Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003982

Physical Location & Seq

Genomic Coordinates Forward (+)

65668816 .. 65671126

Gene Structure 2311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005178

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGCAGAGAAATTTAGAACCAGTTGCAACTTCCCAAAAGGACAAAATGTCGACGGTGCTTCTCTTGTTGGGGCTTCTTTCTCTGACCCCATTGTTTGCTCATGCTTATGGTGATGGAGGTTGGGTTGATGCTCATGCCACTTTTTATGGTGGGGGTGACGCCTCCGGTACTATGGGTGGGGCTTGTGGGTATGGAAACCTATACAGCCAAGGGTACGGCACAAACACAGCAGCTCTGAGCACAGCCTTGTTCAACAATGGCTTGAGCTGCGGGGCTTGCTTTGAGATTAAGTGTGTCAATGACCCCAAATGGTGCCTTCCCGGTTCTATTTTGGTCACTGCCACCAATTTCTGCCCTCCAAACAATGCTCTCCCTAACAACAACGGCGGTTGGTGCAACCCTCCTCAGCATCATTTTGATCTCTCGCAGCCCGTCTTCCAGCATATTGCGCAATACAGAGCTGGAATCGTCCCTGTCTCCTACCGGAGGGTACCTTGCCAAAAGAAGGGTGGGATCAGATTCACAATCAACGGTCACACATACTTCAATCTGGTCCTAATCACAAACGTGGGTGGTGCTGGTGATGTTCAATCTGTTTCCATCAAAGGGTCAAGAACTGGTTGGCAACCCATGTCTAGGAACTGGGGTCAGAATTGGCAGAGCAACTCCAACCTCGACGGCCAAAGCCTCTCATTCAAGGTCACAACCAGTGATGGCCGTACTGTCGTCTCTAACAATGTTGTTCCGGCAGGCTGGTCTTTCGGCCAGACTTTCTCCGGCCTCCAATTCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

265

Amino Acids

28.23

Weight (kDa)

