Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0003982

Physical Location & Seq

Genomic Coordinates Reverse (-)

29091742 .. 29093946

Gene Structure 2205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1202100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCAATTCTTGGTTTTCTCTTGGTGGTTCTTCTTTCTTTGAGCTCTTTTGCTTGTGGGTATGGAGGAGGTGACGGTGGTTGGGTTGATGCACATGCCACTTTCTATGGCGGAGGTGATGCGACCGGTACAATGGGTGGGGCTTGTGGCTATGGAAATCTGTATAGCCAAGGCTATGGAACTAACACTGCAGCTCTGAGCACAGCACTGTTCAACAATGGGTTGAGCTGTGGGGCTTGTTTTGAGATTAGGTGTGTGAGTGACCCCAAATGGTGTCTTCCGGGCTCTATTATGGTCACCGCCACCAATTTCTGCCCGCCAAACGATGCCCTTCCCAACAATGCCGGAGGCTGGTGCAACCCGCCGCAGCACCACTTTGATCTCGCCCAGCCCGTCTTCCAACAGATTGCTCAGTACCGAGCTGGAATCGTGCCTGTGTCTTACAGAAGGGTGCCTTGCTTAAAGAAGGGAGGCATTAGATTCACAATCAACGGTCATTCATACTTCAATTTAGTGCTGATCACAAACGTTGGAGGTGCTGGTGACGTTCATGCAGTTTCCATCAAAGGGTCAAGAACTGGCTGGCAACCCATGTCAAGGAACTGGGGCCAAAACTGGCAGAGCAACTCTTTCCTCAACGGCCAGAGCCTCTCCTTCAAGGTCACAGCCAGCGACGGCCGCACGATTGTCTCCAACAACGTTGTTCCTGCCGGCTGGTCCTTTGGCCAAACATTCAGCGGCCAACAATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

251

Amino Acids

26.43

Weight (kDa)

8.6

Isoelectric Point (pI)

