Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007276.1

Orthogroup ID

OG0003982

Physical Location & Seq

Genomic Coordinates Forward (+)

71787 .. 74268

Gene Structure 2482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007276.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

atggcattcaattcgtttaccagaaaagatttgggcattgaattctcaattcctgctatccctagtcgtatcaaacggctcgattggagccttggaggtggctctgtggctggagcctggaagctggaactctggaagagtggaaggcggaaccgatatgaagttctgaacggggagacaggtctcatcatccatcctataatgaaaatggcttctgctgtgtttttcttggtgggtcttcttgcaatggtgacctgtgcgcatgcttatggtggtggtggttgggttaacgctcgtgccactttctatggaggtggtgatgcttctggaacaatgggtggtgcttgtgggtatggaaacctctacagccaggggtatggtacaaacactgctgctctgagcactgctctgttcaacaatgggctgggatgtgggtcttgctatgaaattaggtgtgtgaatgacccaaaatggtgccttcctggctccattgtggtcacagccactaatttctgccctccaaacaatgcgctacctaacaatgctgggggttggtgcaaccctcctcagcatcactttgacctctcccaacctgtattccagcacattgctcaatacaaagctggtgttgtccctgtttcttacagaagggtaccctgcagcagaaggggaggcatcagattcaccatcaatggccactcctacttcaacctggttttgatcacaaacgttggtggtgctggtgatgtgcactctgtttcagtcaaagggtccagaaccggttggcaaccaatgtccagaaactgggggcaaaactggcaaagcaactcatatctgaatgggcaagccctatccttcaaggtcacaaccagtgatggccgcactgtggtgtcctacaatactgccccagctcgttggtcctttggccagaccttcagtggtgcccagttccgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

318

Amino Acids

34.28

Weight (kDa)

9.66

Isoelectric Point (pI)

