Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003982

Physical Location & Seq

Genomic Coordinates Reverse (-)

3024760 .. 3026982

Gene Structure 2223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G003740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGTCGACGGTGCTTCTCTTGTTGGGGCTTCTTTCTCTGACCCCATTGTTTGCTCATGCTTATGGTGATGGAGGTTGGGTTGATGCTCATGCCACTTTTTATGGTGGGGGTGATGCCTCTGGTACTATGGGTGGGGCTTGTGGGTATGGAAACCTATACAGCCAAGGGTACGGCACAAACACAGCAGCTCTGAGCACAGCGTTGTTCAACAATGGCTTGAGCTGCGGGGCTTGTTTTGAGATCAAGTGTGTCAATGACCCCAAATGGTGCCTTCCCGGTTCTATTTTGGTCACTGCCACCAATTTCTGCCCTCCAAACAATGCTCTCCCTAACAACAACGGCGGTTGGTGCAACCCTCCTCAGCATCATTTCGATCTCGCGCAGCCCGTCTTCCAGCATATTGCGCAATACAGAGCTGGAATCGTCCCTGTCTCCTACCGAAGGGTACCTTGCCAAAAGAAGGGTGGGATCAGATTCACAATCAACGGTCACTCATACTTCAATCTGGTCCTAATCACAAACGTGGCTGGTGCTGGTGATGTTCAATCTGTTTCCATCAAAGGGTCAAGAACTGGTTGGCAACCCATGTCTAGGAACTGGGGTCAGAATTGGCAGAGCAACTCCAACCTCGACGGCCAGAGCCTTTCATTCAAGGTCACAACCAGTGATGGCCGCACTGTAGTCTCTAACAATGTTGTTCCGGCAGGCTGGTCTTTCGGCCAGACTTTCTCCGGCCTCCAATTCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

249

Amino Acids

26.49

Weight (kDa)

8.64

Isoelectric Point (pI)