32.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	32 - 154	1.8e-08	EXPB1-like domain 1
DPBB_1	PF03330	63 - 148	1.7e-22	Lytic transglycolase
Expansin_C	PF01357	159 - 236	1.7e-33	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003982)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31140 FvH4_5g14760 FvH4_5g14760
malus_domestica	MD06G1195100.v1.1 MD13G1070200.v1.1 MD14G1202100.v1.1 MD16G1070600.v1.1
prunus_persica	Prupe.1G276700_v2.0.a1 Prupe.5G195200_v2.0.a1
pyrus_communis	pycom06g17260 pycom13g06300 pycom14g16740 pycom16g06140
rosa_chinensis	RchiOBHm_Chr4g0439541 RchiOBHm_Chr7g0181621
rosa_laevigata	RLG00000005178 RLG00000006260
rosa_multiflora	Rmu_sc0000988.1_g000016 Rmu_sc0007276.1_g000013
rosa_roxburghii	Rroxscaffold_3G00271840 Rroxscaffold_5G00380460
rosa_rugosa	Rorug04G0319400 Rorug06G0442600 Rorug06G0442600
rosa_samantha	Rh4AG370600 Rh4BG382400 Rh4CG397000 Rh7AG045000 Rh7BG044000 Rh7BG044100 Rh7CG045700
rosa_wichuraiana	Rw4G031590 Rw7G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	451
AciI	CCGC	7 cut(s)	111, 300, 317, 362, 365, 679, 738
AclI	AACGTT	2 cut(s)	528, 699
AcoI	YGGCCR	4 cut(s)	640, 676, 724, 739
AfaI	GTAC	2 cut(s)	130, 416
AfiI	CCNNNNNNNGG	3 cut(s)	351, 567, 597
AgeI	ACCGGT	1 cut(s)	125
AgsI	TTSAA	3 cut(s)	214, 508, 658
AluBI	AGCT	4 cut(s)	45, 194, 228, 422
AluI	AGCT	4 cut(s)	45, 194, 228, 422
Alw21I	GWGCWC	2 cut(s)	47, 203
Alw26I	GTCTC	1 cut(s)	694
AoxI	GGCC	5 cut(s)	607, 640, 676, 724, 739
ApeKI	GCWGC	2 cut(s)	191, 367
AsiGI	ACCGGT	1 cut(s)	125
AspS9I	GGNCC	2 cut(s)	607, 717
AsuC2I	CCSGG	1 cut(s)	282
AsuHPI	GGTGA	4 cut(s)	83, 128, 289, 554
AvaII	GGWCC	1 cut(s)	717
BalI	TGGCCA	1 cut(s)	726
BanI	GGYRCC	1 cut(s)	451
BanII	GRGCYC	2 cut(s)	47, 287
BbsI	GAAGAC	2 cut(s)	269, 388
Bbv12I	GWGCWC	2 cut(s)	47, 203
BbvI	GCAGC	2 cut(s)	203, 379
BccI	CCATC	1 cut(s)	569
BceAI	ACGGC	2 cut(s)	655, 691
BclI	TGATCA	1 cut(s)	519
BcnI	CCSGG	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	694
BfmI	CTRYAG	1 cut(s)	189
BisI	GCNGC	5 cut(s)	192, 365, 368, 679, 739
BlsI	GCNGC	5 cut(s)	193, 366, 369, 680, 740
Bme1390I	CCNGG	1 cut(s)	282
Bme18I	GGWCC	1 cut(s)	717
BmgT120I	GGNCC	2 cut(s)	607, 717
BmiI	GGNNCC	2 cut(s)	453, 608
BmrFI	CCNGG	1 cut(s)	282
BmrI	ACTGGG	1 cut(s)	613
BmsI	GCATC	3 cut(s)	79, 109, 316
BmuI	ACTGGG	1 cut(s)	613
BpiI	GAAGAC	2 cut(s)	269, 388
BpuMI	CCSGG	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	169
BsaWI	WCCGGW	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	3 cut(s)	351, 567, 597
Bse118I	RCCGGY	2 cut(s)	125, 710
Bse1I	ACTGG	3 cut(s)	583, 608, 620
BseDI	CCNNGG	1 cut(s)	169
BseLI	CCNNNNNNNGG	3 cut(s)	351, 567, 597
BseMII	CTCAG	2 cut(s)	188, 425
BseNI	ACTGG	3 cut(s)	583, 608, 620
BseRI	GAGGAG	1 cut(s)	81
BseX3I	CGGCCG	1 cut(s)	676
BseXI	GCAGC	2 cut(s)	203, 379
BseYI	CCCAGC	1 cut(s)	387
Bsh1285I	CGRYCG	2 cut(s)	126, 679
