Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003982

Physical Location & Seq

Genomic Coordinates Forward (+)

61958518 .. 61960329

Gene Structure 1812 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40759

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGTTTCTAAACAGTCCTATAAGCCCCCTCCCAAATTTCTATATAACCCCCAGCTCCCTCCCACATTCCTCACACCACTGCCTCACATTTTCTCTGCCCTTTATTCTCTTTGGAGTCTCATCATCCATCCTATAATGAAAATGGCTTCTGCTGTGTTTTTCTTGGTGGGTCTTCTTGCAATGGTGACATGTGCGCATGCTTATGGTGGTGGTGGTTGGGTTAACGCTCGTGCCACTTTCTATGGAGGTGGTGATGCTTCTGGAACAATGGGTGGTGCTTGTGGCTATGGAAACCTCTACAGCCAGGGGTATGGTACAAACACTGCTGCTCTGAGCACTGCTCTGTTCAACAATGGGCTGGGATGTGGGTCTTGCTATGAAATTAGGTGTGTGAATGACCCAAAATGGTGCCTTCCTGGCTCCATTGTGGTCACAGCCACTAATTTCTGCCCTCCAAACAATGCCCTACCTAACAATGCTGGGGGTTGGTGCAACCCTCCTCAGCATCACTTTGACCTCTCTCAACCTGTATTCCAGCACATTGCTCAATACAAAGCTGGAGTTGTCCCTGTTTCTTACAGAAGGGTACCCTGCAGCAGAAGGGGAGGCATCAGATTCACCATCAATGGCCACTCCTACTTCAACCTGGTTTTGATCACAAACGTTGGTGGTGCTGGTGATGTGCACTCTGTTTCAGTCAAAGGGTCCAGAACCGGTTGGCAACCAATGTCCAGAAACTGGGGGCAAAACTGGCAAAGCAACTCATATCTGAATGGGCAAGCCCTATCCTTCAAGGTCACAACCAGTGATGGCCGCACTGTGGTGTCCTACAATGCTGCCCCAGCTCGTTGGTCCTTTGGCCAGACCTTCAGTGGTGCCCAGTTCCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

296

Amino Acids

31.94

Weight (kDa)