8.8

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	45 - 168	8.7e-09	EXPB1-like domain 1
DPBB_1	PF03330	76 - 161	3.3e-23	Lytic transglycolase
Expansin_C	PF01357	172 - 249	1.6e-33	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003982)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31140 FvH4_5g14760 FvH4_5g14760
malus_domestica	MD06G1195100.v1.1 MD13G1070200.v1.1 MD14G1202100.v1.1 MD16G1070600.v1.1
prunus_persica	Prupe.1G276700_v2.0.a1 Prupe.5G195200_v2.0.a1
pyrus_communis	pycom06g17260 pycom13g06300 pycom14g16740 pycom16g06140
rosa_chinensis	RchiOBHm_Chr4g0439541 RchiOBHm_Chr7g0181621
rosa_laevigata	RLG00000005178 RLG00000006260
rosa_multiflora	Rmu_sc0000988.1_g000016 Rmu_sc0007276.1_g000013
rosa_roxburghii	Rroxscaffold_3G00271840 Rroxscaffold_5G00380460
rosa_rugosa	Rorug04G0319400 Rorug06G0442600 Rorug06G0442600
rosa_samantha	Rh4AG370600 Rh4BG382400 Rh4CG397000 Rh7AG045000 Rh7BG044000 Rh7BG044100 Rh7CG045700
rosa_wichuraiana	Rw4G031590 Rw7G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	450
Acc65I	GGTACC	1 cut(s)	490
AccB1I	GGYRCC	2 cut(s)	312, 490
AccI	GTMKAC	1 cut(s)	50
AciI	CCGC	2 cut(s)	270, 387
AclWI	GGATC	1 cut(s)	521
AcoI	YGGCCR	3 cut(s)	679, 715, 763
AcsI	RAATTY	1 cut(s)	10
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	4 cut(s)	169, 215, 492, 721
AfiI	CCNNNNNNNGG	4 cut(s)	486, 505, 606, 636
AgsI	TTSAA	4 cut(s)	253, 547, 590, 697
AhdI	GACNNNNNGTC	1 cut(s)	46
AleI	CACNNNNGTG	1 cut(s)	566
AluBI	AGCT	3 cut(s)	233, 267, 461
AluI	AGCT	3 cut(s)	233, 267, 461
Alw21I	GWGCWC	1 cut(s)	242
Alw26I	GTCTC	2 cut(s)	481, 733
AlwI	GGATC	1 cut(s)	521
AoxI	GGCC	4 cut(s)	679, 715, 763, 778
ApeKI	GCWGC	3 cut(s)	230, 267, 427
ApoI	RAATTY	1 cut(s)	10
Asp718I	GGTACC	1 cut(s)	490
AspLEI	GCGC	1 cut(s)	451
AspS9I	GGNCC	1 cut(s)	553
AsuC2I	CCSGG	1 cut(s)	321
AsuHPI	GGTGA	3 cut(s)	122, 167, 593
AvaII	GGWCC	1 cut(s)	553
BanI	GGYRCC	2 cut(s)	312, 490
BbsI	GAAGAC	1 cut(s)	427
Bbv12I	GWGCWC	1 cut(s)	242
BbvCI	CCTCAGC	1 cut(s)	405
BbvI	GCAGC	3 cut(s)	242, 254, 439
BccI	CCATC	3 cut(s)	107, 608, 707
BceAI	ACGGC	4 cut(s)	232, 400, 694, 702
BcnI	CCSGG	1 cut(s)	321
BcoDI	GTCTC	2 cut(s)	481, 733
BfaI	CTAG	1 cut(s)	636
BisI	GCNGC	3 cut(s)	231, 268, 428
BlsI	GCNGC	3 cut(s)	232, 269, 429
Bme1390I	CCNGG	1 cut(s)	321
Bme18I	GGWCC	1 cut(s)	553
BmeRI	GACNNNNNGTC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	553
BmiI	GGNNCC	2 cut(s)	314, 492
BmrFI	CCNGG	1 cut(s)	321
BmrI	ACTGGG	1 cut(s)	652
BmsI	GCATC	2 cut(s)	118, 418
BmuI	ACTGGG	1 cut(s)	652
BpiI	GAAGAC	1 cut(s)	427
Bpu10I	CCTNAGC	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	283
BpuMI	CCSGG	1 cut(s)	321
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	208
BsaWI	WCCGGW	2 cut(s)	164, 483
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	4 cut(s)	486, 505, 606, 636