BshFI	GGCC	5 cut(s)	609, 642, 678, 726, 741
BshNI	GGYRCC	1 cut(s)	451
BshTI	ACCGGT	1 cut(s)	125
BsiEI	CGRYCG	2 cut(s)	126, 679
BsiHKAI	GWGCWC	2 cut(s)	47, 203
BsiSI	CCGG	4 cut(s)	126, 281, 345, 711
BslI	CCNNNNNNNGG	3 cut(s)	351, 567, 597
BsmAI	GTCTC	1 cut(s)	694
BsnI	GGCC	5 cut(s)	609, 642, 678, 726, 741
Bsp1286I	GDGCHC	3 cut(s)	47, 203, 287
Bsp143I	GATC	2 cut(s)	379, 519
BspACI	CCGC	7 cut(s)	111, 300, 317, 362, 365, 679, 738
BspANI	GGCC	5 cut(s)	609, 642, 678, 726, 741
BspCNI	CTCAG	2 cut(s)	189, 424
BspLI	GGNNCC	2 cut(s)	453, 608
BspMAI	CTGCAG	1 cut(s)	193
BspT107I	GGYRCC	1 cut(s)	451
BsrFI	RCCGGY	2 cut(s)	125, 710
BsrI	ACTGG	3 cut(s)	583, 608, 620
BssAI	RCCGGY	2 cut(s)	125, 710
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	2 cut(s)	379, 519
BssT1I	CCWWGG	1 cut(s)	169
Bst4CI	ACNGT	3 cut(s)	77, 210, 494
BstC8I	GCNNGC	4 cut(s)	317, 584, 670, 712
BstDEI	CTNAG	2 cut(s)	197, 411
BstEII	GGTNACC	1 cut(s)	295
BstKTI	GATC	2 cut(s)	382, 522
BstMAI	GTCTC	1 cut(s)	694
BstMBI	GATC	2 cut(s)	379, 519
BstMCI	CGRYCG	2 cut(s)	126, 679
BstMWI	GCNNNNNNNGC	1 cut(s)	678
BstNSI	RCATGY	1 cut(s)	98
BstPI	GGTNACC	1 cut(s)	295
BstSCI	CCNGG	1 cut(s)	280
BstSFI	CTRYAG	1 cut(s)	189
BstV1I	GCAGC	2 cut(s)	203, 379
BstV2I	GAAGAC	2 cut(s)	269, 388
BstXI	CCANNNNNNTGG	1 cut(s)	176
BstZI	CGGCCG	1 cut(s)	676
BsuRI	GGCC	5 cut(s)	609, 642, 678, 726, 741
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	2 cut(s)	186, 206
Cac8I	GCNNGC	4 cut(s)	317, 584, 670, 712
Cfr10I	RCCGGY	2 cut(s)	125, 710
Cfr13I	GGNCC	2 cut(s)	607, 717
Csp6I	GTAC	2 cut(s)	129, 415
CspAI	ACCGGT	1 cut(s)	125
CviAII	CATG	3 cut(s)	95, 551, 592
CviQI	GTAC	2 cut(s)	129, 415
DdeI	CTNAG	2 cut(s)	197, 411
DpnI	GATC	2 cut(s)	381, 521
DpnII	GATC	2 cut(s)	379, 519
EaeI	YGGCCR	4 cut(s)	640, 676, 724, 739
EagI	CGGCCG	1 cut(s)	676
EciI	GGCGGA	1 cut(s)	126
Ecl136II	GAGCTC	1 cut(s)	45
EclXI	CGGCCG	1 cut(s)	676
Eco130I	CCWWGG	1 cut(s)	169
Eco24I	GRGCYC	2 cut(s)	47, 287
Eco47I	GGWCC	1 cut(s)	717
Eco52I	CGGCCG	1 cut(s)	676
Eco53kI	GAGCTC	1 cut(s)	45
Eco91I	GGTNACC	1 cut(s)	295
EcoICRI	GAGCTC	1 cut(s)	45
EcoO65I	GGTNACC	1 cut(s)	295
EcoT14I	CCWWGG	1 cut(s)	169
EcoT38I	GRGCYC	2 cut(s)	47, 287
ErhI	CCWWGG	1 cut(s)	169
FaeI	CATG	3 cut(s)	98, 554, 595
FalI	AAGNNNNNCTT	2 cut(s)	439, 471
FatI	CATG	3 cut(s)	94, 550, 591
FauI	CCCGC	2 cut(s)	324, 369
FbaI	TGATCA	1 cut(s)	519
Fnu4HI	GCNGC	5 cut(s)	192, 365, 368, 679, 739
FriOI	GRGCYC	2 cut(s)	47, 287
Fsp4HI	GCNGC	5 cut(s)	192, 365, 368, 679, 739
GluI	GCNGC	5 cut(s)	192, 365, 368, 679, 739
GsaI	CCCAGC	1 cut(s)	391
HaeIII	GGCC	5 cut(s)	609, 642, 678, 726, 741
HapII	CCGG	4 cut(s)	126, 281, 345, 711
Hin1II	CATG	3 cut(s)	98, 554, 595
HinfI	GANTC	2 cut(s)	426, 480
HpaII	CCGG	4 cut(s)	126, 281, 345, 711
HphI	GGTGA	4 cut(s)	83, 128, 289, 554
Hpy188I	TCNGA	1 cut(s)	198
Hpy188III	TCNNGA	1 cut(s)	573
Hpy99I	CGWCG	1 cut(s)	677