9.56

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	78 - 200	1.4e-09	EXPB1-like domain 1
DPBB_1	PF03330	108 - 193	1.3e-23	Lytic transglycolase
Expansin_C	PF01357	204 - 281	1.4e-33	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003982)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31140 FvH4_5g14760 FvH4_5g14760
malus_domestica	MD06G1195100.v1.1 MD13G1070200.v1.1 MD14G1202100.v1.1 MD16G1070600.v1.1
prunus_persica	Prupe.1G276700_v2.0.a1 Prupe.5G195200_v2.0.a1
pyrus_communis	pycom06g17260 pycom13g06300 pycom14g16740 pycom16g06140
rosa_chinensis	RchiOBHm_Chr4g0439541 RchiOBHm_Chr7g0181621
rosa_laevigata	RLG00000005178 RLG00000006260
rosa_multiflora	Rmu_sc0000988.1_g000016 Rmu_sc0007276.1_g000013
rosa_roxburghii	Rroxscaffold_3G00271840 Rroxscaffold_5G00380460
rosa_rugosa	Rorug04G0319400 Rorug06G0442600 Rorug06G0442600
rosa_samantha	Rh4AG370600 Rh4BG382400 Rh4CG397000 Rh7AG045000 Rh7BG044000 Rh7BG044100 Rh7CG045700
rosa_wichuraiana	Rw4G031590 Rw7G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	195
Acc65I	GGTACC	1 cut(s)	586
AccB1I	GGYRCC	3 cut(s)	408, 586, 875
AccB7I	CCANNNNNTGG	1 cut(s)	738
AciI	CCGC	2 cut(s)	814, 886
AclI	AACGTT	1 cut(s)	663
AcoI	YGGCCR	3 cut(s)	628, 811, 859
AcsI	RAATTY	1 cut(s)	35
AcuI	CTGAAG	1 cut(s)	853
AfaI	GTAC	2 cut(s)	316, 588
AfiI	CCNNNNNNNGG	2 cut(s)	738, 820
AflIII	ACRYGT	1 cut(s)	188
AgeI	ACCGGT	1 cut(s)	713
AgsI	TTSAA	3 cut(s)	349, 643, 793
AjnI	CCWGG	3 cut(s)	303, 415, 645
AleI	CACNNNNGTG	1 cut(s)	821
AluBI	AGCT	3 cut(s)	55, 557, 845
AluI	AGCT	3 cut(s)	55, 557, 845
Alw21I	GWGCWC	2 cut(s)	338, 687
Alw26I	GTCTC	1 cut(s)	122
Alw44I	GTGCAC	1 cut(s)	683
AlwNI	CAGNNNCTG	1 cut(s)	738
AoxI	GGCC	3 cut(s)	628, 811, 859
ApaLI	GTGCAC	1 cut(s)	683
ApeKI	GCWGC	3 cut(s)	326, 594, 836
ApoI	RAATTY	1 cut(s)	35
AsiGI	ACCGGT	1 cut(s)	713
Asp718I	GGTACC	1 cut(s)	586
AspLEI	GCGC	1 cut(s)	196
AspS9I	GGNCC	2 cut(s)	705, 852
AsuHPI	GGTGA	4 cut(s)	196, 263, 610, 689
AvaII	GGWCC	2 cut(s)	705, 852
BaeGI	GKGCMC	2 cut(s)	687, 880
BalI	TGGCCA	2 cut(s)	630, 861
BanI	GGYRCC	3 cut(s)	408, 586, 875
BauI	CACGAG	1 cut(s)	228
BbsI	GAAGAC	1 cut(s)	164
Bbv12I	GWGCWC	2 cut(s)	338, 687
BbvCI	CCTCAGC	1 cut(s)	501
BbvI	GCAGC	3 cut(s)	313, 606, 823
BccI	CCATC	3 cut(s)	135, 629, 803
BciT130I	CCWGG	3 cut(s)	305, 417, 647
BclI	TGATCA	1 cut(s)	654
BcoDI	GTCTC	1 cut(s)	122
BfmI	CTRYAG	2 cut(s)	298, 592