Bse1I	ACTGG	4 cut(s)	20, 622, 647, 708
BseDI	CCNNGG	1 cut(s)	208
BseLI	CCNNNNNNNGG	4 cut(s)	486, 505, 606, 636
BseMII	CTCAG	2 cut(s)	227, 419
BseNI	ACTGG	4 cut(s)	20, 622, 647, 708
BseRI	GAGGAG	1 cut(s)	393
BseXI	GCAGC	3 cut(s)	242, 254, 439
BshFI	GGCC	4 cut(s)	681, 717, 765, 780
BshNI	GGYRCC	2 cut(s)	312, 490
BsiHKAI	GWGCWC	1 cut(s)	242
BsiSI	CCGG	5 cut(s)	165, 321, 484, 746, 777
BslFI	GGGAC	1 cut(s)	455
BslI	CCNNNNNNNGG	4 cut(s)	486, 505, 606, 636
BsmAI	GTCTC	2 cut(s)	481, 733
BsmBI	CGTCTC	1 cut(s)	733
BsmFI	GGGAC	1 cut(s)	455
BsnI	GGCC	4 cut(s)	681, 717, 765, 780
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp143I	GATC	2 cut(s)	418, 513
BspACI	CCGC	2 cut(s)	270, 387
BspANI	GGCC	4 cut(s)	681, 717, 765, 780
BspCNI	CTCAG	2 cut(s)	228, 418
BspLI	GGNNCC	2 cut(s)	314, 492
BspPI	GGATC	1 cut(s)	521
BspT107I	GGYRCC	2 cut(s)	312, 490
BsrI	ACTGG	4 cut(s)	20, 622, 647, 708
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	2 cut(s)	418, 513
BssNI	GRCGYC	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	208
Bst4CI	ACNGT	3 cut(s)	55, 533, 724
BstACI	GRCGYC	1 cut(s)	159
BstC8I	GCNNGC	2 cut(s)	277, 751
BstDEI	CTNAG	2 cut(s)	236, 405
BstENI	CCTNNNNNAGG	1 cut(s)	484
BstHHI	GCGC	1 cut(s)	451
BstKTI	GATC	2 cut(s)	421, 516
BstMAI	GTCTC	2 cut(s)	481, 733
BstMBI	GATC	2 cut(s)	418, 513
BstMWI	GCNNNNNNNGC	4 cut(s)	267, 276, 393, 448
BstSCI	CCNGG	1 cut(s)	319
BstV1I	GCAGC	3 cut(s)	242, 254, 439
BstV2I	GAAGAC	1 cut(s)	427
BsuRI	GGCC	4 cut(s)	681, 717, 765, 780
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	2 cut(s)	336, 715
Cac8I	GCNNGC	2 cut(s)	277, 751
CfoI	GCGC	1 cut(s)	451
Cfr13I	GGNCC	1 cut(s)	553
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	4 cut(s)	168, 214, 491, 720
CviAII	CATG	3 cut(s)	101, 134, 631
CviQI	GTAC	4 cut(s)	168, 214, 491, 720
DdeI	CTNAG	2 cut(s)	236, 405
DpnI	GATC	2 cut(s)	420, 515
DpnII	GATC	2 cut(s)	418, 513
DriI	GACNNNNNGTC	1 cut(s)	46
EaeI	YGGCCR	3 cut(s)	679, 715, 763
Eam1105I	GACNNNNNGTC	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	208
Eco47I	GGWCC	1 cut(s)	553
EcoNI	CCTNNNNNAGG	1 cut(s)	484
EcoT14I	CCWWGG	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	208
Esp3I	CGTCTC	1 cut(s)	733
FaeI	CATG	3 cut(s)	104, 137, 634
FaqI	GGGAC	1 cut(s)	455
FatI	CATG	3 cut(s)	100, 133, 630
FauI	CCCGC	1 cut(s)	263
FblI	GTMKAC	1 cut(s)	50
Fnu4HI	GCNGC	3 cut(s)	231, 268, 428
Fsp4HI	GCNGC	3 cut(s)	231, 268, 428
FspBI	CTAG	1 cut(s)	636
FspI	TGCGCA	1 cut(s)	450
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	3 cut(s)	231, 268, 428
HaeIII	GGCC	4 cut(s)	681, 717, 765, 780
HapII	CCGG	5 cut(s)	165, 321, 484, 746, 777
HgaI	GACGC	1 cut(s)	167
HhaI	GCGC	1 cut(s)	451
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	3 cut(s)	104, 137, 634
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HinfI	GANTC	2 cut(s)	465, 519
