Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003982

Physical Location & Seq

Genomic Coordinates Forward (+)

60618581 .. 60620409

Gene Structure 1829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00380460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGAAAATGGCTTCTGCTGTGTTTTTCTTGGTGGGTCTTCTTGCAATGGTGACCTGTGCGCATGCTTATGGTGGTGGTGGTTGGGTTAACGCTCGTGCCACTTTCTATGGAGGTGGTGATGCTTCTGGAACAATGGGTGGTGCTTGTGGGTATGGAAACCTCTACAGCCAGGGGTATGGTACAAACACTGCTGCTCTGAGCACTGCTCTGTTCAACAATGGGCTGGGATGTGGGTCTTGCTATGAAATTAGGTGTGTGAATGACCCAAAATGGTGCCTTCCTGGCTCCATTGTGGTCACAGCCACTAATTTCTGCCCTCCAAACAATGCCCTACCTAACAATGCTGGGGGATGGTGCAACCCTCCTCAGCATCACTTTGACCTCTCTCAACCTGTATTCCAGCACATTGCTCAATACAAAGCTGGAGTTGTCCCTGTTTCTTACAGAAGGGTACCCTGCAGCAGAAGGGGAGGCATCAGATTCACCATCAATGGCCACTCCTACTTCAACCTGGTTTTGATCACGAACGTTGGTGGTGCTGGTGATGTGCACTCTGTTTCAGTCAAAGGGTCCAGAACCGGTTGGCAACCAATGTCCAGAAACTGGGGGCAAAACTGGCAAAGCAACTCATATCTGAATGGGCAAGCCCTATCCTTCAAGGTCACAACCAGTGATGGCCGCACTGTGGTGTCCTACAATGCTGCCCCAGCTCGTTGGTCCTTTGGCCAGACCTTCAGTGGTGCCCAGTTCCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

251

Amino Acids

26.74

Weight (kDa)

9.43

Isoelectric Point (pI)