BglI	GCCNNNNNGGC	1 cut(s)	417
BisI	GCNGC	4 cut(s)	327, 595, 814, 837
BlsI	GCNGC	4 cut(s)	328, 596, 815, 838
Bme1390I	CCNGG	3 cut(s)	305, 417, 647
Bme18I	GGWCC	2 cut(s)	705, 852
BmgT120I	GGNCC	2 cut(s)	705, 852
BmiI	GGNNCC	5 cut(s)	410, 421, 588, 706, 877
BmrFI	CCNGG	3 cut(s)	305, 417, 647
BmrI	ACTGGG	2 cut(s)	748, 874
BmsI	GCATC	3 cut(s)	244, 514, 618
BmuI	ACTGGG	2 cut(s)	748, 874
BpiI	GAAGAC	1 cut(s)	164
BplI	GAGNNNNNCTC	2 cut(s)	325, 357
BpmI	CTGGAG	1 cut(s)	579
Bpu10I	CCTNAGC	1 cut(s)	501
BsaJI	CCNNGG	1 cut(s)	304
BsaWI	WCCGGW	1 cut(s)	713
Bsc4I	CCNNNNNNNGG	2 cut(s)	738, 820
Bse118I	RCCGGY	1 cut(s)	713
Bse1I	ACTGG	4 cut(s)	743, 755, 804, 880
Bse3DI	GCAATG	2 cut(s)	186, 540
BseBI	CCWGG	3 cut(s)	305, 417, 647
BseDI	CCNNGG	1 cut(s)	304
BseGI	GGATG	3 cut(s)	123, 127, 368
BseLI	CCNNNNNNNGG	2 cut(s)	738, 820
BseMI	GCAATG	2 cut(s)	186, 540
BseMII	CTCAG	2 cut(s)	323, 515
BseNI	ACTGG	4 cut(s)	743, 755, 804, 880
BseRI	GAGGAG	1 cut(s)	489
BseSI	GKGCMC	2 cut(s)	687, 880
BseXI	GCAGC	3 cut(s)	313, 606, 823
BseYI	CCCAGC	4 cut(s)	51, 358, 479, 841
BshFI	GGCC	3 cut(s)	630, 813, 861
BshNI	GGYRCC	3 cut(s)	408, 586, 875
BshTI	ACCGGT	1 cut(s)	713
BsiHKAI	GWGCWC	2 cut(s)	338, 687
BsiSI	CCGG	1 cut(s)	714
BslFI	GGGAC	1 cut(s)	551
BslI	CCNNNNNNNGG	2 cut(s)	738, 820
BsmAI	GTCTC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	551
BsnI	GGCC	3 cut(s)	630, 813, 861
Bsp1286I	GDGCHC	3 cut(s)	338, 687, 880
Bsp143I	GATC	1 cut(s)	654
BspACI	CCGC	2 cut(s)	814, 886
BspANI	GGCC	3 cut(s)	630, 813, 861
BspCNI	CTCAG	2 cut(s)	324, 514
BspLI	GGNNCC	5 cut(s)	410, 421, 588, 706, 877
BspMAI	CTGCAG	1 cut(s)	596
BspT107I	GGYRCC	3 cut(s)	408, 586, 875
BsrDI	GCAATG	2 cut(s)	186, 540
BsrFI	RCCGGY	1 cut(s)	713
BsrI	ACTGG	4 cut(s)	743, 755, 804, 880
BssAI	RCCGGY	1 cut(s)	713
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	1 cut(s)	654
BssSI	CACGAG	1 cut(s)	228
Bst2BI	CACGAG	1 cut(s)	228
Bst2UI	CCWGG	3 cut(s)	305, 417, 647
Bst4CI	ACNGT	2 cut(s)	15, 820
BstC8I	GCNNGC	2 cut(s)	198, 780
BstDEI	CTNAG	2 cut(s)	332, 501
BstF5I	GGATG	3 cut(s)	123, 127, 368
BstHHI	GCGC	1 cut(s)	196
BstKTI	GATC	1 cut(s)	657
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	1 cut(s)	654
BstMWI	GCNNNNNNNGC	3 cut(s)	417, 751, 842
BstNI	CCWGG	3 cut(s)	305, 417, 647
BstNSI	RCATGY	2 cut(s)	192, 200
BstSCI	CCNGG	3 cut(s)	303, 415, 645
BstSFI	CTRYAG	2 cut(s)	298, 592
BstSLI	GKGCMC	2 cut(s)	687, 880