34.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003982)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31140 FvH4_5g14760 FvH4_5g14760
malus_domestica	MD06G1195100.v1.1 MD13G1070200.v1.1 MD14G1202100.v1.1 MD16G1070600.v1.1
prunus_persica	Prupe.1G276700_v2.0.a1 Prupe.5G195200_v2.0.a1
pyrus_communis	pycom06g17260 pycom13g06300 pycom14g16740 pycom16g06140
rosa_chinensis	RchiOBHm_Chr4g0439541 RchiOBHm_Chr7g0181621
rosa_laevigata	RLG00000005178 RLG00000006260
rosa_multiflora	Rmu_sc0000988.1_g000016 Rmu_sc0007276.1_g000013
rosa_roxburghii	Rroxscaffold_3G00271840 Rroxscaffold_5G00380460
rosa_rugosa	Rorug04G0319400 Rorug06G0442600 Rorug06G0442600
rosa_samantha	Rh4AG370600 Rh4BG382400 Rh4CG397000 Rh7AG045000 Rh7BG044000 Rh7BG044100 Rh7CG045700
rosa_wichuraiana	Rw4G031590 Rw7G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	261
Acc65I	GGTACC	1 cut(s)	652
AccB1I	GGYRCC	3 cut(s)	474, 652, 941
AccB7I	CCANNNNNTGG	1 cut(s)	804
AciI	CCGC	3 cut(s)	148, 880, 952
AclI	AACGTT	1 cut(s)	729
AcoI	YGGCCR	3 cut(s)	694, 877, 925
AcsI	RAATTY	1 cut(s)	41
AcuI	CTGAAG	1 cut(s)	919
AfaI	GTAC	2 cut(s)	382, 654
AfiI	CCNNNNNNNGG	2 cut(s)	804, 886
AgeI	ACCGGT	1 cut(s)	779
AgsI	TTSAA	5 cut(s)	10, 41, 415, 709, 859
AjnI	CCWGG	4 cut(s)	116, 369, 481, 711
AleI	CACNNNNGTG	1 cut(s)	887
AluBI	AGCT	3 cut(s)	124, 623, 911
AluI	AGCT	3 cut(s)	124, 623, 911
Alw21I	GWGCWC	2 cut(s)	404, 753
Alw26I	GTCTC	2 cut(s)	170, 188
Alw44I	GTGCAC	1 cut(s)	749
AlwNI	CAGNNNCTG	1 cut(s)	804
AoxI	GGCC	3 cut(s)	694, 877, 925
ApaLI	GTGCAC	1 cut(s)	749
ApeKI	GCWGC	2 cut(s)	392, 660
ApoI	RAATTY	1 cut(s)	41
AsiGI	ACCGGT	1 cut(s)	779
Asp718I	GGTACC	1 cut(s)	652
AspLEI	GCGC	2 cut(s)	262, 532
AspS9I	GGNCC	2 cut(s)	771, 918
AsuHPI	GGTGA	4 cut(s)	262, 329, 676, 755
AvaII	GGWCC	2 cut(s)	771, 918
BaeGI	GKGCMC	2 cut(s)	753, 946
BalI	TGGCCA	2 cut(s)	696, 927
BanI	GGYRCC	3 cut(s)	474, 652, 941
BauI	CACGAG	1 cut(s)	294
BbsI	GAAGAC	1 cut(s)	230
Bbv12I	GWGCWC	2 cut(s)	404, 753
BbvCI	CCTCAGC	1 cut(s)	567
BbvI	GCAGC	2 cut(s)	379, 672
BccI	CCATC	3 cut(s)	201, 695, 869
BceAI	ACGGC	1 cut(s)	92
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciT130I	CCWGG	4 cut(s)	118, 371, 483, 713
BclI	TGATCA	1 cut(s)	720
BcoDI	GTCTC	2 cut(s)	170, 188
BfaI	CTAG	1 cut(s)	63
BfmI	CTRYAG	2 cut(s)	364, 658
BglI	GCCNNNNNGGC	1 cut(s)	483
BisI	GCNGC	3 cut(s)	393, 661, 880
BlsI	GCNGC	3 cut(s)	394, 662, 881
Bme1390I	CCNGG	4 cut(s)	118, 371, 483, 713
Bme18I	GGWCC	2 cut(s)	771, 918
BmgT120I	GGNCC	2 cut(s)	771, 918
BmiI	GGNNCC	8 cut(s)	89, 115, 152, 476, 487, 654, 772, 943