34.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	32 - 155	9.2e-10	EXPB1-like domain 1
DPBB_1	PF03330	63 - 148	9.2e-24	Lytic transglycolase
Expansin_C	PF01357	159 - 236	1e-33	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003982)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31140 FvH4_5g14760 FvH4_5g14760
malus_domestica	MD06G1195100.v1.1 MD13G1070200.v1.1 MD14G1202100.v1.1 MD16G1070600.v1.1
prunus_persica	Prupe.1G276700_v2.0.a1 Prupe.5G195200_v2.0.a1
pyrus_communis	pycom06g17260 pycom13g06300 pycom14g16740 pycom16g06140
rosa_chinensis	RchiOBHm_Chr4g0439541 RchiOBHm_Chr7g0181621
rosa_laevigata	RLG00000005178 RLG00000006260
rosa_multiflora	Rmu_sc0000988.1_g000016 Rmu_sc0007276.1_g000013
rosa_roxburghii	Rroxscaffold_3G00271840 Rroxscaffold_5G00380460
rosa_rugosa	Rorug04G0319400 Rorug06G0442600 Rorug06G0442600
rosa_samantha	Rh4AG370600 Rh4BG382400 Rh4CG397000 Rh7AG045000 Rh7BG044000 Rh7BG044100 Rh7CG045700
rosa_wichuraiana	Rw4G031590 Rw7G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	60
Acc65I	GGTACC	1 cut(s)	451
AccB1I	GGYRCC	3 cut(s)	273, 451, 740
AccB7I	CCANNNNNTGG	1 cut(s)	603
AciI	CCGC	2 cut(s)	679, 751
AclI	AACGTT	1 cut(s)	528
AcoI	YGGCCR	3 cut(s)	493, 676, 724
AcuI	CTGAAG	1 cut(s)	718
AfaI	GTAC	2 cut(s)	181, 453
AfiI	CCNNNNNNNGG	2 cut(s)	603, 685
AgeI	ACCGGT	1 cut(s)	578
AgsI	TTSAA	3 cut(s)	214, 508, 658
AjnI	CCWGG	3 cut(s)	168, 280, 510
AleI	CACNNNNGTG	1 cut(s)	686
AluBI	AGCT	2 cut(s)	422, 710
AluI	AGCT	2 cut(s)	422, 710
Alw21I	GWGCWC	2 cut(s)	203, 552
Alw44I	GTGCAC	1 cut(s)	548
AlwNI	CAGNNNCTG	1 cut(s)	603
AoxI	GGCC	3 cut(s)	493, 676, 724
ApaLI	GTGCAC	1 cut(s)	548
ApeKI	GCWGC	3 cut(s)	191, 459, 701
AsiGI	ACCGGT	1 cut(s)	578
Asp718I	GGTACC	1 cut(s)	451
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	2 cut(s)	570, 717
AsuHPI	GGTGA	4 cut(s)	61, 128, 475, 554
AvaII	GGWCC	2 cut(s)	570, 717
BaeGI	GKGCMC	2 cut(s)	552, 745
BalI	TGGCCA	2 cut(s)	495, 726
BanI	GGYRCC	3 cut(s)	273, 451, 740
BauI	CACGAG	1 cut(s)	93
BbsI	GAAGAC	1 cut(s)	29
Bbv12I	GWGCWC	2 cut(s)	203, 552
BbvCI	CCTCAGC	1 cut(s)	366
BbvI	GCAGC	3 cut(s)	178, 471, 688
BccI	CCATC	3 cut(s)	345, 494, 668
BciT130I	CCWGG	3 cut(s)	170, 282, 512
BclI	TGATCA	1 cut(s)	519
BfmI	CTRYAG	2 cut(s)	163, 457
BglI	GCCNNNNNGGC	1 cut(s)	282
BisI	GCNGC	4 cut(s)	192, 460, 679, 702
BlsI	GCNGC	4 cut(s)	193, 461, 680, 703
Bme1390I	CCNGG	3 cut(s)	170, 282, 512
Bme18I	GGWCC	2 cut(s)	570, 717
BmgT120I	GGNCC	2 cut(s)	570, 717
BmiI	GGNNCC	5 cut(s)	275, 286, 453, 571, 742
BmrFI	CCNGG	3 cut(s)	170, 282, 512
BmrI	ACTGGG	2 cut(s)	613, 739
BmsI	GCATC	3 cut(s)	109, 379, 483
BmuI	ACTGGG	2 cut(s)	613, 739
BpiI	GAAGAC	1 cut(s)	29
BplI	GAGNNNNNCTC	2 cut(s)	190, 222
BpmI	CTGGAG	1 cut(s)	444
Bpu10I	CCTNAGC	1 cut(s)	366
BsaJI	CCNNGG	1 cut(s)	169
BsaWI	WCCGGW	1 cut(s)	578
Bsc4I	CCNNNNNNNGG	2 cut(s)	603, 685
Bse118I	RCCGGY	1 cut(s)	578
Bse1I	ACTGG	4 cut(s)	608, 620, 669, 745
Bse3DI	GCAATG	2 cut(s)	51, 405
BseBI	CCWGG	3 cut(s)	170, 282, 512
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	2 cut(s)	233, 356
BseLI	CCNNNNNNNGG	2 cut(s)	603, 685