BstV1I	GCAGC	3 cut(s)	313, 606, 823
BstV2I	GAAGAC	1 cut(s)	164
BstXI	CCANNNNNNTGG	2 cut(s)	311, 849
BsuRI	GGCC	3 cut(s)	630, 813, 861
BtsCI	GGATG	3 cut(s)	123, 127, 368
BtsI	GCAGTG	3 cut(s)	77, 321, 336
BtsIMutI	CAGTG	6 cut(s)	77, 321, 336, 811, 816, 877
Cac8I	GCNNGC	2 cut(s)	198, 780
CaiI	CAGNNNCTG	1 cut(s)	738
CfoI	GCGC	1 cut(s)	196
Cfr10I	RCCGGY	1 cut(s)	713
Cfr13I	GGNCC	2 cut(s)	705, 852
CsiI	ACCWGGT	1 cut(s)	645
Csp6I	GTAC	2 cut(s)	315, 587
CspAI	ACCGGT	1 cut(s)	713
CviAII	CATG	2 cut(s)	189, 197
CviQI	GTAC	2 cut(s)	315, 587
DdeI	CTNAG	2 cut(s)	332, 501
DpnI	GATC	1 cut(s)	656
DpnII	GATC	1 cut(s)	654
EaeI	YGGCCR	3 cut(s)	628, 811, 859
Eco47I	GGWCC	2 cut(s)	705, 852
Eco57I	CTGAAG	1 cut(s)	853
EcoRII	CCWGG	3 cut(s)	303, 415, 645
FaeI	CATG	2 cut(s)	192, 200
FaqI	GGGAC	1 cut(s)	551
FatI	CATG	2 cut(s)	188, 196
FbaI	TGATCA	1 cut(s)	654
Fnu4HI	GCNGC	4 cut(s)	327, 595, 814, 837
FokI	GGATG	3 cut(s)	110, 114, 375
Fsp4HI	GCNGC	4 cut(s)	327, 595, 814, 837
FspAI	RTGCGCAY	1 cut(s)	195
FspI	TGCGCA	1 cut(s)	195
GlaI	GCGC	1 cut(s)	195
GluI	GCNGC	4 cut(s)	327, 595, 814, 837
GsaI	CCCAGC	4 cut(s)	55, 362, 483, 845
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	3 cut(s)	630, 813, 861
HapII	CCGG	1 cut(s)	714
HhaI	GCGC	1 cut(s)	196
Hin1II	CATG	2 cut(s)	192, 200
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	2 cut(s)	115, 615
HpaI	GTTAAC	1 cut(s)	223
HpaII	CCGG	1 cut(s)	714
HphI	GGTGA	4 cut(s)	196, 263, 610, 689
Hpy166II	GTNNAC	2 cut(s)	223, 685
Hpy188I	TCNGA	3 cut(s)	333, 614, 771
Hpy188III	TCNNGA	3 cut(s)	261, 708, 732
Hpy8I	GTNNAC	2 cut(s)	223, 685
HpyAV	CCTTC	5 cut(s)	422, 576, 594, 799, 877
HpyCH4III	ACNGT	2 cut(s)	15, 820
HpyCH4IV	ACGT	1 cut(s)	663
HpyCH4V	TGCA	4 cut(s)	179, 492, 594, 685
HpyF10VI	GCNNNNNNNGC	3 cut(s)	417, 751, 842
HpyF3I	CTNAG	2 cut(s)	332, 501
HpySE526I	ACGT	1 cut(s)	663
Hsp92II	CATG	2 cut(s)	192, 200
HspAI	GCGC	1 cut(s)	194
KpnI	GGTACC	1 cut(s)	590
Ksp22I	TGATCA	1 cut(s)	654
KspAI	GTTAAC	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	654
LmnI	GCTCC	2 cut(s)	60, 425
Lsp1109I	GCAGC	3 cut(s)	313, 606, 823
LweI	GCATC	3 cut(s)	244, 514, 618
MabI	ACCWGGT	1 cut(s)	645
MaeII	ACGT	1 cut(s)	663
MaeIII	GTNAC	3 cut(s)	184, 430, 796
MalI	GATC	1 cut(s)	656
MboI	GATC	1 cut(s)	654
MboII	GAAGA	1 cut(s)	164
MhlI	GDGCHC	3 cut(s)	338, 687, 880
MlsI	TGGCCA	2 cut(s)	630, 861
MluCI	AATT	3 cut(s)	35, 381, 442