BmrFI	CCNGG	4 cut(s)	118, 371, 483, 713
BmrI	ACTGGG	2 cut(s)	814, 940
BmsI	GCATC	3 cut(s)	310, 580, 684
BmuI	ACTGGG	2 cut(s)	814, 940
BpiI	GAAGAC	1 cut(s)	230
BplI	GAGNNNNNCTC	2 cut(s)	391, 423
BpmI	CTGGAG	1 cut(s)	132
Bpu10I	CCTNAGC	1 cut(s)	567
BsaI	GGTCTC	1 cut(s)	188
BsaJI	CCNNGG	2 cut(s)	91, 370
BsaWI	WCCGGW	1 cut(s)	779
Bsc4I	CCNNNNNNNGG	2 cut(s)	804, 886
Bse118I	RCCGGY	1 cut(s)	779
Bse1I	ACTGG	4 cut(s)	809, 821, 870, 946
Bse3DI	GCAATG	2 cut(s)	252, 606
BseBI	CCWGG	4 cut(s)	118, 371, 483, 713
BseDI	CCNNGG	2 cut(s)	91, 370
BseGI	GGATG	3 cut(s)	189, 193, 434
BseLI	CCNNNNNNNGG	2 cut(s)	804, 886
BseMI	GCAATG	2 cut(s)	252, 606
BseMII	CTCAG	2 cut(s)	389, 581
BseNI	ACTGG	4 cut(s)	809, 821, 870, 946
BseRI	GAGGAG	1 cut(s)	555
BseSI	GKGCMC	2 cut(s)	753, 946
BseXI	GCAGC	2 cut(s)	379, 672
BseYI	CCCAGC	3 cut(s)	424, 545, 907
BshFI	GGCC	3 cut(s)	696, 879, 927
BshNI	GGYRCC	3 cut(s)	474, 652, 941
BshTI	ACCGGT	1 cut(s)	779
BsiHKAI	GWGCWC	2 cut(s)	404, 753
BsiSI	CCGG	1 cut(s)	780
BslFI	GGGAC	1 cut(s)	617
BslI	CCNNNNNNNGG	2 cut(s)	804, 886
BsmAI	GTCTC	2 cut(s)	170, 188
BsmFI	GGGAC	1 cut(s)	617
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	3 cut(s)	696, 879, 927
Bso31I	GGTCTC	1 cut(s)	188
Bsp1286I	GDGCHC	3 cut(s)	404, 753, 946
Bsp143I	GATC	1 cut(s)	720
BspACI	CCGC	3 cut(s)	148, 880, 952
BspANI	GGCC	3 cut(s)	696, 879, 927
BspCNI	CTCAG	2 cut(s)	390, 580
BspLI	GGNNCC	8 cut(s)	89, 115, 152, 476, 487, 654, 772, 943
BspMAI	CTGCAG	1 cut(s)	662
BspT107I	GGYRCC	3 cut(s)	474, 652, 941
BspTNI	GGTCTC	1 cut(s)	188
BsrDI	GCAATG	2 cut(s)	252, 606
BsrFI	RCCGGY	1 cut(s)	779
BsrI	ACTGG	4 cut(s)	809, 821, 870, 946
BssAI	RCCGGY	1 cut(s)	779
BssECI	CCNNGG	2 cut(s)	91, 370
BssMI	GATC	1 cut(s)	720
BssSI	CACGAG	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	91
Bst2BI	CACGAG	1 cut(s)	294
Bst2UI	CCWGG	4 cut(s)	118, 371, 483, 713
Bst4CI	ACNGT	1 cut(s)	886
Bst6I	CTCTTC	1 cut(s)	131
BstC8I	GCNNGC	2 cut(s)	264, 846
BstDEI	CTNAG	2 cut(s)	398, 567
BstEII	GGTNACC	1 cut(s)	250
BstF5I	GGATG	3 cut(s)	189, 193, 434
BstHHI	GCGC	2 cut(s)	262, 532
BstKTI	GATC	1 cut(s)	723
BstMAI	GTCTC	2 cut(s)	170, 188
BstMBI	GATC	1 cut(s)	720
BstMWI	GCNNNNNNNGC	2 cut(s)	483, 817
BstNI	CCWGG	4 cut(s)	118, 371, 483, 713
BstNSI	RCATGY	1 cut(s)	266
BstPI	GGTNACC	1 cut(s)	250
BstSCI	CCNGG	4 cut(s)	116, 369, 481, 711
BstSFI	CTRYAG	2 cut(s)	364, 658
BstSLI	GKGCMC	2 cut(s)	753, 946
BstV1I	GCAGC	2 cut(s)	379, 672
BstV2I	GAAGAC	1 cut(s)	230
BstXI	CCANNNNNNTGG	2 cut(s)	377, 915
BsuRI	GGCC	3 cut(s)	696, 879, 927
BtsCI	GGATG	3 cut(s)	189, 193, 434