HpyAV	CCTTC	4 cut(s)	341, 441, 460, 664
HpyCH4III	ACNGT	3 cut(s)	77, 210, 494
HpyCH4IV	ACGT	3 cut(s)	528, 546, 699
HpyCH4V	TGCA	4 cut(s)	92, 191, 357, 554
HpyF10VI	GCNNNNNNNGC	1 cut(s)	678
HpyF3I	CTNAG	2 cut(s)	197, 411
HpySE526I	ACGT	3 cut(s)	528, 546, 699
Hsp92II	CATG	3 cut(s)	98, 554, 595
KroI	GCCGGC	1 cut(s)	710
KroNI	GCCGGC	1 cut(s)	712
Ksp22I	TGATCA	1 cut(s)	519
Kzo9I	GATC	2 cut(s)	379, 519
Lsp1109I	GCAGC	2 cut(s)	203, 379
LweI	GCATC	3 cut(s)	79, 109, 316
MaeII	ACGT	3 cut(s)	528, 546, 699
MaeIII	GTNAC	5 cut(s)	71, 260, 295, 542, 661
MalI	GATC	2 cut(s)	381, 521
MboI	GATC	2 cut(s)	379, 519
MboII	GAAGA	3 cut(s)	23, 269, 388
MhlI	GDGCHC	3 cut(s)	47, 203, 287
MlsI	TGGCCA	1 cut(s)	726
MluCI	AATT	4 cut(s)	6, 307, 508, 746
MluNI	TGGCCA	1 cut(s)	726
MmeI	TCCRAC	3 cut(s)	424, 511, 717
MnlI	CCTC	8 cut(s)	59, 62, 107, 341, 464, 527, 644, 659
Mox20I	TGGCCA	1 cut(s)	726
MroNI	GCCGGC	1 cut(s)	710
MscI	TGGCCA	1 cut(s)	726
MseI	TTAA	1 cut(s)	461
Msp20I	TGGCCA	1 cut(s)	726
MspA1I	CMGCKG	1 cut(s)	738
MspI	CCGG	4 cut(s)	126, 281, 345, 711
MspR9I	CCNGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	1 cut(s)	678
NaeI	GCCGGC	1 cut(s)	712
NciI	CCSGG	1 cut(s)	282
NdeII	GATC	2 cut(s)	379, 519
NgoMIV	GCCGGC	1 cut(s)	710
NlaIII	CATG	3 cut(s)	98, 554, 595
NlaIV	GGNNCC	2 cut(s)	453, 608
NmuCI	GTSAC	5 cut(s)	71, 260, 295, 542, 661
NspI	RCATGY	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	1 cut(s)	390
PdiI	GCCGGC	1 cut(s)	712
PfeI	GAWTC	2 cut(s)	426, 480
PinAI	ACCGGT	1 cut(s)	125
PkrI	GCNGC	5 cut(s)	193, 366, 369, 680, 740
Psp124BI	GAGCTC	1 cut(s)	47
Psp1406I	AACGTT	2 cut(s)	528, 699
PspEI	GGTNACC	1 cut(s)	295
PspFI	CCCAGC	1 cut(s)	387
PspN4I	GGNNCC	2 cut(s)	453, 608
PspPI	GGNCC	2 cut(s)	607, 717
PstI	CTGCAG	1 cut(s)	193
RsaI	GTAC	2 cut(s)	130, 416
RsaNI	GTAC	2 cut(s)	129, 415
SacI	GAGCTC	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	461
SatI	GCNGC	5 cut(s)	192, 365, 368, 679, 739
Sau3AI	GATC	2 cut(s)	379, 519
Sau96I	GGNCC	2 cut(s)	607, 717
ScrFI	CCNGG	1 cut(s)	282
SduI	GDGCHC	3 cut(s)	47, 203, 287
SfaNI	GCATC	3 cut(s)	79, 109, 316
SfcI	CTRYAG	1 cut(s)	189
SinI	GGWCC	1 cut(s)	717
Sse9I	AATT	4 cut(s)	6, 307, 508, 746
SsiI	CCGC	7 cut(s)	111, 300, 317, 362, 365, 679, 738
SstI	GAGCTC	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	280
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	3 cut(s)	77, 210, 494
TaiI	ACGT	3 cut(s)	531, 549, 702
TasI	AATT	4 cut(s)	6, 307, 508, 746
TauI	GCSGC	3 cut(s)	367, 681, 741
TfiI	GAWTC	2 cut(s)	426, 480
Tru1I	TTAA	1 cut(s)	461
Tru9I	TTAA	1 cut(s)	461
TscAI	CASTG	2 cut(s)	193, 213
TseFI	GTSAC	5 cut(s)	71, 260, 295, 542, 661
TseI	GCWGC	2 cut(s)	191, 367
Tsp45I	GTSAC	5 cut(s)	71, 260, 295, 542, 661
TspDTI	ATGAA	2 cut(s)	489, 539
TspRI	CASTG	2 cut(s)	193, 213
VpaK11BI	GGWCC	1 cut(s)	717
XceI	RCATGY	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.