Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0003982

Physical Location & Seq

Genomic Coordinates Forward (+)

4956658 .. 4958514

Gene Structure 1857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1070600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGTGGGTATTCTTGCAATGTTGGTGGCCTCTGCACATGCTTACGGGGGAGGAGGGTGGGTTAACGCTCGCGCCACTTTCTACGGCGGCGGTGACGCTTCTGGCACAATGGGCGGAGCTTGTGGGTACGGCAACCTCTACAGCCAGGGGTACGGAACCAACACGGCGGCCCTGAGCACTGCTCTGTTCAACAATGGGCTGGGGTGCGGATCTTGCTACGAGATTAGGTGTGTGAACGACCCCAAGTGGTGCCTGCCGGGCTCCATTGTGGTCACCGCCACCAATTTCTGTCCACCAAACAACGCCCTCCCCAACAATGCCGGCGGCTGGTGCAACCCTCCCCAGCACCACTTCGACCTCTCTCAGCCTGTCTTCCAGCACATTGCCCAATACAAAGCCGGAGTTGTGCCTGTGTCCTACAGAAGGGTACCCTGCAGTAGAAGGGGAGGCATCAGATACACAATCAACGGTCACTCCTACTTCAACCTGGTCCTCATCACAAATGTTGGTGGAGCCGGTGATGTGCACTCTGTTTCCATCAAGGGGTCCAGAACCGGCTGGCAAGCAATGTCCAGAAACTGGGGGCAAAACTGGCAATCCAACAGCTACCTCAACGGCCAAGCCCTCTCTTTCAAGGTCACAACCAGTGACGGCCGTACTGTTGTGTCCTACAATGCTGCCCCAGCTGGGTGGTCCTTTGGGCAGACCTACAGTGGTGCCCAATTCCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

244

Amino Acids

25.73

Weight (kDa)

9.28

Isoelectric Point (pI)