BtsI	GCAGTG	2 cut(s)	387, 402
BtsIMutI	CAGTG	5 cut(s)	387, 402, 877, 882, 943
Cac8I	GCNNGC	2 cut(s)	264, 846
CaiI	CAGNNNCTG	1 cut(s)	804
CfoI	GCGC	2 cut(s)	262, 532
Cfr10I	RCCGGY	1 cut(s)	779
Cfr13I	GGNCC	2 cut(s)	771, 918
CsiI	ACCWGGT	1 cut(s)	711
Csp6I	GTAC	2 cut(s)	381, 653
CspAI	ACCGGT	1 cut(s)	779
CviAII	CATG	1 cut(s)	263
CviQI	GTAC	2 cut(s)	381, 653
DdeI	CTNAG	2 cut(s)	398, 567
DpnI	GATC	1 cut(s)	722
DpnII	GATC	1 cut(s)	720
EaeI	YGGCCR	3 cut(s)	694, 877, 925
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
EciI	GGCGGA	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	91
Eco31I	GGTCTC	1 cut(s)	188
Eco47I	GGWCC	2 cut(s)	771, 918
Eco57I	CTGAAG	1 cut(s)	919
Eco91I	GGTNACC	1 cut(s)	250
EcoO65I	GGTNACC	1 cut(s)	250
EcoRI	GAATTC	1 cut(s)	41
EcoRII	CCWGG	4 cut(s)	116, 369, 481, 711
EcoT14I	CCWWGG	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	1 cut(s)	266
FaiI	YATR	9 cut(s)	159, 200, 264, 270, 309, 354, 378, 444, 832
FaqI	GGGAC	1 cut(s)	617
FatI	CATG	1 cut(s)	262
FbaI	TGATCA	1 cut(s)	720
Fnu4HI	GCNGC	3 cut(s)	393, 661, 880
FokI	GGATG	3 cut(s)	176, 180, 441
Fsp4HI	GCNGC	3 cut(s)	393, 661, 880
FspAI	RTGCGCAY	1 cut(s)	261
FspBI	CTAG	1 cut(s)	63
FspI	TGCGCA	1 cut(s)	261
GlaI	GCGC	2 cut(s)	261, 531
GluI	GCNGC	3 cut(s)	393, 661, 880
GsaI	CCCAGC	3 cut(s)	428, 549, 911
GsuI	CTGGAG	1 cut(s)	132
HaeIII	GGCC	3 cut(s)	696, 879, 927
HapII	CCGG	1 cut(s)	780
HhaI	GCGC	2 cut(s)	262, 532
Hin1II	CATG	1 cut(s)	266
Hin6I	GCGC	2 cut(s)	260, 530
HinP1I	GCGC	2 cut(s)	260, 530
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HinfI	GANTC	1 cut(s)	681
HpaI	GTTAAC	1 cut(s)	289
HpaII	CCGG	1 cut(s)	780
HphI	GGTGA	4 cut(s)	262, 329, 676, 755
Hpy166II	GTNNAC	3 cut(s)	18, 289, 751
Hpy188I	TCNGA	4 cut(s)	168, 399, 680, 837
Hpy188III	TCNNGA	4 cut(s)	133, 327, 774, 798
Hpy8I	GTNNAC	3 cut(s)	18, 289, 751
HpyAV	CCTTC	6 cut(s)	138, 488, 642, 660, 865, 943
HpyCH4III	ACNGT	1 cut(s)	886
HpyCH4IV	ACGT	1 cut(s)	729
HpyCH4V	TGCA	4 cut(s)	245, 558, 660, 751
HpyF10VI	GCNNNNNNNGC	2 cut(s)	483, 817
HpyF3I	CTNAG	2 cut(s)	398, 567
HpySE526I	ACGT	1 cut(s)	729
Hsp92II	CATG	1 cut(s)	266
HspAI	GCGC	2 cut(s)	260, 530
KpnI	GGTACC	1 cut(s)	656
Ksp22I	TGATCA	1 cut(s)	720
KspAI	GTTAAC	1 cut(s)	289
Kzo9I	GATC	1 cut(s)	720
LmnI	GCTCC	3 cut(s)	87, 113, 491
Lsp1109I	GCAGC	2 cut(s)	379, 672
LweI	GCATC	3 cut(s)	310, 580, 684
MabI	ACCWGGT	1 cut(s)	711
MaeI	CTAG	1 cut(s)	63
MaeII	ACGT	1 cut(s)	729
MaeIII	GTNAC	3 cut(s)	250, 496, 862
MalI	GATC	1 cut(s)	722
MboI	GATC	1 cut(s)	720
MboII	GAAGA	2 cut(s)	148, 230
MhlI	GDGCHC	3 cut(s)	404, 753, 946
