Rh7AG045000

Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0003982
Physical Location & Seq
Reverse (-)
3031122 .. 3033745
2624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG045000.1

Sequence Viewer

Length: 762 bp
ATGCAGGACAAAATGTCGACGGTGCTTCTCTTGTTGGGGCTTCTTTCTCTGACCCCATTGTTTGCTCATGCTTATGGTGATGGAGGTTGGGTTGATGCTCATGCCACTTTTTATGGTGGGGGTGATGCCTCTGGTACTATGGGTGGGGCTTGTGGGTATGGAAACCTATACAGCCAAGGGTACGGCACAAACACAGCAGCTCTGAGCACAGCCTTGTTCAACAATGGCTTGAGCTGCGGGGCTTGCTTTGAGATCAAGTGTGTCAATGACCCCAAATGGTGCCTTCCCGGTTCTATTTTGGTCACTGCCACCAATTTCTGCCCTCCAAACAATGCTCTCCCTAACAACAACGGCGGTTGGTGCAACCCTCCTCAGCATCATTTCGATCTCGCGCAGCCCGTCTTCCAGCATATTGCGCAATACAGAGCTGGAATCGTCCCTGTCTCCTACCGAAGGGTACCTTGCCAAAAGAAGGGTGGGATCAGATTCACAATCAACGGTCACTCATACTTCAATCTGGTCCTAATCACAAACGTGGCTGGTGCTGGTGATGTTCAATCTGTTTCCATCAAAGGGTCAAGAACTGGTTGGCAACCCATGTCTAGGAACTGGGGTCAGAATTGGCAGAGCAACTCCAACCTCGACGGCCAAAGCCTTTCATTCAAGGTCACAACCAGTGATGGCCGCACTGTAGTCTCTAACAATGTTGTTCCGGCAGGCTGGTCTTTCGGCCAGACTTTCTCCGGCCTCCAATTCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

253

Amino Acids

26.99

Weight (kDa)

8.64

Isoelectric Point (pI)