30.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	24 - 147	8.5e-10	EXPB1-like domain 1
DPBB_1	PF03330	55 - 140	8.6e-24	Lytic transglycolase
Expansin_C	PF01357	151 - 228	3.2e-32	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003982)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31140 FvH4_5g14760 FvH4_5g14760
malus_domestica	MD06G1195100.v1.1 MD13G1070200.v1.1 MD14G1202100.v1.1 MD16G1070600.v1.1
prunus_persica	Prupe.1G276700_v2.0.a1 Prupe.5G195200_v2.0.a1
pyrus_communis	pycom06g17260 pycom13g06300 pycom14g16740 pycom16g06140
rosa_chinensis	RchiOBHm_Chr4g0439541 RchiOBHm_Chr7g0181621
rosa_laevigata	RLG00000005178 RLG00000006260
rosa_multiflora	Rmu_sc0000988.1_g000016 Rmu_sc0007276.1_g000013
rosa_roxburghii	Rroxscaffold_3G00271840 Rroxscaffold_5G00380460
rosa_rugosa	Rorug04G0319400 Rorug06G0442600 Rorug06G0442600
rosa_samantha	Rh4AG370600 Rh4BG382400 Rh4CG397000 Rh7AG045000 Rh7BG044000 Rh7BG044100 Rh7CG045700
rosa_wichuraiana	Rw4G031590 Rw7G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	427
AccB1I	GGYRCC	3 cut(s)	249, 427, 716
AccB7I	CCANNNNNTGG	1 cut(s)	579
AccII	CGCG	1 cut(s)	72
AciI	CCGC	8 cut(s)	87, 90, 114, 167, 207, 276, 324, 727
AclWI	GGATC	1 cut(s)	217
AcoI	YGGCCR	2 cut(s)	616, 652
AfaI	GTAC	4 cut(s)	128, 152, 429, 658
AfiI	CCNNNNNNNGG	5 cut(s)	327, 423, 543, 579, 687
AgsI	TTSAA	3 cut(s)	190, 484, 634
AjnI	CCWGG	2 cut(s)	144, 486
AluBI	AGCT	3 cut(s)	119, 606, 686
AluI	AGCT	3 cut(s)	119, 606, 686
Alw21I	GWGCWC	2 cut(s)	179, 528
Alw44I	GTGCAC	1 cut(s)	524
AlwI	GGATC	1 cut(s)	217
AlwNI	CAGNNNCTG	1 cut(s)	579
AoxI	GGCC	4 cut(s)	27, 168, 616, 652
ApaLI	GTGCAC	1 cut(s)	524
ApeKI	GCWGC	1 cut(s)	677
Asp718I	GGTACC	1 cut(s)	427
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	4 cut(s)	169, 490, 546, 693
AsuC2I	CCSGG	1 cut(s)	258
AsuHPI	GGTGA	3 cut(s)	104, 265, 530
AvaII	GGWCC	3 cut(s)	490, 546, 693
BaeGI	GKGCMC	2 cut(s)	528, 721
BanI	GGYRCC	3 cut(s)	249, 427, 716
BanII	GRGCYC	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	364
Bbv12I	GWGCWC	2 cut(s)	179, 528
BbvI	GCAGC	1 cut(s)	664
BccI	CCATC	1 cut(s)	545
BceAI	ACGGC	6 cut(s)	100, 145, 180, 631, 639, 667
BciT130I	CCWGG	2 cut(s)	146, 488
BcnI	CCSGG	1 cut(s)	258
BfaI	CTAG	1 cut(s)	730
BfmI	CTRYAG	4 cut(s)	139, 418, 433, 709
BglI	GCCNNNNNGGC	1 cut(s)	258
BisI	GCNGC	4 cut(s)	88, 168, 325, 678
BlsI	GCNGC	4 cut(s)	89, 169, 326, 679
Bme1390I	CCNGG	3 cut(s)	146, 258, 488
Bme18I	GGWCC	3 cut(s)	490, 546, 693
BmgT120I	GGNCC	4 cut(s)	169, 490, 546, 693
BmiI	GGNNCC	7 cut(s)	157, 251, 262, 429, 514, 547, 718
BmrFI	CCNGG	3 cut(s)	146, 258, 488
BmrI	ACTGGG	1 cut(s)	589
BmsI	GCATC	1 cut(s)	459
BmuI	ACTGGG	1 cut(s)	589
BpiI	GAAGAC	1 cut(s)	364
BplI	GAGNNNNNCTC	2 cut(s)	166, 198
Bpu10I	CCTNAGC	1 cut(s)	173
BpuMI	CCSGG	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	145
BsaXI	ACNNNNNCTCC	4 cut(s)	45, 75, 458, 488
Bsc4I	CCNNNNNNNGG	5 cut(s)	327, 423, 543, 579, 687
Bse118I	RCCGGY	3 cut(s)	320, 515, 554
Bse1I	ACTGG	3 cut(s)	584, 596, 645
Bse3DI	GCAATG	3 cut(s)	24, 381, 573
BseBI	CCWGG	2 cut(s)	146, 488
BseDI	CCNNGG	1 cut(s)	145
BseLI	CCNNNNNNNGG	5 cut(s)	327, 423, 543, 579, 687
BseMI	GCAATG	3 cut(s)	24, 381, 573
BseMII	CTCAG	2 cut(s)	164, 377
BseNI	ACTGG	3 cut(s)	584, 596, 645
