s)	517, 573, 610, 720
BmiI	GGNNCC	6 cut(s)	289, 456, 541, 574, 611, 745
BmrFI	CCNGG	4 cut(s)	130, 285, 515, 577
BmsI	GCATC	1 cut(s)	112
BpiI	GAAGAC	2 cut(s)	32, 391
BplI	GAGNNNNNCTC	2 cut(s)	193, 225
Bpu10I	CCTNAGC	1 cut(s)	369
BpuMI	CCSGG	1 cut(s)	130
BsaHI	GRCGYC	1 cut(s)	288
BsaI	GGTCTC	1 cut(s)	58
Bsc4I	CCNNNNNNNGG	4 cut(s)	495, 606, 688, 714
Bse118I	RCCGGY	1 cut(s)	542
Bse1I	ACTGG	3 cut(s)	586, 623, 672
Bse3DI	GCAATG	3 cut(s)	54, 408, 600
BseBI	CCWGG	3 cut(s)	285, 515, 577
BseGI	GGATG	1 cut(s)	89
BseLI	CCNNNNNNNGG	4 cut(s)	495, 606, 688, 714
BseMI	GCAATG	3 cut(s)	54, 408, 600
BseMII	CTCAG	4 cut(s)	191, 383, 404, 428
BseNI	ACTGG	3 cut(s)	586, 623, 672
BseRI	GAGGAG	1 cut(s)	357
BseSI	GKGCMC	3 cut(s)	501, 555, 748
BseXI	GCAGC	2 cut(s)	206, 691
BseYI	CCCAGC	2 cut(s)	347, 709
BshFI	GGCC	3 cut(s)	612, 645, 681
BshNI	GGYRCC	4 cut(s)	287, 454, 539, 743
BsiHKAI	GWGCWC	2 cut(s)	206, 555
BsiSI	CCGG	2 cut(s)	129, 543
BslFI	GGGAC	2 cut(s)	145, 196
BslI	CCNNNNNNNGG	4 cut(s)	495, 606, 688, 714
BsmAI	GTCTC	1 cut(s)	58
BsmFI	GGGAC	2 cut(s)	145, 196
BsnI	GGCC	3 cut(s)	612, 645, 681
Bso31I	GGTCTC	1 cut(s)	58
Bsp1286I	GDGCHC	4 cut(s)	206, 501, 555, 748
BspACI	CCGC	3 cut(s)	117, 682, 754
BspANI	GGCC	3 cut(s)	612, 645, 681
BspCNI	CTCAG	4 cut(s)	192, 382, 403, 427
BspLI	GGNNCC	6 cut(s)	289, 456, 541, 574, 611, 745
BspMAI	CTGCAG	1 cut(s)	196
BspT107I	GGYRCC	4 cut(s)	287, 454, 539, 743
BspTNI	GGTCTC	1 cut(s)	58
BsrDI	GCAATG	3 cut(s)	54, 408, 600
BsrFI	RCCGGY	1 cut(s)	542
BsrI	ACTGG	3 cut(s)	586, 623, 672
BssAI	RCCGGY	1 cut(s)	542
BssNI	GRCGYC	1 cut(s)	288
BssSI	CACGAG	1 cut(s)	96
Bst2BI	CACGAG	1 cut(s)	96
Bst2UI	CCWGG	3 cut(s)	285, 515, 577
Bst4CI	ACNGT	3 cut(s)	170, 688, 740
BstACI	GRCGYC	1 cut(s)	288
BstC8I	GCNNGC	3 cut(s)	66, 281, 591
BstDEI	CTNAG	4 cut(s)	200, 369, 390, 414
BstF5I	GGATG	1 cut(s)	89
BstH2I	RGCGCY	1 cut(s)	291
BstHHI	GCGC	2 cut(s)	64, 290
BstMAI	GTCTC	1 cut(s)	58
BstMWI	GCNNNNNNNGC	2 cut(s)	285, 710
BstNI	CCWGG	3 cut(s)	285, 515, 577
BstNSI	RCATGY	1 cut(s)	68
BstSCI	CCNGG	4 cut(s)	128, 283, 513, 575
BstSFI	CTRYAG	3 cut(s)	166, 192, 736
BstSLI	GKGCMC	3 cut(s)	501, 555, 748
BstV1I	GCAGC	2 cut(s)	206, 691
BstV2I	GAAGAC	2 cut(s)	32, 391
BstXI	CCANNNNNNTGG	1 cut(s)	717
BsuRI	GGCC	3 cut(s)	612, 645, 681
BtsCI	GGATG	1 cut(s)	89
