Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003982

Physical Location & Seq

Genomic Coordinates Forward (+)

64181916 .. 64184546

Gene Structure 2631 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00271840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGTCGACGGTGCTTCTCTTGTTGGGGCTTCTTTCTCTAACCCCATTGTTTGCTCATGCTTATGGTGATGGAGGTTGGGTTGATGCTCATGCCACTTTTTATGGTGGGGGTGATGCCTCTGGTACTATGGGTGGGGCTTGTGGGTATGGAAACCTATACAGCCAAGGGTACGGCACAAACACAGCAGCTCTGAGCACAGCCTTGTTCAACAATGGCTTGAGCTGCAGGGCATGCTTTGAGATCAAGTGTGTCAATGACCCCAAATGGTGCCTTCCCGGTTCTATTTTGGTCACTGCCACCAATTTCTGCCCTCCAAACAATGCTCTCCCTAACAACAACGGCGGTTGGTGCAACCCTCCTCAGCATCATTTCGATCTCGCGCAGCCCGTCTTCCAGCATATTGCGCAATACATAGCTGGAATCGTCCCTGTCTCCTACCGAAGGGTACCTTGCCAAAAGAAGGGTGGGATCAGATTCACAATCAACGGTCACTCATACTTCAATCTGGTTCTAATCACAAACGTGGGTGGTGCTGGTGATGTTCAATCTGTTTCCATCAAAGGGTCAAGAACTGGTTGGCAACCCATGTCTAGGAACTGGGGTCAGAATTGGCAGAGCAACTCCAACCTAGACGGCCAAAGCCTCTCATTCAAGGTCACAACCAGTGATGGCCGCACTGTAGTATCTAACAATGTTGTTCCGGCAGGCTGGTCTTTCGGCCAGACTTTCTCCGGCCTCCAATTCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

249

Amino Acids

26.53

Weight (kDa)