BseRI	GAGGAG	1 cut(s)	66
BseSI	GKGCMC	2 cut(s)	528, 721
BseX3I	CGGCCG	1 cut(s)	652
BseXI	GCAGC	1 cut(s)	664
BseYI	CCCAGC	4 cut(s)	199, 342, 682, 686
BsgI	GTGCAG	1 cut(s)	18
Bsh1236I	CGCG	1 cut(s)	72
Bsh1285I	CGRYCG	1 cut(s)	655
BshFI	GGCC	4 cut(s)	29, 170, 618, 654
BshNI	GGYRCC	3 cut(s)	249, 427, 716
BsiEI	CGRYCG	1 cut(s)	655
BsiHKAI	GWGCWC	2 cut(s)	179, 528
BsiSI	CCGG	5 cut(s)	257, 321, 399, 516, 555
BslI	CCNNNNNNNGG	5 cut(s)	327, 423, 543, 579, 687
BsnI	GGCC	4 cut(s)	29, 170, 618, 654
Bsp1286I	GDGCHC	4 cut(s)	179, 263, 528, 721
Bsp143I	GATC	1 cut(s)	209
BspACI	CCGC	8 cut(s)	87, 90, 114, 167, 207, 276, 324, 727
BspANI	GGCC	4 cut(s)	29, 170, 618, 654
BspCNI	CTCAG	2 cut(s)	165, 376
BspFNI	CGCG	1 cut(s)	72
BspLI	GGNNCC	7 cut(s)	157, 251, 262, 429, 514, 547, 718
BspMAI	CTGCAG	1 cut(s)	437
BspPI	GGATC	1 cut(s)	217
BspT107I	GGYRCC	3 cut(s)	249, 427, 716
BsrDI	GCAATG	3 cut(s)	24, 381, 573
BsrFI	RCCGGY	3 cut(s)	320, 515, 554
BsrI	ACTGG	3 cut(s)	584, 596, 645
BssAI	RCCGGY	3 cut(s)	320, 515, 554
BssECI	CCNNGG	1 cut(s)	145
BssMI	GATC	1 cut(s)	209
Bst2UI	CCWGG	2 cut(s)	146, 488
Bst4CI	ACNGT	3 cut(s)	470, 661, 713
BstC8I	GCNNGC	5 cut(s)	70, 254, 322, 560, 564
BstDEI	CTNAG	2 cut(s)	173, 363
BstEII	GGTNACC	1 cut(s)	271
BstENI	CCTNNNNNAGG	1 cut(s)	421
BstFNI	CGCG	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	1 cut(s)	212
BstMBI	GATC	1 cut(s)	209
BstMCI	CGRYCG	1 cut(s)	655
BstMWI	GCNNNNNNNGC	6 cut(s)	111, 213, 258, 330, 592, 683
BstNI	CCWGG	2 cut(s)	146, 488
BstNSI	RCATGY	1 cut(s)	41
BstPI	GGTNACC	1 cut(s)	271
BstSCI	CCNGG	3 cut(s)	144, 256, 486
BstSFI	CTRYAG	4 cut(s)	139, 418, 433, 709
BstSLI	GKGCMC	2 cut(s)	528, 721
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	664
BstV2I	GAAGAC	1 cut(s)	364
BstX2I	RGATCY	1 cut(s)	209
BstXI	CCANNNNNNTGG	1 cut(s)	690
BstYI	RGATCY	1 cut(s)	209
BstZI	CGGCCG	1 cut(s)	652
BsuRI	GGCC	4 cut(s)	29, 170, 618, 654
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	3 cut(s)	177, 652, 718
Cac8I	GCNNGC	5 cut(s)	70, 254, 322, 560, 564
CaiI	CAGNNNCTG	1 cut(s)	579
CfoI	GCGC	1 cut(s)	74
Cfr10I	RCCGGY	3 cut(s)	320, 515, 554
Cfr13I	GGNCC	4 cut(s)	169, 490, 546, 693
CseI	GACGC	1 cut(s)	104
CsiI	ACCWGGT	1 cut(s)	486
Csp6I	GTAC	4 cut(s)	127, 151, 428, 657
CspCI	CAANNNNNGTGG	2 cut(s)	6, 41
CviAII	CATG	1 cut(s)	38
CviQI	GTAC	4 cut(s)	127, 151, 428, 657
DdeI	CTNAG	2 cut(s)	173, 363
DpnI	GATC	1 cut(s)	211
DpnII	GATC	1 cut(s)	209
EaeI	YGGCCR	2 cut(s)	616, 652
EagI	CGGCCG	1 cut(s)	652
EciI	GGCGGA	1 cut(s)	129
EclXI	CGGCCG	1 cut(s)	652
Eco24I	GRGCYC	1 cut(s)	263
Eco47I	GGWCC	3 cut(s)	490, 546, 693
Eco52I	CGGCCG	1 cut(s)	652
Eco91I	GGTNACC	1 cut(s)	271
EcoNI	CCTNNNNNAGG	1 cut(s)	421
EcoO65I	GGTNACC	1 cut(s)	271
EcoRII	CCWGG	2 cut(s)	144, 486
EcoT38I	GRGCYC	1 cut(s)	263
FaeI	CATG	1 cut(s)	41
FaiI	YATR	1 cut(s)	39
FatI	CATG	1 cut(s)	37
Fnu4HI	GCNGC	4 cut(s)	88, 168, 325, 678
FriOI	GRGCYC	1 cut(s)	263
Fsp4HI	GCNGC	4 cut(s)	88, 168, 325, 678
FspBI	CTAG	1 cut(s)	730
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	4 cut(s)	88, 168, 325, 678
GsaI	CCCAGC	4 cut(s)	203, 346, 686, 690
HaeIII	GGCC	4 cut(s)	29, 170, 618, 654
HapII	CCGG	5 cut(s)	257, 321, 399, 516, 555
HgaI	GACGC	1 cut(s)	104
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	1 cut(s)	41