33.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	30 - 153	4.5e-09	EXPB1-like domain 1
DPBB_1	PF03330	61 - 146	2.2e-22	Lytic transglycolase
Expansin_C	PF01357	157 - 234	5.4e-34	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003982)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31140 FvH4_5g14760 FvH4_5g14760
malus_domestica	MD06G1195100.v1.1 MD13G1070200.v1.1 MD14G1202100.v1.1 MD16G1070600.v1.1
prunus_persica	Prupe.1G276700_v2.0.a1 Prupe.5G195200_v2.0.a1
pyrus_communis	pycom06g17260 pycom13g06300 pycom14g16740 pycom16g06140
rosa_chinensis	RchiOBHm_Chr4g0439541 RchiOBHm_Chr7g0181621
rosa_laevigata	RLG00000005178 RLG00000006260
rosa_multiflora	Rmu_sc0000988.1_g000016 Rmu_sc0007276.1_g000013
rosa_roxburghii	Rroxscaffold_3G00271840 Rroxscaffold_5G00380460
rosa_rugosa	Rorug04G0319400 Rorug06G0442600 Rorug06G0442600
rosa_samantha	Rh4AG370600 Rh4BG382400 Rh4CG397000 Rh7AG045000 Rh7BG044000 Rh7BG044100 Rh7CG045700
rosa_wichuraiana	Rw4G031590 Rw7G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	405
Acc65I	GGTACC	1 cut(s)	445
AccB1I	GGYRCC	2 cut(s)	267, 445
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	380
AciI	CCGC	3 cut(s)	225, 342, 673
AclWI	GGATC	1 cut(s)	476
AcoI	YGGCCR	3 cut(s)	634, 670, 718
AfaI	GTAC	3 cut(s)	124, 170, 447
AfiI	CCNNNNNNNGG	4 cut(s)	441, 460, 561, 591
AgsI	TTSAA	4 cut(s)	208, 502, 545, 652
AleI	CACNNNNGTG	1 cut(s)	521
AluBI	AGCT	3 cut(s)	188, 222, 416
AluI	AGCT	3 cut(s)	188, 222, 416
Alw21I	GWGCWC	1 cut(s)	197
Alw26I	GTCTC	2 cut(s)	436, 688
AlwI	GGATC	1 cut(s)	476
AoxI	GGCC	4 cut(s)	634, 670, 718, 733
ApeKI	GCWGC	3 cut(s)	185, 222, 382
Asp718I	GGTACC	1 cut(s)	445
AspLEI	GCGC	2 cut(s)	382, 406
AspS9I	GGNCC	1 cut(s)	508
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	3 cut(s)	77, 122, 548
AvaII	GGWCC	1 cut(s)	508
BanI	GGYRCC	2 cut(s)	267, 445
BbsI	GAAGAC	1 cut(s)	382
Bbv12I	GWGCWC	1 cut(s)	197
BbvCI	CCTCAGC	1 cut(s)	360
BbvI	GCAGC	3 cut(s)	197, 209, 394
BccI	CCATC	3 cut(s)	62, 563, 662
BceAI	ACGGC	3 cut(s)	187, 355, 649
BcnI	CCSGG	1 cut(s)	276
BcoDI	GTCTC	2 cut(s)	436, 688
BfaI	CTAG	1 cut(s)	591
BfmI	CTRYAG	1 cut(s)	678
BisI	GCNGC	4 cut(s)	186, 223, 383, 673
BlsI	GCNGC	4 cut(s)	187, 224, 384, 674
Bme1390I	CCNGG	1 cut(s)	276
Bme18I	GGWCC	1 cut(s)	508
BmgT120I	GGNCC	1 cut(s)	508
BmiI	GGNNCC	2 cut(s)	269, 447
BmrFI	CCNGG	1 cut(s)	276
BmrI	ACTGGG	1 cut(s)	607
BmsI	GCATC	3 cut(s)	73, 103, 373
BmuI	ACTGGG	1 cut(s)	607
BpiI	GAAGAC	1 cut(s)	382
Bpu10I	CCTNAGC	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	238
BpuMI	CCSGG	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	163
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	4 cut(s)	441, 460, 561, 591
Bse1I	ACTGG	3 cut(s)	577, 602, 663
BseDI	CCNNGG	1 cut(s)	163
BseLI	CCNNNNNNNGG	4 cut(s)	441, 460, 561, 591
BseMII	CTCAG	2 cut(s)	182, 374
BseNI	ACTGG	3 cut(s)	577, 602, 663
BseRI	GAGGAG	1 cut(s)	348
BseXI	GCAGC	3 cut(s)	197, 209, 394
Bsh1236I	CGCG	1 cut(s)	380
BshFI	GGCC	4 cut(s)	636, 672, 720, 735
BshNI	GGYRCC	2 cut(s)	267, 445
BsiHKAI	GWGCWC	1 cut(s)	197
BsiSI	CCGG	3 cut(s)	276, 701, 732
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	4 cut(s)	441, 460, 561, 591
BsmAI	GTCTC	2 cut(s)	436, 688
BsmFI	GGGAC	1 cut(s)	410
BsnI	GGCC	4 cut(s)	636, 672, 720, 735
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	3 cut(s)	240, 373, 468
BspACI	CCGC	3 cut(s)	225, 342, 673
BspANI	GGCC	4 cut(s)	636, 672, 720, 735
BspCNI	CTCAG	2 cut(s)	183, 373
BspFNI	CGCG	1 cut(s)	380
BspLI	GGNNCC	2 cut(s)	269, 447
BspPI	GGATC	1 cut(s)	476
BspT107I	GGYRCC	2 cut(s)	267, 445
BsrI	ACTGG	3 cut(s)	577, 602, 663