MlsI	TGGCCA	2 cut(s)	696, 927
MluCI	AATT	5 cut(s)	10, 41, 48, 447, 508
MluNI	TGGCCA	2 cut(s)	696, 927
MnlI	CCTC	8 cut(s)	89, 305, 371, 528, 573, 576, 593, 665
Mox20I	TGGCCA	2 cut(s)	696, 927
MscI	TGGCCA	2 cut(s)	696, 927
MseI	TTAA	1 cut(s)	288
MslI	CAYNNNNRTG	2 cut(s)	267, 887
Msp20I	TGGCCA	2 cut(s)	696, 927
MspI	CCGG	1 cut(s)	780
MspR9I	CCNGG	4 cut(s)	118, 371, 483, 713
Mva1269I	GAATGC	1 cut(s)	5
MvaI	CCWGG	4 cut(s)	118, 371, 483, 713
MwoI	GCNNNNNNNGC	2 cut(s)	483, 817
NdeII	GATC	1 cut(s)	720
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	8 cut(s)	89, 115, 152, 476, 487, 654, 772, 943
NmuCI	GTSAC	3 cut(s)	250, 496, 862
NsbI	TGCGCA	1 cut(s)	261
NspI	RCATGY	1 cut(s)	266
OliI	CACNNNNGTG	1 cut(s)	887
PaeI	GCATGC	1 cut(s)	266
PctI	GAATGC	1 cut(s)	5
PfeI	GAWTC	1 cut(s)	681
PflMI	CCANNNNNTGG	1 cut(s)	804
PinAI	ACCGGT	1 cut(s)	779
PkrI	GCNGC	3 cut(s)	394, 662, 881
Psp1406I	AACGTT	1 cut(s)	729
Psp6I	CCWGG	4 cut(s)	116, 369, 481, 711
PspEI	GGTNACC	1 cut(s)	250
PspFI	CCCAGC	3 cut(s)	424, 545, 907
PspGI	CCWGG	4 cut(s)	116, 369, 481, 711
PspN4I	GGNNCC	8 cut(s)	89, 115, 152, 476, 487, 654, 772, 943
PspPI	GGNCC	2 cut(s)	771, 918
PstI	CTGCAG	1 cut(s)	662
PstNI	CAGNNNCTG	1 cut(s)	804
RsaI	GTAC	2 cut(s)	382, 654
RsaNI	GTAC	2 cut(s)	381, 653
RseI	CAYNNNNRTG	2 cut(s)	267, 887
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	3 cut(s)	393, 661, 880
Sau3AI	GATC	1 cut(s)	720
Sau96I	GGNCC	2 cut(s)	771, 918
ScrFI	CCNGG	4 cut(s)	118, 371, 483, 713
SduI	GDGCHC	3 cut(s)	404, 753, 946
SexAI	ACCWGGT	1 cut(s)	711
SfaNI	GCATC	3 cut(s)	310, 580, 684
SfcI	CTRYAG	2 cut(s)	364, 658
SinI	GGWCC	2 cut(s)	771, 918
SmiMI	CAYNNNNRTG	2 cut(s)	267, 887
SphI	GCATGC	1 cut(s)	266
Sse9I	AATT	5 cut(s)	10, 41, 48, 447, 508
SsiI	CCGC	3 cut(s)	148, 880, 952
SspMI	CTAG	1 cut(s)	63
StyD4I	CCNGG	4 cut(s)	116, 369, 481, 711
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	1 cut(s)	886
TaiI	ACGT	1 cut(s)	732
TaqI	TCGA	1 cut(s)	81
TasI	AATT	5 cut(s)	10, 41, 48, 447, 508
TauI	GCSGC	1 cut(s)	882
TfiI	GAWTC	1 cut(s)	681
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	5 cut(s)	394, 409, 877, 889, 943
TseFI	GTSAC	3 cut(s)	250, 496, 862
TseI	GCWGC	2 cut(s)	392, 660
Tsp45I	GTSAC	3 cut(s)	250, 496, 862
TspDTI	ATGAA	3 cut(s)	174, 218, 459
TspRI	CASTG	5 cut(s)	394, 409, 877, 889, 943
Van91I	CCANNNNNTGG	1 cut(s)	804
VneI	GTGCAC	1 cut(s)	749
VpaK11BI	GGWCC	2 cut(s)	771, 918
XapI	RAATTY	1 cut(s)	41
XceI	RCATGY	1 cut(s)	266
XcmI	CCANNNNNNNNNTGG	2 cut(s)	28, 935
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.