Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003982

Physical Location & Seq

Genomic Coordinates Reverse (-)

2770368 .. 2770871

Gene Structure 504 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG044100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTTCAAACTAATATTTGCAGGTGGGGCTTGTGGGTATGGAAACCTATACAGCCAAGGGTACGGCACAAACACTGCAGCTCTGAGCACAGCCTTGTTCAACAATGGCTTGAGCTGCGGGGCTTGCTTTGAGATCAAGTGTGTCAATGACCCCAAATGGTGCCTTCCCGGTTCTATTTTGGTCACTGCCACCAATTTCTGCCCTCCAAACAATGCTCTCCCTAACAACAACGGCGGTTGGTGCAACCCTCCTCAGCATCATTTCGATCTCGCGCAGCCCGTCTTCCAGCATATTGCGCAATACAGAGCTGGAATCGTCCCTGTCTCCTACCAAAGGTATGCAATTTGGACTCCTTTAAACCCGACCAAAATGTTTATGCACCTTAGAGTTGTGACAACGGATATTATATATTTGTTAAAAAAGCCTCAACTGTGTCTTAATCGTTTGATCCGAGAATTATACATATTGCGTTATAGATATTCTCCTATCTCGCAATTAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

167

Amino Acids

18.78

Weight (kDa)

9.28

Isoelectric Point (pI)