MluNI	TGGCCA	2 cut(s)	630, 861
MlyI	GAGTC	1 cut(s)	124
Mox20I	TGGCCA	2 cut(s)	630, 861
MscI	TGGCCA	2 cut(s)	630, 861
MseI	TTAA	1 cut(s)	222
MslI	CAYNNNNRTG	2 cut(s)	201, 821
Msp20I	TGGCCA	2 cut(s)	630, 861
MspI	CCGG	1 cut(s)	714
MspR9I	CCNGG	3 cut(s)	305, 417, 647
MvaI	CCWGG	3 cut(s)	305, 417, 647
MwoI	GCNNNNNNNGC	3 cut(s)	417, 751, 842
NdeII	GATC	1 cut(s)	654
NlaIII	CATG	2 cut(s)	192, 200
NlaIV	GGNNCC	5 cut(s)	410, 421, 588, 706, 877
NmuCI	GTSAC	3 cut(s)	184, 430, 796
NsbI	TGCGCA	1 cut(s)	195
NspI	RCATGY	2 cut(s)	192, 200
OliI	CACNNNNGTG	1 cut(s)	821
PaeI	GCATGC	1 cut(s)	200
PciI	ACATGT	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	615
PflMI	CCANNNNNTGG	1 cut(s)	738
PinAI	ACCGGT	1 cut(s)	713
PkrI	GCNGC	4 cut(s)	328, 596, 815, 838
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
PscI	ACATGT	1 cut(s)	188
Psp1406I	AACGTT	1 cut(s)	663
Psp6I	CCWGG	3 cut(s)	303, 415, 645
PspFI	CCCAGC	4 cut(s)	51, 358, 479, 841
PspGI	CCWGG	3 cut(s)	303, 415, 645
PspN4I	GGNNCC	5 cut(s)	410, 421, 588, 706, 877
PspPI	GGNCC	2 cut(s)	705, 852
PstI	CTGCAG	1 cut(s)	596
PstNI	CAGNNNCTG	1 cut(s)	738
RsaI	GTAC	2 cut(s)	316, 588
RsaNI	GTAC	2 cut(s)	315, 587
RseI	CAYNNNNRTG	2 cut(s)	201, 821
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	4 cut(s)	327, 595, 814, 837
Sau3AI	GATC	1 cut(s)	654
Sau96I	GGNCC	2 cut(s)	705, 852
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	3 cut(s)	305, 417, 647
SduI	GDGCHC	3 cut(s)	338, 687, 880
SexAI	ACCWGGT	1 cut(s)	645
SfaNI	GCATC	3 cut(s)	244, 514, 618
SfcI	CTRYAG	2 cut(s)	298, 592
SinI	GGWCC	2 cut(s)	705, 852
SmiMI	CAYNNNNRTG	2 cut(s)	201, 821
SphI	GCATGC	1 cut(s)	200
Sse9I	AATT	3 cut(s)	35, 381, 442
SsiI	CCGC	2 cut(s)	814, 886
StyD4I	CCNGG	3 cut(s)	303, 415, 645
TaaI	ACNGT	2 cut(s)	15, 820
TaiI	ACGT	1 cut(s)	666
TasI	AATT	3 cut(s)	35, 381, 442
TauI	GCSGC	1 cut(s)	816
TfiI	GAWTC	1 cut(s)	615
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	6 cut(s)	84, 328, 343, 811, 823, 877
TseFI	GTSAC	3 cut(s)	184, 430, 796
TseI	GCWGC	3 cut(s)	326, 594, 836
Tsp45I	GTSAC	3 cut(s)	184, 430, 796
TspDTI	ATGAA	2 cut(s)	152, 393
TspRI	CASTG	6 cut(s)	84, 328, 343, 811, 823, 877
Van91I	CCANNNNNTGG	1 cut(s)	738
VneI	GTGCAC	1 cut(s)	683
VpaK11BI	GGWCC	2 cut(s)	705, 852
XapI	RAATTY	1 cut(s)	35
XceI	RCATGY	2 cut(s)	192, 200
XcmI	CCANNNNNNNNNTGG	1 cut(s)	869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.