BseMI	GCAATG	2 cut(s)	51, 405
BseMII	CTCAG	2 cut(s)	188, 380
BseNI	ACTGG	4 cut(s)	608, 620, 669, 745
BseRI	GAGGAG	1 cut(s)	354
BseSI	GKGCMC	2 cut(s)	552, 745
BseXI	GCAGC	3 cut(s)	178, 471, 688
BseYI	CCCAGC	3 cut(s)	223, 344, 706
BshFI	GGCC	3 cut(s)	495, 678, 726
BshNI	GGYRCC	3 cut(s)	273, 451, 740
BshTI	ACCGGT	1 cut(s)	578
BsiHKAI	GWGCWC	2 cut(s)	203, 552
BsiSI	CCGG	1 cut(s)	579
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	2 cut(s)	603, 685
BsmFI	GGGAC	1 cut(s)	416
BsnI	GGCC	3 cut(s)	495, 678, 726
Bsp1286I	GDGCHC	3 cut(s)	203, 552, 745
Bsp143I	GATC	1 cut(s)	519
BspACI	CCGC	2 cut(s)	679, 751
BspANI	GGCC	3 cut(s)	495, 678, 726
BspCNI	CTCAG	2 cut(s)	189, 379
BspLI	GGNNCC	5 cut(s)	275, 286, 453, 571, 742
BspMAI	CTGCAG	1 cut(s)	461
BspT107I	GGYRCC	3 cut(s)	273, 451, 740
BsrDI	GCAATG	2 cut(s)	51, 405
BsrFI	RCCGGY	1 cut(s)	578
BsrI	ACTGG	4 cut(s)	608, 620, 669, 745
BssAI	RCCGGY	1 cut(s)	578
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	1 cut(s)	519
BssSI	CACGAG	1 cut(s)	93
Bst2BI	CACGAG	1 cut(s)	93
Bst2UI	CCWGG	3 cut(s)	170, 282, 512
Bst4CI	ACNGT	1 cut(s)	685
BstC8I	GCNNGC	2 cut(s)	63, 645
BstDEI	CTNAG	2 cut(s)	197, 366
BstEII	GGTNACC	1 cut(s)	49
BstF5I	GGATG	2 cut(s)	233, 356
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	1 cut(s)	522
BstMBI	GATC	1 cut(s)	519
BstMWI	GCNNNNNNNGC	3 cut(s)	282, 616, 707
BstNI	CCWGG	3 cut(s)	170, 282, 512
BstNSI	RCATGY	1 cut(s)	65
BstPI	GGTNACC	1 cut(s)	49
BstSCI	CCNGG	3 cut(s)	168, 280, 510
BstSFI	CTRYAG	2 cut(s)	163, 457
BstSLI	GKGCMC	2 cut(s)	552, 745
BstV1I	GCAGC	3 cut(s)	178, 471, 688
BstV2I	GAAGAC	1 cut(s)	29
BstXI	CCANNNNNNTGG	2 cut(s)	176, 714
BsuRI	GGCC	3 cut(s)	495, 678, 726
BtsCI	GGATG	2 cut(s)	233, 356
BtsI	GCAGTG	2 cut(s)	186, 201
BtsIMutI	CAGTG	5 cut(s)	186, 201, 676, 681, 742
Cac8I	GCNNGC	2 cut(s)	63, 645
CaiI	CAGNNNCTG	1 cut(s)	603
CfoI	GCGC	1 cut(s)	61
Cfr10I	RCCGGY	1 cut(s)	578
Cfr13I	GGNCC	2 cut(s)	570, 717
CsiI	ACCWGGT	1 cut(s)	510
Csp6I	GTAC	2 cut(s)	180, 452
CspAI	ACCGGT	1 cut(s)	578
CviAII	CATG	1 cut(s)	62
CviQI	GTAC	2 cut(s)	180, 452
DdeI	CTNAG	2 cut(s)	197, 366
DpnI	GATC	1 cut(s)	521
DpnII	GATC	1 cut(s)	519
EaeI	YGGCCR	3 cut(s)	493, 676, 724
Eco47I	GGWCC	2 cut(s)	570, 717
Eco57I	CTGAAG	1 cut(s)	718
Eco91I	GGTNACC	1 cut(s)	49
EcoO65I	GGTNACC	1 cut(s)	49
EcoRII	CCWGG	3 cut(s)	168, 280, 510
FaeI	CATG	1 cut(s)	65
FaiI	YATR	7 cut(s)	63, 69, 108, 153, 177, 243, 631
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	1 cut(s)	61
FbaI	TGATCA	1 cut(s)	519
Fnu4HI	GCNGC	4 cut(s)	192, 460, 679, 702
FokI	GGATG	2 cut(s)	240, 363
Fsp4HI	GCNGC	4 cut(s)	192, 460, 679, 702
FspAI	RTGCGCAY	1 cut(s)	60
FspI	TGCGCA	1 cut(s)	60
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	4 cut(s)	192, 460, 679, 702
GsaI	CCCAGC	3 cut(s)	227, 348, 710
GsuI	CTGGAG	1 cut(s)	444
HaeIII	GGCC	3 cut(s)	495, 678, 726
HapII	CCGG	1 cut(s)	579
HhaI	GCGC	1 cut(s)	61
Hin1II	CATG	1 cut(s)	65
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	1 cut(s)	480
HpaI	GTTAAC	1 cut(s)	88
HpaII	CCGG	1 cut(s)	579
HphI	GGTGA	4 cut(s)	61, 128, 475, 554
Hpy166II	GTNNAC	2 cut(s)	88, 550