34.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EXPB1_D1 PF22514 34 - 157 4.7e-09 EXPB1-like domain 1
DPBB_1 PF03330 65 - 150 2.3e-22 Lytic transglycolase
Expansin_C PF01357 161 - 238 5.5e-34 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 417
Acc65I GGTACC 1 cut(s) 457
AccB1I GGYRCC 2 cut(s) 279, 457
AccI GTMKAC 1 cut(s) 17
AccII CGCG 1 cut(s) 392
AciI CCGC 3 cut(s) 237, 354, 685
AclWI GGATC 1 cut(s) 488
AcoI YGGCCR 3 cut(s) 646, 682, 730
AfaI GTAC 3 cut(s) 136, 182, 459
AfiI CCNNNNNNNGG 4 cut(s) 453, 472, 573, 603
AgsI TTSAA 4 cut(s) 220, 514, 557, 664
AhdI GACNNNNNGTC 1 cut(s) 13
AleI CACNNNNGTG 1 cut(s) 533
AluBI AGCT 3 cut(s) 200, 234, 428
AluI AGCT 3 cut(s) 200, 234, 428
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 2 cut(s) 448, 700
AlwI GGATC 1 cut(s) 488
AoxI GGCC 4 cut(s) 646, 682, 730, 745
ApeKI GCWGC 3 cut(s) 197, 234, 394
Asp718I GGTACC 1 cut(s) 457
AspLEI GCGC 2 cut(s) 394, 418
AspS9I GGNCC 1 cut(s) 520
AsuC2I CCSGG 1 cut(s) 288
AsuHPI GGTGA 3 cut(s) 89, 134, 560
AvaII GGWCC 1 cut(s) 520
BanI GGYRCC 2 cut(s) 279, 457
BbsI GAAGAC 1 cut(s) 394
Bbv12I GWGCWC 1 cut(s) 209
BbvCI CCTCAGC 1 cut(s) 372
BbvI GCAGC 3 cut(s) 209, 221, 406
BccI CCATC 3 cut(s) 74, 575, 674
BceAI ACGGC 3 cut(s) 199, 367, 661
BcnI CCSGG 1 cut(s) 288
BcoDI GTCTC 2 cut(s) 448, 700
BfaI CTAG 1 cut(s) 603
BfmI CTRYAG 1 cut(s) 690
BisI GCNGC 4 cut(s) 198, 235, 395, 685
BlsI GCNGC 4 cut(s) 199, 236, 396, 686
Bme1390I CCNGG 1 cut(s) 288
Bme18I GGWCC 1 cut(s) 520
BmeRI GACNNNNNGTC 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 520
BmiI GGNNCC 2 cut(s) 281, 459
BmrFI CCNGG 1 cut(s) 288
BmrI ACTGGG 1 cut(s) 619
BmsI GCATC 3 cut(s) 85, 115, 385
BmuI ACTGGG 1 cut(s) 619
BpiI GAAGAC 1 cut(s) 394
Bpu10I CCTNAGC 1 cut(s) 372
BpuEI CTTGAG 1 cut(s) 250
BpuMI CCSGG 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 175
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
Bsc4I CCNNNNNNNGG 4 cut(s) 453, 472, 573, 603
Bse1I ACTGG 3 cut(s) 589, 614, 675
BseDI CCNNGG 1 cut(s) 175
BseLI CCNNNNNNNGG 4 cut(s) 453, 472, 573, 603
BseMII CTCAG 2 cut(s) 194, 386
BseNI ACTGG 3 cut(s) 589, 614, 675
BseRI GAGGAG 1 cut(s) 360
BseXI GCAGC 3 cut(s) 209, 221, 406
Bsh1236I CGCG 1 cut(s) 392
BshFI GGCC 4 cut(s) 648, 684, 732, 747
BshNI GGYRCC 2 cut(s) 279, 457
BsiHKAI GWGCWC 1 cut(s) 209
BsiSI CCGG 3 cut(s) 288, 713, 744
BslFI GGGAC 1 cut(s) 422
BslI CCNNNNNNNGG 4 cut(s) 453, 472, 573, 603
BsmAI GTCTC 2 cut(s) 448, 700
BsmFI GGGAC 1 cut(s) 422
BsnI GGCC 4 cut(s) 648, 684, 732, 747
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 3 cut(s) 252, 385, 480
BspACI CCGC 3 cut(s) 237, 354, 685
BspANI GGCC 4 cut(s) 648, 684, 732, 747
BspCNI CTCAG 2 cut(s) 195, 385
BspFNI CGCG 1 cut(s) 392
BspLI GGNNCC 2 cut(s) 281, 459
BspPI GGATC 1 cut(s) 488
BspT107I GGYRCC 2 cut(s) 279, 457
BsrI ACTGG 3 cut(s) 589, 614, 675
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 3 cut(s) 252, 385, 480
BssT1I CCWWGG 1 cut(s) 175
Bst4CI ACNGT 3 cut(s) 22, 500, 691
BstC8I GCNNGC 2 cut(s) 244, 718
BstDEI CTNAG 2 cut(s) 203, 372
BstENI CCTNNNNNAGG 1 cut(s) 451
BstFNI CGCG 1 cut(s) 392
BstHHI GCGC 2 cut(s) 394, 418
BstKTI GATC 3 cut(s) 255, 388, 483
BstMAI GTCTC 2 cut(s) 448, 700
BstMBI GATC 3 cut(s) 252, 385, 480
BstMWI GCNNNNNNNGC 4 cut(s) 234, 243, 360, 415
BstSCI CCNGG 1 cut(s) 286
BstSFI CTRYAG 1 cut(s) 690
BstUI CGCG 1 cut(s) 392
BstV1I GCAGC 3 cut(s) 209, 221, 406
BstV2I GAAGAC 1 cut(s) 394
BsuRI GGCC 4 cut(s) 648, 684, 732, 747
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 3 cut(s) 303, 682, 687
Cac8I GCNNGC 2 cut(s) 244, 718
CfoI GCGC 2 cut(s) 394, 418
Cfr13I GGNCC 1 cut(s) 520
Csp6I GTAC 3 cut(s) 135, 181, 458
CviAII CATG 3 cut(s) 68, 101, 598
CviQI GTAC 3 cut(s) 135, 181, 458
DdeI CTNAG 2 cut(s) 203, 372
DpnI GATC 3 cut(s) 254, 387, 482