34.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	9 - 93	4.2e-06	EXPB1-like domain 1
DPBB_1	PF03330	25 - 110	8.8e-23	Lytic transglycolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003982)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31140 FvH4_5g14760 FvH4_5g14760
malus_domestica	MD06G1195100.v1.1 MD13G1070200.v1.1 MD14G1202100.v1.1 MD16G1070600.v1.1
prunus_persica	Prupe.1G276700_v2.0.a1 Prupe.5G195200_v2.0.a1
pyrus_communis	pycom06g17260 pycom13g06300 pycom14g16740 pycom16g06140
rosa_chinensis	RchiOBHm_Chr4g0439541 RchiOBHm_Chr7g0181621
rosa_laevigata	RLG00000005178 RLG00000006260
rosa_multiflora	Rmu_sc0000988.1_g000016 Rmu_sc0007276.1_g000013
rosa_roxburghii	Rroxscaffold_3G00271840 Rroxscaffold_5G00380460
rosa_rugosa	Rorug04G0319400 Rorug06G0442600 Rorug06G0442600
rosa_samantha	Rh4AG370600 Rh4BG382400 Rh4CG397000 Rh7AG045000 Rh7BG044000 Rh7BG044100 Rh7CG045700
rosa_wichuraiana	Rw4G031590 Rw7G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	11
Acc16I	TGCGCA	1 cut(s)	297
Acc36I	ACCTGC	1 cut(s)	11
AccB1I	GGYRCC	1 cut(s)	159
AccII	CGCG	1 cut(s)	272
AciI	CCGC	2 cut(s)	117, 234
AclWI	GGATC	1 cut(s)	442
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	1 cut(s)	333
AgsI	TTSAA	2 cut(s)	7, 100
AluBI	AGCT	3 cut(s)	80, 114, 308
AluI	AGCT	3 cut(s)	80, 114, 308
Alw21I	GWGCWC	1 cut(s)	89
Alw26I	GTCTC	1 cut(s)	328
AlwI	GGATC	1 cut(s)	442
ApeKI	GCWGC	3 cut(s)	77, 114, 274
AspLEI	GCGC	2 cut(s)	274, 298
AsuC2I	CCSGG	1 cut(s)	168
BanI	GGYRCC	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	274
Bbv12I	GWGCWC	1 cut(s)	89
BbvCI	CCTCAGC	1 cut(s)	252
BbvI	GCAGC	3 cut(s)	89, 101, 286
BceAI	ACGGC	2 cut(s)	79, 247
BcnI	CCSGG	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	328
BfmI	CTRYAG	1 cut(s)	75
BfuAI	ACCTGC	1 cut(s)	11
BisI	GCNGC	3 cut(s)	78, 115, 275
BlsI	GCNGC	3 cut(s)	79, 116, 276
Bme1390I	CCNGG	1 cut(s)	168
BmiI	GGNNCC	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	168
BmsI	GCATC	1 cut(s)	265
BpiI	GAAGAC	1 cut(s)	274
Bpu10I	CCTNAGC	1 cut(s)	252
BpuEI	CTTGAG	1 cut(s)	130
BpuMI	CCSGG	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	333
BseMII	CTCAG	2 cut(s)	74, 266
BseRI	GAGGAG	1 cut(s)	240
BseXI	GCAGC	3 cut(s)	89, 101, 286
Bsh1236I	CGCG	1 cut(s)	272
BshNI	GGYRCC	1 cut(s)	159
BsiHKAI	GWGCWC	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	168
BslFI	GGGAC	1 cut(s)	302
BslI	CCNNNNNNNGG	1 cut(s)	333
BsmAI	GTCTC	1 cut(s)	328
BsmFI	GGGAC	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	89
Bsp143I	GATC	3 cut(s)	132, 265, 447
BspACI	CCGC	2 cut(s)	117, 234
BspCNI	CTCAG	2 cut(s)	75, 265
BspFNI	CGCG	1 cut(s)	272
BspLI	GGNNCC	1 cut(s)	161
BspMAI	CTGCAG	1 cut(s)	79
BspMI	ACCTGC	1 cut(s)	11
BspPI	GGATC	1 cut(s)	442
BspT107I	GGYRCC	1 cut(s)	159
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	3 cut(s)	132, 265, 447
BssT1I	CCWWGG	1 cut(s)	55
Bst4CI	ACNGT	1 cut(s)	432
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	3 cut(s)	83, 252, 383
BstENI	CCTNNNNNAGG	1 cut(s)	331
BstFNI	CGCG	1 cut(s)	272
BstHHI	GCGC	2 cut(s)	274, 298
BstKTI	GATC	3 cut(s)	135, 268, 450
BstMAI	GTCTC	1 cut(s)	328
BstMBI	GATC	3 cut(s)	132, 265, 447
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 114, 123, 240, 295
BstSCI	CCNGG	1 cut(s)	166
BstSFI	CTRYAG	1 cut(s)	75
BstUI	CGCG	1 cut(s)	272
BstV1I	GCAGC	3 cut(s)	89, 101, 286
BstV2I	GAAGAC	1 cut(s)	274
BtsI	GCAGTG	2 cut(s)	72, 183
BtsIMutI	CAGTG	2 cut(s)	72, 183
BveI	ACCTGC	1 cut(s)	11
Cac8I	GCNNGC	1 cut(s)	124
CfoI	GCGC	2 cut(s)	274, 298
Csp6I	GTAC	1 cut(s)	61
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	3 cut(s)	83, 252, 383
DpnI	GATC	3 cut(s)	134, 267, 449
DpnII	GATC	3 cut(s)	132, 265, 447
DraI	TTTAAA	1 cut(s)	357
Eco130I	CCWWGG	1 cut(s)	55
EcoNI	CCTNNNNNAGG	1 cut(s)	331
EcoT14I	CCWWGG	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	55
FaqI	GGGAC	1 cut(s)	302
FauI	CCCGC	1 cut(s)	110
Fnu4HI	GCNGC	3 cut(s)	78, 115, 275
Fsp4HI	GCNGC	3 cut(s)	78, 115, 275
FspI	TGCGCA	1 cut(s)	297
GlaI	GCGC	2 cut(s)	273, 297
GluI	GCNGC	3 cut(s)	78, 115, 275
HapII	CCGG	1 cut(s)	168
HhaI	GCGC	2 cut(s)	274, 298
Hin6I	GCGC	2 cut(s)	272, 296
HinP1I	GCGC	2 cut(s)	272, 296
HinfI	GANTC	2 cut(s)	312, 349
HpaII	CCGG	1 cut(s)	168
Hpy188I	TCNGA	2 cut(s)	84, 452
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	1 cut(s)	432
HpyCH4V	TGCA	5 cut(s)	20, 77, 243, 341, 379
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 114, 123, 240, 295
HpyF3I	CTNAG	3 cut(s)	83, 252, 383
HspAI	GCGC	2 cut(s)	272, 296
Kzo9I	GATC	3 cut(s)	132, 265, 447
LpnPI	CCDG	5 cut(s)	6, 181, 294, 299, 333
Lsp1109I	GCAGC	3 cut(s)	89, 101, 286
LweI	GCATC	1 cut(s)	265
MaeIII	GTNAC	2 cut(s)	181, 391
MalI	GATC	3 cut(s)	134, 267, 449
MboI	GATC	3 cut(s)	132, 265, 447
MboII	GAAGA	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	89
MluCI	AATT	4 cut(s)	193, 342, 455, 494
MlyI	GAGTC	1 cut(s)	343
MnlI	CCTC	4 cut(s)	213, 258, 261, 435
MseI	TTAA	4 cut(s)	356, 416, 438, 497
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	168
MvnI	CGCG	1 cut(s)	272
MwoI	GCNNNNNNNGC	5 cut(s)	26, 114, 123, 240, 295
NciI	CCSGG	1 cut(s)	168
NdeII	GATC	3 cut(s)	132, 265, 447
NlaIV	GGNNCC	1 cut(s)	161
NmuCI	GTSAC	2 cut(s)	181, 391
NsbI	TGCGCA	1 cut(s)	297
PaqCI	CACCTGC	1 cut(s)	11
PcsI	WCGNNNNNNNCGW	2 cut(s)	276, 448
PfeI	GAWTC	1 cut(s)	312
PkrI	GCNGC	3 cut(s)	79, 116, 276
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
PspN4I	GGNNCC	1 cut(s)	161
PstI	CTGCAG	1 cut(s)	79
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SaqAI	TTAA	4 cut(s)	356, 416, 438, 497
SatI	GCNGC	3 cut(s)	78, 115, 275
Sau3AI	GATC	3 cut(s)	132, 265, 447
SchI	GAGTC	1 cut(s)	343
ScrFI	CCNGG	1 cut(s)	168
SduI	GDGCHC	1 cut(s)	89
SetI	ASST	7 cut(s)	25, 48, 82, 116, 310, 338, 384
SfaNI	GCATC	1 cut(s)	265
SfcI	CTRYAG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
Sse9I	AATT	4 cut(s)	193, 342, 455, 494
SsiI	CCGC	2 cut(s)	117, 234
SspI	AATATT	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	166
StyI	CCWWGG	1 cut(s)	55
TaaI	ACNGT	1 cut(s)	432
TaqI	TCGA	1 cut(s)	264
TasI	AATT	4 cut(s)	193, 342, 455, 494
TfiI	GAWTC	1 cut(s)	312
Tru1I	TTAA	4 cut(s)	356, 416, 438, 497
Tru9I	TTAA	4 cut(s)	356, 416, 438, 497
TscAI	CASTG	2 cut(s)	79, 190
TseFI	GTSAC	2 cut(s)	181, 391
TseI	GCWGC	3 cut(s)	77, 114, 274
Tsp45I	GTSAC	2 cut(s)	181, 391
TspGWI	ACGGA	1 cut(s)	413
TspRI	CASTG	2 cut(s)	79, 190
XagI	CCTNNNNNAGG	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.