Hpy188I	TCNGA	3 cut(s)	198, 479, 636
Hpy188III	TCNNGA	4 cut(s)	126, 523, 573, 597
Hpy8I	GTNNAC	2 cut(s)	88, 550
HpyAV	CCTTC	5 cut(s)	287, 441, 459, 664, 742
HpyCH4III	ACNGT	1 cut(s)	685
HpyCH4IV	ACGT	1 cut(s)	528
HpyCH4V	TGCA	4 cut(s)	44, 357, 459, 550
HpyF10VI	GCNNNNNNNGC	3 cut(s)	282, 616, 707
HpyF3I	CTNAG	2 cut(s)	197, 366
HpySE526I	ACGT	1 cut(s)	528
Hsp92II	CATG	1 cut(s)	65
HspAI	GCGC	1 cut(s)	59
KpnI	GGTACC	1 cut(s)	455
Ksp22I	TGATCA	1 cut(s)	519
KspAI	GTTAAC	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	519
LmnI	GCTCC	1 cut(s)	290
Lsp1109I	GCAGC	3 cut(s)	178, 471, 688
LweI	GCATC	3 cut(s)	109, 379, 483
MabI	ACCWGGT	1 cut(s)	510
MaeII	ACGT	1 cut(s)	528
MaeIII	GTNAC	3 cut(s)	49, 295, 661
MalI	GATC	1 cut(s)	521
MboI	GATC	1 cut(s)	519
MboII	GAAGA	1 cut(s)	29
MhlI	GDGCHC	3 cut(s)	203, 552, 745
MlsI	TGGCCA	2 cut(s)	495, 726
MluCI	AATT	2 cut(s)	246, 307
MluNI	TGGCCA	2 cut(s)	495, 726
MnlI	CCTC	7 cut(s)	104, 170, 327, 372, 375, 392, 464
Mox20I	TGGCCA	2 cut(s)	495, 726
MscI	TGGCCA	2 cut(s)	495, 726
MseI	TTAA	1 cut(s)	87
MslI	CAYNNNNRTG	2 cut(s)	66, 686
Msp20I	TGGCCA	2 cut(s)	495, 726
MspI	CCGG	1 cut(s)	579
MspR9I	CCNGG	3 cut(s)	170, 282, 512
MvaI	CCWGG	3 cut(s)	170, 282, 512
MwoI	GCNNNNNNNGC	3 cut(s)	282, 616, 707
NdeII	GATC	1 cut(s)	519
NlaIII	CATG	1 cut(s)	65
NlaIV	GGNNCC	5 cut(s)	275, 286, 453, 571, 742
NmuCI	GTSAC	3 cut(s)	49, 295, 661
NsbI	TGCGCA	1 cut(s)	60
NspI	RCATGY	1 cut(s)	65
OliI	CACNNNNGTG	1 cut(s)	686
PaeI	GCATGC	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	480
PflMI	CCANNNNNTGG	1 cut(s)	603
PinAI	ACCGGT	1 cut(s)	578
PkrI	GCNGC	4 cut(s)	193, 461, 680, 703
Psp1406I	AACGTT	1 cut(s)	528
Psp6I	CCWGG	3 cut(s)	168, 280, 510
PspEI	GGTNACC	1 cut(s)	49
PspFI	CCCAGC	3 cut(s)	223, 344, 706
PspGI	CCWGG	3 cut(s)	168, 280, 510
PspN4I	GGNNCC	5 cut(s)	275, 286, 453, 571, 742
PspPI	GGNCC	2 cut(s)	570, 717
PstI	CTGCAG	1 cut(s)	461
PstNI	CAGNNNCTG	1 cut(s)	603
RsaI	GTAC	2 cut(s)	181, 453
RsaNI	GTAC	2 cut(s)	180, 452
RseI	CAYNNNNRTG	2 cut(s)	66, 686
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	4 cut(s)	192, 460, 679, 702
Sau3AI	GATC	1 cut(s)	519
Sau96I	GGNCC	2 cut(s)	570, 717
ScrFI	CCNGG	3 cut(s)	170, 282, 512
SduI	GDGCHC	3 cut(s)	203, 552, 745
SexAI	ACCWGGT	1 cut(s)	510
SfaNI	GCATC	3 cut(s)	109, 379, 483
SfcI	CTRYAG	2 cut(s)	163, 457
SinI	GGWCC	2 cut(s)	570, 717
SmiMI	CAYNNNNRTG	2 cut(s)	66, 686
SphI	GCATGC	1 cut(s)	65
Sse9I	AATT	2 cut(s)	246, 307
SsiI	CCGC	2 cut(s)	679, 751
StyD4I	CCNGG	3 cut(s)	168, 280, 510
TaaI	ACNGT	1 cut(s)	685
TaiI	ACGT	1 cut(s)	531
TasI	AATT	2 cut(s)	246, 307
TauI	GCSGC	1 cut(s)	681
TfiI	GAWTC	1 cut(s)	480
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	5 cut(s)	193, 208, 676, 688, 742
TseFI	GTSAC	3 cut(s)	49, 295, 661
TseI	GCWGC	3 cut(s)	191, 459, 701
Tsp45I	GTSAC	3 cut(s)	49, 295, 661
TspDTI	ATGAA	2 cut(s)	17, 258
TspRI	CASTG	5 cut(s)	193, 208, 676, 688, 742
Van91I	CCANNNNNTGG	1 cut(s)	603
VneI	GTGCAC	1 cut(s)	548
VpaK11BI	GGWCC	2 cut(s)	570, 717
XceI	RCATGY	1 cut(s)	65
XcmI	CCANNNNNNNNNTGG	1 cut(s)	734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.