8.64

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	61 - 146	5.8e-20	Lytic transglycolase
Expansin_C	PF01357	157 - 234	2.8e-34	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003982)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31140 FvH4_5g14760 FvH4_5g14760
malus_domestica	MD06G1195100.v1.1 MD13G1070200.v1.1 MD14G1202100.v1.1 MD16G1070600.v1.1
prunus_persica	Prupe.1G276700_v2.0.a1 Prupe.5G195200_v2.0.a1
pyrus_communis	pycom06g17260 pycom13g06300 pycom14g16740 pycom16g06140
rosa_chinensis	RchiOBHm_Chr4g0439541 RchiOBHm_Chr7g0181621
rosa_laevigata	RLG00000005178 RLG00000006260
rosa_multiflora	Rmu_sc0000988.1_g000016 Rmu_sc0007276.1_g000013
rosa_roxburghii	Rroxscaffold_3G00271840 Rroxscaffold_5G00380460
rosa_rugosa	Rorug04G0319400 Rorug06G0442600 Rorug06G0442600
rosa_samantha	Rh4AG370600 Rh4BG382400 Rh4CG397000 Rh7AG045000 Rh7BG044000 Rh7BG044100 Rh7CG045700
rosa_wichuraiana	Rw4G031590 Rw7G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	405
Acc65I	GGTACC	1 cut(s)	445
AccB1I	GGYRCC	2 cut(s)	267, 445
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	380
AciI	CCGC	2 cut(s)	342, 673
AclWI	GGATC	1 cut(s)	476
AcoI	YGGCCR	3 cut(s)	634, 670, 718
AfaI	GTAC	3 cut(s)	124, 170, 447
AfiI	CCNNNNNNNGG	4 cut(s)	441, 460, 561, 591
AgsI	TTSAA	4 cut(s)	208, 502, 545, 652
AleI	CACNNNNGTG	1 cut(s)	521
AluBI	AGCT	3 cut(s)	188, 222, 416
AluI	AGCT	3 cut(s)	188, 222, 416
Alw21I	GWGCWC	1 cut(s)	197
Alw26I	GTCTC	1 cut(s)	436
AlwI	GGATC	1 cut(s)	476
AoxI	GGCC	4 cut(s)	634, 670, 718, 733
ApeKI	GCWGC	3 cut(s)	185, 222, 382
Asp718I	GGTACC	1 cut(s)	445
AspLEI	GCGC	2 cut(s)	382, 406
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	3 cut(s)	77, 122, 548
BaeI	ACNNNNGTAYC	2 cut(s)	666, 699
BanI	GGYRCC	2 cut(s)	267, 445
BbsI	GAAGAC	1 cut(s)	382
Bbv12I	GWGCWC	1 cut(s)	197
BbvCI	CCTCAGC	1 cut(s)	360
BbvI	GCAGC	3 cut(s)	197, 209, 394
BccI	CCATC	3 cut(s)	62, 563, 662
BceAI	ACGGC	3 cut(s)	187, 355, 649
BcnI	CCSGG	1 cut(s)	276
BcoDI	GTCTC	1 cut(s)	436
BfaI	CTAG	2 cut(s)	591, 629
BfmI	CTRYAG	2 cut(s)	223, 678
BisI	GCNGC	4 cut(s)	186, 223, 383, 673
BlsI	GCNGC	4 cut(s)	187, 224, 384, 674
Bme1390I	CCNGG	1 cut(s)	276
BmiI	GGNNCC	2 cut(s)	269, 447
BmrFI	CCNGG	1 cut(s)	276
BmrI	ACTGGG	1 cut(s)	607
BmsI	GCATC	3 cut(s)	73, 103, 373
BmuI	ACTGGG	1 cut(s)	607
BpiI	GAAGAC	1 cut(s)	382
Bpu10I	CCTNAGC	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	238
BpuMI	CCSGG	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	163
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	4 cut(s)	441, 460, 561, 591
Bse1I	ACTGG	3 cut(s)	577, 602, 663
BseDI	CCNNGG	1 cut(s)	163
BseLI	CCNNNNNNNGG	4 cut(s)	441, 460, 561, 591
BseMII	CTCAG	2 cut(s)	182, 374
BseNI	ACTGG	3 cut(s)	577, 602, 663
BseRI	GAGGAG	1 cut(s)	348
BseXI	GCAGC	3 cut(s)	197, 209, 394
Bsh1236I	CGCG	1 cut(s)	380
BshFI	GGCC	4 cut(s)	636, 672, 720, 735
BshNI	GGYRCC	2 cut(s)	267, 445
BsiHKAI	GWGCWC	1 cut(s)	197
BsiSI	CCGG	3 cut(s)	276, 701, 732
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	4 cut(s)	441, 460, 561, 591
BsmAI	GTCTC	1 cut(s)	436
BsmFI	GGGAC	1 cut(s)	410
BsnI	GGCC	4 cut(s)	636, 672, 720, 735
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	3 cut(s)	240, 373, 468
BspACI	CCGC	2 cut(s)	342, 673
BspANI	GGCC	4 cut(s)	636, 672, 720, 735
BspCNI	CTCAG	2 cut(s)	183, 373
BspFNI	CGCG	1 cut(s)	380
BspLI	GGNNCC	2 cut(s)	269, 447
BspMAI	CTGCAG	1 cut(s)	227
BspPI	GGATC	1 cut(s)	476
BspT107I	GGYRCC	2 cut(s)	267, 445
BsrI	ACTGG	3 cut(s)	577, 602, 663
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	3 cut(s)	240, 373, 468
BssT1I	CCWWGG	1 cut(s)	163
Bst4CI	ACNGT	3 cut(s)	10, 488, 679
BstAPI	GCANNNNNTGC	1 cut(s)	231
BstC8I	GCNNGC	2 cut(s)	232, 706
BstDEI	CTNAG	2 cut(s)	191, 360
BstENI	CCTNNNNNAGG	1 cut(s)	439
BstFNI	CGCG	1 cut(s)	380
BstHHI	GCGC	2 cut(s)	382, 406
BstKTI	GATC	3 cut(s)	243, 376, 471
BstMAI	GTCTC	1 cut(s)	436
BstMBI	GATC	3 cut(s)	240, 373, 468
BstMWI	GCNNNNNNNGC	4 cut(s)	222, 231, 348, 403
BstNSI	RCATGY	1 cut(s)	234
BstSCI	CCNGG	1 cut(s)	274
BstSFI	CTRYAG	2 cut(s)	223, 678
BstUI	CGCG	1 cut(s)	380
BstV1I	GCAGC	3 cut(s)	197, 209, 394
BstV2I	GAAGAC	1 cut(s)	382
BsuRI	GGCC	4 cut(s)	636, 672, 720, 735