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	5 cut(s)	197, 204, 679, 693, 745
Cac8I	GCNNGC	3 cut(s)	66, 281, 591
CfoI	GCGC	2 cut(s)	64, 290
Cfr10I	RCCGGY	1 cut(s)	542
Cfr13I	GGNCC	4 cut(s)	517, 573, 610, 720
CsiI	ACCWGGT	1 cut(s)	513
Csp6I	GTAC	3 cut(s)	178, 418, 455
CviAII	CATG	1 cut(s)	65
CviQI	GTAC	3 cut(s)	178, 418, 455
DdeI	CTNAG	4 cut(s)	200, 369, 390, 414
DinI	GGCGCC	1 cut(s)	289
EaeI	YGGCCR	2 cut(s)	643, 679
Eco31I	GGTCTC	1 cut(s)	58
Eco47I	GGWCC	3 cut(s)	517, 573, 720
EcoRII	CCWGG	3 cut(s)	283, 513, 575
EgeI	GGCGCC	1 cut(s)	289
EheI	GGCGCC	1 cut(s)	289
FaeI	CATG	1 cut(s)	68
FaiI	YATR	6 cut(s)	21, 66, 72, 111, 156, 246
FalI	AAGNNNNNCTT	4 cut(s)	442, 474, 640, 672
FaqI	GGGAC	2 cut(s)	145, 196
FatI	CATG	1 cut(s)	64
Fnu4HI	GCNGC	3 cut(s)	195, 682, 705
FokI	GGATG	1 cut(s)	96
Fsp4HI	GCNGC	3 cut(s)	195, 682, 705
FspAI	RTGCGCAY	1 cut(s)	63
FspBI	CTAG	1 cut(s)	757
FspI	TGCGCA	1 cut(s)	63
GlaI	GCGC	2 cut(s)	63, 289
GluI	GCNGC	3 cut(s)	195, 682, 705
GsaI	CCCAGC	2 cut(s)	351, 713
HaeII	RGCGCY	1 cut(s)	291
HaeIII	GGCC	3 cut(s)	612, 645, 681
HapII	CCGG	2 cut(s)	129, 543
HhaI	GCGC	2 cut(s)	64, 290
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	1 cut(s)	68
Hin6I	GCGC	2 cut(s)	62, 288
HinP1I	GCGC	2 cut(s)	62, 288
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	1 cut(s)	483
HpaI	GTTAAC	1 cut(s)	91
HpaII	CCGG	2 cut(s)	129, 543
HphI	GGTGA	3 cut(s)	131, 478, 557
Hpy166II	GTNNAC	2 cut(s)	91, 553
Hpy188I	TCNGA	1 cut(s)	482
Hpy188III	TCNNGA	1 cut(s)	600
Hpy8I	GTNNAC	2 cut(s)	91, 553
HpyAV	CCTTC	3 cut(s)	344, 444, 462
HpyCH4III	ACNGT	3 cut(s)	170, 688, 740
HpyCH4IV	ACGT	1 cut(s)	531
HpyCH4V	TGCA	5 cut(s)	47, 194, 360, 462, 553
HpyF10VI	GCNNNNNNNGC	2 cut(s)	285, 710
HpyF3I	CTNAG	4 cut(s)	200, 369, 390, 414
HpySE526I	ACGT	1 cut(s)	531
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	1 cut(s)	68
HspAI	GCGC	2 cut(s)	62, 288
KasI	GGCGCC	1 cut(s)	287
KpnI	GGTACC	1 cut(s)	458
KspAI	GTTAAC	1 cut(s)	91
Lsp1109I	GCAGC	2 cut(s)	206, 691
LweI	GCATC	1 cut(s)	112
MabI	ACCWGGT	1 cut(s)	513
MaeI	CTAG	1 cut(s)	757
MaeII	ACGT	1 cut(s)	531
MaeIII	GTNAC	3 cut(s)	263, 298, 664
MboII	GAAGA	2 cut(s)	32, 391
MhlI	GDGCHC	4 cut(s)	206, 501, 555, 748
MlsI	TGGCCA	1 cut(s)	645
MluCI	AATT	3 cut(s)	310, 604, 749
MluNI	TGGCCA	1 cut(s)	645
Mly113I	GGCGCC	1 cut(s)	288