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HpaI	GTTAAC	1 cut(s)	64
HpaII	CCGG	5 cut(s)	257, 321, 399, 516, 555
HphI	GGTGA	3 cut(s)	104, 265, 530
Hpy166II	GTNNAC	4 cut(s)	64, 235, 293, 526
Hpy188I	TCNGA	1 cut(s)	455
Hpy188III	TCNNGA	2 cut(s)	549, 573
Hpy8I	GTNNAC	4 cut(s)	64, 235, 293, 526
HpyAV	CCTTC	2 cut(s)	417, 435
HpyCH4III	ACNGT	3 cut(s)	470, 661, 713
HpyCH4V	TGCA	5 cut(s)	17, 35, 333, 435, 526
HpyF10VI	GCNNNNNNNGC	6 cut(s)	111, 213, 258, 330, 592, 683
HpyF3I	CTNAG	2 cut(s)	173, 363
Hsp92II	CATG	1 cut(s)	41
HspAI	GCGC	1 cut(s)	72
KpnI	GGTACC	1 cut(s)	431
KroI	GCCGGC	1 cut(s)	320
KroNI	GCCGGC	1 cut(s)	322
KspAI	GTTAAC	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	209
LmnI	GCTCC	3 cut(s)	116, 266, 512
Lsp1109I	GCAGC	1 cut(s)	664
LweI	GCATC	1 cut(s)	459
MabI	ACCWGGT	1 cut(s)	486
MaeI	CTAG	1 cut(s)	730
MaeIII	GTNAC	5 cut(s)	92, 271, 470, 637, 647
MalI	GATC	1 cut(s)	211
MboI	GATC	1 cut(s)	209
MboII	GAAGA	1 cut(s)	364
MflI	RGATCY	1 cut(s)	209
MhlI	GDGCHC	4 cut(s)	179, 263, 528, 721
MluCI	AATT	2 cut(s)	283, 722
MmeI	TCCRAC	1 cut(s)	624
MroNI	GCCGGC	1 cut(s)	320
MseI	TTAA	1 cut(s)	63
MspA1I	CMGCKG	1 cut(s)	686
MspI	CCGG	5 cut(s)	257, 321, 399, 516, 555
MspR9I	CCNGG	3 cut(s)	146, 258, 488
MvaI	CCWGG	2 cut(s)	146, 488
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	6 cut(s)	111, 213, 258, 330, 592, 683
NaeI	GCCGGC	1 cut(s)	322
NciI	CCSGG	1 cut(s)	258
NdeII	GATC	1 cut(s)	209
NgoMIV	GCCGGC	1 cut(s)	320
NlaIII	CATG	1 cut(s)	41
NlaIV	GGNNCC	7 cut(s)	157, 251, 262, 429, 514, 547, 718
NmuCI	GTSAC	5 cut(s)	92, 271, 470, 637, 647
NspI	RCATGY	1 cut(s)	41
PdiI	GCCGGC	1 cut(s)	322
PflMI	CCANNNNNTGG	1 cut(s)	579
PkrI	GCNGC	4 cut(s)	89, 169, 326, 679
Psp6I	CCWGG	2 cut(s)	144, 486
PspEI	GGTNACC	1 cut(s)	271
PspFI	CCCAGC	4 cut(s)	199, 342, 682, 686
PspGI	CCWGG	2 cut(s)	144, 486
PspN4I	GGNNCC	7 cut(s)	157, 251, 262, 429, 514, 547, 718
PspPI	GGNCC	4 cut(s)	169, 490, 546, 693
PstI	CTGCAG	1 cut(s)	437
PstNI	CAGNNNCTG	1 cut(s)	579
PsuI	RGATCY	1 cut(s)	209
PvuII	CAGCTG	1 cut(s)	686
RsaI	GTAC	4 cut(s)	128, 152, 429, 658
RsaNI	GTAC	4 cut(s)	127, 151, 428, 657
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	4 cut(s)	88, 168, 325, 678
Sau3AI	GATC	1 cut(s)	209
Sau96I	GGNCC	4 cut(s)	169, 490, 546, 693
ScrFI	CCNGG	3 cut(s)	146, 258, 488
SduI	GDGCHC	4 cut(s)	179, 263, 528, 721
SexAI	ACCWGGT	1 cut(s)	486
SfaNI	GCATC	1 cut(s)	459
SfcI	CTRYAG	4 cut(s)	139, 418, 433, 709
SinI	GGWCC	3 cut(s)	490, 546, 693
Sse9I	AATT	2 cut(s)	283, 722
SsiI	CCGC	8 cut(s)	87, 90, 114, 167, 207, 276, 324, 727
SspMI	CTAG	1 cut(s)	730
StyD4I	CCNGG	3 cut(s)	144, 256, 486
TaaI	ACNGT	3 cut(s)	470, 661, 713
TaqI	TCGA	1 cut(s)	354
TasI	AATT	2 cut(s)	283, 722
TauI	GCSGC	3 cut(s)	90, 170, 327
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	3 cut(s)	184, 652, 718
TseFI	GTSAC	5 cut(s)	92, 271, 470, 637, 647
TseI	GCWGC	1 cut(s)	677
Tsp45I	GTSAC	5 cut(s)	92, 271, 470, 637, 647
TspGWI	ACGGA	1 cut(s)	168
TspRI	CASTG	3 cut(s)	184, 652, 718
Van91I	CCANNNNNTGG	1 cut(s)	579
VneI	GTGCAC	1 cut(s)	524
VpaK11BI	GGWCC	3 cut(s)	490, 546, 693
XagI	CCTNNNNNAGG	1 cut(s)	421
XceI	RCATGY	1 cut(s)	41
XspI	CTAG	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.