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	3 cut(s)	291, 670, 675
Cac8I	GCNNGC	2 cut(s)	232, 706
CfoI	GCGC	2 cut(s)	382, 406
Csp6I	GTAC	3 cut(s)	123, 169, 446
CviAII	CATG	4 cut(s)	56, 89, 231, 586
CviQI	GTAC	3 cut(s)	123, 169, 446
DdeI	CTNAG	2 cut(s)	191, 360
DpnI	GATC	3 cut(s)	242, 375, 470
DpnII	GATC	3 cut(s)	240, 373, 468
EaeI	YGGCCR	3 cut(s)	634, 670, 718
Eco130I	CCWWGG	1 cut(s)	163
EcoNI	CCTNNNNNAGG	1 cut(s)	439
EcoT14I	CCWWGG	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	4 cut(s)	59, 92, 234, 589
FalI	AAGNNNNNCTT	2 cut(s)	433, 465
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	4 cut(s)	55, 88, 230, 585
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	4 cut(s)	186, 223, 383, 673
Fsp4HI	GCNGC	4 cut(s)	186, 223, 383, 673
FspBI	CTAG	2 cut(s)	591, 629
FspI	TGCGCA	1 cut(s)	405
GlaI	GCGC	2 cut(s)	381, 405
GluI	GCNGC	4 cut(s)	186, 223, 383, 673
HaeIII	GGCC	4 cut(s)	636, 672, 720, 735
HapII	CCGG	3 cut(s)	276, 701, 732
HhaI	GCGC	2 cut(s)	382, 406
Hin1II	CATG	4 cut(s)	59, 92, 234, 589
Hin6I	GCGC	2 cut(s)	380, 404
HinP1I	GCGC	2 cut(s)	380, 404
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	420, 474
HpaII	CCGG	3 cut(s)	276, 701, 732
HphI	GGTGA	3 cut(s)	77, 122, 548
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	3 cut(s)	192, 473, 606
Hpy188III	TCNNGA	1 cut(s)	567
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	281, 435, 454
HpyCH4III	ACNGT	3 cut(s)	10, 488, 679
HpyCH4IV	ACGT	1 cut(s)	522
HpyCH4V	TGCA	2 cut(s)	225, 351
HpyF10VI	GCNNNNNNNGC	4 cut(s)	222, 231, 348, 403
HpyF3I	CTNAG	2 cut(s)	191, 360
HpySE526I	ACGT	1 cut(s)	522
Hsp92II	CATG	4 cut(s)	59, 92, 234, 589
HspAI	GCGC	2 cut(s)	380, 404
KpnI	GGTACC	1 cut(s)	449
Kzo9I	GATC	3 cut(s)	240, 373, 468
Lsp1109I	GCAGC	3 cut(s)	197, 209, 394
LweI	GCATC	3 cut(s)	73, 103, 373
MaeI	CTAG	2 cut(s)	591, 629
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	3 cut(s)	289, 488, 655
MalI	GATC	3 cut(s)	242, 375, 470
MboI	GATC	3 cut(s)	240, 373, 468
MboII	GAAGA	1 cut(s)	382
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	3 cut(s)	301, 607, 740
MmeI	TCCRAC	1 cut(s)	648
MnlI	CCTC	7 cut(s)	65, 127, 321, 366, 369, 653, 746
MseI	TTAA	1 cut(s)	748
MslI	CAYNNNNRTG	2 cut(s)	60, 521
MspI	CCGG	3 cut(s)	276, 701, 732
MspR9I	CCNGG	1 cut(s)	276
MvnI	CGCG	1 cut(s)	380
MwoI	GCNNNNNNNGC	4 cut(s)	222, 231, 348, 403
NciI	CCSGG	1 cut(s)	276
NdeII	GATC	3 cut(s)	240, 373, 468
NlaIII	CATG	4 cut(s)	59, 92, 234, 589
NlaIV	GGNNCC	2 cut(s)	269, 447
NmuCI	GTSAC	3 cut(s)	289, 488, 655
NsbI	TGCGCA	1 cut(s)	405
NspI	RCATGY	1 cut(s)	234
OliI	CACNNNNGTG	1 cut(s)	521
PaeI	GCATGC	1 cut(s)	234
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PfeI	GAWTC	2 cut(s)	420, 474
PkrI	GCNGC	4 cut(s)	187, 224, 384, 674
PspN4I	GGNNCC	2 cut(s)	269, 447
PstI	CTGCAG	1 cut(s)	227
RsaI	GTAC	3 cut(s)	124, 170, 447
RsaNI	GTAC	3 cut(s)	123, 169, 446
RseI	CAYNNNNRTG	2 cut(s)	60, 521
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	748
SatI	GCNGC	4 cut(s)	186, 223, 383, 673
Sau3AI	GATC	3 cut(s)	240, 373, 468
ScrFI	CCNGG	1 cut(s)	276
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	9 cut(s)	76, 156, 190, 224, 418, 451, 525, 630, 657
SfaNI	GCATC	3 cut(s)	73, 103, 373
SfcI	CTRYAG	2 cut(s)	223, 678
SmiMI	CAYNNNNRTG	2 cut(s)	60, 521
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
SphI	GCATGC	1 cut(s)	234
Sse9I	AATT	3 cut(s)	301, 607, 740
SsiI	CCGC	2 cut(s)	342, 673
SspMI	CTAG	2 cut(s)	591, 629
StyD4I	CCNGG	1 cut(s)	274
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	3 cut(s)	10, 488, 679
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	2 cut(s)	5, 372
TasI	AATT	3 cut(s)	301, 607, 740
TauI	GCSGC	1 cut(s)	675
TfiI	GAWTC	2 cut(s)	420, 474
Tru1I	TTAA	1 cut(s)	748
Tru9I	TTAA	1 cut(s)	748
TscAI	CASTG	3 cut(s)	298, 670, 682
TseFI	GTSAC	3 cut(s)	289, 488, 655
TseI	GCWGC	3 cut(s)	185, 222, 382
Tsp45I	GTSAC	3 cut(s)	289, 488, 655
TspRI	CASTG	3 cut(s)	298, 670, 682
XagI	CCTNNNNNAGG	1 cut(s)	439
XceI	RCATGY	1 cut(s)	234
XcmI	CCANNNNNNNNNTGG	1 cut(s)	461
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	2 cut(s)	591, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.