DpnII GATC 3 cut(s) 252, 385, 480
DriI GACNNNNNGTC 1 cut(s) 13
EaeI YGGCCR 3 cut(s) 646, 682, 730
Eam1105I GACNNNNNGTC 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 175
Eco47I GGWCC 1 cut(s) 520
EcoNI CCTNNNNNAGG 1 cut(s) 451
EcoT14I CCWWGG 1 cut(s) 175
ErhI CCWWGG 1 cut(s) 175
FaeI CATG 3 cut(s) 71, 104, 601
FalI AAGNNNNNCTT 2 cut(s) 445, 477
FaqI GGGAC 1 cut(s) 422
FatI CATG 3 cut(s) 67, 100, 597
FauI CCCGC 1 cut(s) 230
FblI GTMKAC 1 cut(s) 17
Fnu4HI GCNGC 4 cut(s) 198, 235, 395, 685
Fsp4HI GCNGC 4 cut(s) 198, 235, 395, 685
FspBI CTAG 1 cut(s) 603
FspI TGCGCA 1 cut(s) 417
GlaI GCGC 2 cut(s) 393, 417
GluI GCNGC 4 cut(s) 198, 235, 395, 685
HaeIII GGCC 4 cut(s) 648, 684, 732, 747
HapII CCGG 3 cut(s) 288, 713, 744
HhaI GCGC 2 cut(s) 394, 418
Hin1II CATG 3 cut(s) 71, 104, 601
Hin6I GCGC 2 cut(s) 392, 416
HinP1I GCGC 2 cut(s) 392, 416
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HinfI GANTC 2 cut(s) 432, 486
HpaII CCGG 3 cut(s) 288, 713, 744
HphI GGTGA 3 cut(s) 89, 134, 560
Hpy166II GTNNAC 1 cut(s) 18
Hpy188I TCNGA 4 cut(s) 51, 204, 485, 618
Hpy188III TCNNGA 1 cut(s) 579
Hpy8I GTNNAC 1 cut(s) 18
Hpy99I CGWCG 2 cut(s) 22, 647
HpyAV CCTTC 3 cut(s) 293, 447, 466
HpyCH4III ACNGT 3 cut(s) 22, 500, 691
HpyCH4IV ACGT 1 cut(s) 534
HpyCH4V TGCA 2 cut(s) 4, 363
HpyF10VI GCNNNNNNNGC 4 cut(s) 234, 243, 360, 415
HpyF3I CTNAG 2 cut(s) 203, 372
HpySE526I ACGT 1 cut(s) 534
Hsp92II CATG 3 cut(s) 71, 104, 601
HspAI GCGC 2 cut(s) 392, 416
KpnI GGTACC 1 cut(s) 461
Kzo9I GATC 3 cut(s) 252, 385, 480
Lsp1109I GCAGC 3 cut(s) 209, 221, 406
LweI GCATC 3 cut(s) 85, 115, 385
MaeI CTAG 1 cut(s) 603
MaeII ACGT 1 cut(s) 534
MaeIII GTNAC 3 cut(s) 301, 500, 667
MalI GATC 3 cut(s) 254, 387, 482
MboI GATC 3 cut(s) 252, 385, 480
MboII GAAGA 1 cut(s) 394
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 3 cut(s) 313, 619, 752
MmeI TCCRAC 1 cut(s) 660
MnlI CCTC 7 cut(s) 77, 139, 333, 378, 381, 650, 758
MseI TTAA 1 cut(s) 760
MslI CAYNNNNRTG 2 cut(s) 72, 533
MspI CCGG 3 cut(s) 288, 713, 744
MspR9I CCNGG 1 cut(s) 288
MvnI CGCG 1 cut(s) 392
MwoI GCNNNNNNNGC 4 cut(s) 234, 243, 360, 415
NciI CCSGG 1 cut(s) 288
NdeII GATC 3 cut(s) 252, 385, 480
NlaIII CATG 3 cut(s) 71, 104, 601
NlaIV GGNNCC 2 cut(s) 281, 459
NmuCI GTSAC 3 cut(s) 301, 500, 667
NsbI TGCGCA 1 cut(s) 417
OliI CACNNNNGTG 1 cut(s) 533
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PfeI GAWTC 2 cut(s) 432, 486
PkrI GCNGC 4 cut(s) 199, 236, 396, 686
PspN4I GGNNCC 2 cut(s) 281, 459
PspPI GGNCC 1 cut(s) 520
RsaI GTAC 3 cut(s) 136, 182, 459
RsaNI GTAC 3 cut(s) 135, 181, 458
RseI CAYNNNNRTG 2 cut(s) 72, 533
SalI GTCGAC 1 cut(s) 16
SaqAI TTAA 1 cut(s) 760
SatI GCNGC 4 cut(s) 198, 235, 395, 685
Sau3AI GATC 3 cut(s) 252, 385, 480
Sau96I GGNCC 1 cut(s) 520
ScrFI CCNGG 1 cut(s) 288
SduI GDGCHC 1 cut(s) 209
SetI ASST 9 cut(s) 88, 168, 202, 236, 430, 463, 537, 642, 669
SfaNI GCATC 3 cut(s) 85, 115, 385
SfcI CTRYAG 1 cut(s) 690
SinI GGWCC 1 cut(s) 520
SmiMI CAYNNNNRTG 2 cut(s) 72, 533
SmlI CTYRAG 1 cut(s) 229
SmoI CTYRAG 1 cut(s) 229
Sse9I AATT 3 cut(s) 313, 619, 752
SsiI CCGC 3 cut(s) 237, 354, 685
SspMI CTAG 1 cut(s) 603
StyD4I CCNGG 1 cut(s) 286
StyI CCWWGG 1 cut(s) 175
TaaI ACNGT 3 cut(s) 22, 500, 691
TaiI ACGT 1 cut(s) 537
TaqI TCGA 3 cut(s) 17, 384, 642
TasI AATT 3 cut(s) 313, 619, 752
TauI GCSGC 1 cut(s) 687
TfiI GAWTC 2 cut(s) 432, 486
Tru1I TTAA 1 cut(s) 760
Tru9I TTAA 1 cut(s) 760
TscAI CASTG 3 cut(s) 310, 682, 694
TseFI GTSAC 3 cut(s) 301, 500, 667
TseI GCWGC 3 cut(s) 197, 234, 394
Tsp45I GTSAC 3 cut(s) 301, 500, 667
TspDTI ATGAA 1 cut(s) 648
TspRI CASTG 3 cut(s) 310, 682, 694
VpaK11BI GGWCC 1 cut(s) 520
XagI CCTNNNNNAGG 1 cut(s) 451
XcmI CCANNNNNNNNNTGG 1 cut(s) 473
XmiI GTMKAC 1 cut(s) 17
XspI CTAG 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.