Mox20I	TGGCCA	1 cut(s)	645
MscI	TGGCCA	1 cut(s)	645
MseI	TTAA	1 cut(s)	90
MslI	CAYNNNNRTG	2 cut(s)	69, 689
Msp20I	TGGCCA	1 cut(s)	645
MspI	CCGG	2 cut(s)	129, 543
MspR9I	CCNGG	4 cut(s)	130, 285, 515, 577
MvaI	CCWGG	3 cut(s)	285, 515, 577
MwoI	GCNNNNNNNGC	2 cut(s)	285, 710
NarI	GGCGCC	1 cut(s)	288
NciI	CCSGG	1 cut(s)	130
NlaIII	CATG	1 cut(s)	68
NlaIV	GGNNCC	6 cut(s)	289, 456, 541, 574, 611, 745
NmuCI	GTSAC	3 cut(s)	263, 298, 664
NsbI	TGCGCA	1 cut(s)	63
NspI	RCATGY	1 cut(s)	68
OliI	CACNNNNGTG	1 cut(s)	689
PaeI	GCATGC	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	483
PflMI	CCANNNNNTGG	1 cut(s)	606
PfoI	TCCNGGA	2 cut(s)	128, 575
PkrI	GCNGC	3 cut(s)	196, 683, 706
PluTI	GGCGCC	1 cut(s)	291
Psp1406I	AACGTT	1 cut(s)	531
Psp6I	CCWGG	3 cut(s)	283, 513, 575
PspFI	CCCAGC	2 cut(s)	347, 709
PspGI	CCWGG	3 cut(s)	283, 513, 575
PspN4I	GGNNCC	6 cut(s)	289, 456, 541, 574, 611, 745
PspPI	GGNCC	4 cut(s)	517, 573, 610, 720
PstI	CTGCAG	1 cut(s)	196
RsaI	GTAC	3 cut(s)	179, 419, 456
RsaNI	GTAC	3 cut(s)	178, 418, 455
RseI	CAYNNNNRTG	2 cut(s)	69, 689
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	3 cut(s)	195, 682, 705
Sau96I	GGNCC	4 cut(s)	517, 573, 610, 720
ScrFI	CCNGG	4 cut(s)	130, 285, 515, 577
SduI	GDGCHC	4 cut(s)	206, 501, 555, 748
SexAI	ACCWGGT	1 cut(s)	513
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	3 cut(s)	166, 192, 736
SfoI	GGCGCC	1 cut(s)	289
SinI	GGWCC	3 cut(s)	517, 573, 720
SmiMI	CAYNNNNRTG	2 cut(s)	69, 689
SphI	GCATGC	1 cut(s)	68
Sse9I	AATT	3 cut(s)	310, 604, 749
SsiI	CCGC	3 cut(s)	117, 682, 754
SspDI	GGCGCC	1 cut(s)	287
SspMI	CTAG	1 cut(s)	757
StyD4I	CCNGG	4 cut(s)	128, 283, 513, 575
TaaI	ACNGT	3 cut(s)	170, 688, 740
TaiI	ACGT	1 cut(s)	534
TasI	AATT	3 cut(s)	310, 604, 749
TatI	WGTACW	1 cut(s)	417
TauI	GCSGC	1 cut(s)	684
TfiI	GAWTC	1 cut(s)	483
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	5 cut(s)	204, 211, 679, 693, 745
TseFI	GTSAC	3 cut(s)	263, 298, 664
TseI	GCWGC	2 cut(s)	194, 704
Tsp45I	GTSAC	3 cut(s)	263, 298, 664
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	5 cut(s)	204, 211, 679, 693, 745
Van91I	CCANNNNNTGG	1 cut(s)	606
VneI	GTGCAC	1 cut(s)	551
VpaK11BI	GGWCC	3 cut(s)	517, 573, 720
XceI	RCATGY	1 cut(s)	68
XspI	CTAG	1 cut(s)	757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.