HpaII	CCGG	5 cut(s)	165, 321, 484, 746, 777
HphI	GGTGA	3 cut(s)	122, 167, 593
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	4 cut(s)	84, 237, 518, 651
Hpy188III	TCNNGA	1 cut(s)	612
Hpy8I	GTNNAC	1 cut(s)	51
Hpy99I	CGWCG	2 cut(s)	55, 680
HpyAV	CCTTC	2 cut(s)	326, 499
HpyCH4III	ACNGT	3 cut(s)	55, 533, 724
HpyCH4IV	ACGT	1 cut(s)	567
HpyCH4V	TGCA	3 cut(s)	4, 26, 396
HpyF10VI	GCNNNNNNNGC	4 cut(s)	267, 276, 393, 448
HpyF3I	CTNAG	2 cut(s)	236, 405
HpySE526I	ACGT	1 cut(s)	567
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	3 cut(s)	104, 137, 634
HspAI	GCGC	1 cut(s)	449
KpnI	GGTACC	1 cut(s)	494
Kzo9I	GATC	2 cut(s)	418, 513
Lsp1109I	GCAGC	3 cut(s)	242, 254, 439
LweI	GCATC	2 cut(s)	118, 418
MaeI	CTAG	1 cut(s)	636
MaeII	ACGT	1 cut(s)	567
MaeIII	GTNAC	4 cut(s)	155, 334, 533, 700
MalI	GATC	2 cut(s)	420, 515
MboI	GATC	2 cut(s)	418, 513
MboII	GAAGA	1 cut(s)	427
MhlI	GDGCHC	1 cut(s)	242
MluCI	AATT	4 cut(s)	10, 346, 652, 785
MmeI	TCCRAC	1 cut(s)	693
MnlI	CCTC	9 cut(s)	110, 172, 366, 411, 414, 480, 683, 698, 791
MseI	TTAA	2 cut(s)	288, 793
MslI	CAYNNNNRTG	2 cut(s)	105, 566
MspI	CCGG	5 cut(s)	165, 321, 484, 746, 777
MspR9I	CCNGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	4 cut(s)	267, 276, 393, 448
NciI	CCSGG	1 cut(s)	321
NdeII	GATC	2 cut(s)	418, 513
NlaIII	CATG	3 cut(s)	104, 137, 634
NlaIV	GGNNCC	2 cut(s)	314, 492
NmuCI	GTSAC	4 cut(s)	155, 334, 533, 700
NsbI	TGCGCA	1 cut(s)	450
OliI	CACNNNNGTG	1 cut(s)	566
PfeI	GAWTC	2 cut(s)	465, 519
PkrI	GCNGC	3 cut(s)	232, 269, 429
PspN4I	GGNNCC	2 cut(s)	314, 492
PspPI	GGNCC	1 cut(s)	553
RsaI	GTAC	4 cut(s)	169, 215, 492, 721
RsaNI	GTAC	4 cut(s)	168, 214, 491, 720
RseI	CAYNNNNRTG	2 cut(s)	105, 566
SalI	GTCGAC	1 cut(s)	49
SaqAI	TTAA	2 cut(s)	288, 793
SatI	GCNGC	3 cut(s)	231, 268, 428
Sau3AI	GATC	2 cut(s)	418, 513
Sau96I	GGNCC	1 cut(s)	553
ScrFI	CCNGG	1 cut(s)	321
SduI	GDGCHC	1 cut(s)	242
SetI	ASST	9 cut(s)	121, 201, 235, 269, 463, 496, 570, 675, 702
SfaNI	GCATC	2 cut(s)	118, 418
SinI	GGWCC	1 cut(s)	553
SmiMI	CAYNNNNRTG	2 cut(s)	105, 566
SmlI	CTYRAG	1 cut(s)	262
SmoI	CTYRAG	1 cut(s)	262
Sse9I	AATT	4 cut(s)	10, 346, 652, 785
SsiI	CCGC	2 cut(s)	270, 387
SspMI	CTAG	1 cut(s)	636
StyD4I	CCNGG	1 cut(s)	319
StyI	CCWWGG	1 cut(s)	208
TaaI	ACNGT	3 cut(s)	55, 533, 724
TaiI	ACGT	1 cut(s)	570
TaqI	TCGA	2 cut(s)	50, 675
TasI	AATT	4 cut(s)	10, 346, 652, 785
TfiI	GAWTC	2 cut(s)	465, 519
Tru1I	TTAA	2 cut(s)	288, 793
Tru9I	TTAA	2 cut(s)	288, 793
TscAI	CASTG	2 cut(s)	343, 715
TseFI	GTSAC	4 cut(s)	155, 334, 533, 700
TseI	GCWGC	3 cut(s)	230, 267, 427
Tsp45I	GTSAC	4 cut(s)	155, 334, 533, 700
TspRI	CASTG	2 cut(s)	343, 715
VpaK11BI	GGWCC	1 cut(s)	553
XagI	CCTNNNNNAGG	1 cut(s)	484
XapI	RAATTY	1 cut(s)	10
XcmI	CCANNNNNNNNNTGG	1 cut(s)	506
XmiI	GTMKAC	1 cut(s)	50
XspI	CTAG	1 cut(s)	636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.