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	3 cut(s)	240, 373, 468
BssT1I	CCWWGG	1 cut(s)	163
Bst4CI	ACNGT	3 cut(s)	10, 488, 679
BstC8I	GCNNGC	1 cut(s)	706
BstDEI	CTNAG	2 cut(s)	191, 360
BstENI	CCTNNNNNAGG	1 cut(s)	439
BstFNI	CGCG	1 cut(s)	380
BstHHI	GCGC	2 cut(s)	382, 406
BstKTI	GATC	3 cut(s)	243, 376, 471
BstMAI	GTCTC	2 cut(s)	436, 688
BstMBI	GATC	3 cut(s)	240, 373, 468
BstMWI	GCNNNNNNNGC	3 cut(s)	222, 348, 403
BstSCI	CCNGG	1 cut(s)	274
BstSFI	CTRYAG	1 cut(s)	678
BstUI	CGCG	1 cut(s)	380
BstV1I	GCAGC	3 cut(s)	197, 209, 394
BstV2I	GAAGAC	1 cut(s)	382
BsuRI	GGCC	4 cut(s)	636, 672, 720, 735
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	3 cut(s)	291, 670, 675
Cac8I	GCNNGC	1 cut(s)	706
CfoI	GCGC	2 cut(s)	382, 406
Cfr13I	GGNCC	1 cut(s)	508
Csp6I	GTAC	3 cut(s)	123, 169, 446
CviAII	CATG	3 cut(s)	56, 89, 586
CviQI	GTAC	3 cut(s)	123, 169, 446
DdeI	CTNAG	2 cut(s)	191, 360
DpnI	GATC	3 cut(s)	242, 375, 470
DpnII	GATC	3 cut(s)	240, 373, 468
EaeI	YGGCCR	3 cut(s)	634, 670, 718
Eco130I	CCWWGG	1 cut(s)	163
Eco47I	GGWCC	1 cut(s)	508
EcoNI	CCTNNNNNAGG	1 cut(s)	439
EcoT14I	CCWWGG	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	3 cut(s)	59, 92, 589
FalI	AAGNNNNNCTT	2 cut(s)	433, 465
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	3 cut(s)	55, 88, 585
FauI	CCCGC	1 cut(s)	218
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	4 cut(s)	186, 223, 383, 673
Fsp4HI	GCNGC	4 cut(s)	186, 223, 383, 673
FspBI	CTAG	1 cut(s)	591
FspI	TGCGCA	1 cut(s)	405
GlaI	GCGC	2 cut(s)	381, 405
GluI	GCNGC	4 cut(s)	186, 223, 383, 673
HaeIII	GGCC	4 cut(s)	636, 672, 720, 735
HapII	CCGG	3 cut(s)	276, 701, 732
HhaI	GCGC	2 cut(s)	382, 406
Hin1II	CATG	3 cut(s)	59, 92, 589
Hin6I	GCGC	2 cut(s)	380, 404
HinP1I	GCGC	2 cut(s)	380, 404
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	420, 474
HpaII	CCGG	3 cut(s)	276, 701, 732
HphI	GGTGA	3 cut(s)	77, 122, 548
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	4 cut(s)	39, 192, 473, 606
Hpy188III	TCNNGA	1 cut(s)	567
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	2 cut(s)	10, 635
HpyAV	CCTTC	3 cut(s)	281, 435, 454
HpyCH4III	ACNGT	3 cut(s)	10, 488, 679
HpyCH4IV	ACGT	1 cut(s)	522
HpyCH4V	TGCA	1 cut(s)	351
HpyF10VI	GCNNNNNNNGC	3 cut(s)	222, 348, 403
HpyF3I	CTNAG	2 cut(s)	191, 360
HpySE526I	ACGT	1 cut(s)	522
Hsp92II	CATG	3 cut(s)	59, 92, 589
HspAI	GCGC	2 cut(s)	380, 404
KpnI	GGTACC	1 cut(s)	449
Kzo9I	GATC	3 cut(s)	240, 373, 468
Lsp1109I	GCAGC	3 cut(s)	197, 209, 394
LweI	GCATC	3 cut(s)	73, 103, 373
MaeI	CTAG	1 cut(s)	591
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	3 cut(s)	289, 488, 655
MalI	GATC	3 cut(s)	242, 375, 470
MboI	GATC	3 cut(s)	240, 373, 468
MboII	GAAGA	1 cut(s)	382
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	3 cut(s)	301, 607, 740
MmeI	TCCRAC	1 cut(s)	648
MnlI	CCTC	7 cut(s)	65, 127, 321, 366, 369, 638, 746
MseI	TTAA	1 cut(s)	748
MslI	CAYNNNNRTG	2 cut(s)	60, 521
MspI	CCGG	3 cut(s)	276, 701, 732
MspR9I	CCNGG	1 cut(s)	276
MvnI	CGCG	1 cut(s)	380
MwoI	GCNNNNNNNGC	3 cut(s)	222, 348, 403
NciI	CCSGG	1 cut(s)	276
NdeII	GATC	3 cut(s)	240, 373, 468
NlaIII	CATG	3 cut(s)	59, 92, 589
NlaIV	GGNNCC	2 cut(s)	269, 447
NmuCI	GTSAC	3 cut(s)	289, 488, 655
NsbI	TGCGCA	1 cut(s)	405
OliI	CACNNNNGTG	1 cut(s)	521
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PfeI	GAWTC	2 cut(s)	420, 474
PkrI	GCNGC	4 cut(s)	187, 224, 384, 674
PspN4I	GGNNCC	2 cut(s)	269, 447
PspPI	GGNCC	1 cut(s)	508
RsaI	GTAC	3 cut(s)	124, 170, 447
RsaNI	GTAC	3 cut(s)	123, 169, 446
RseI	CAYNNNNRTG	2 cut(s)	60, 521
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	748
SatI	GCNGC	4 cut(s)	186, 223, 383, 673
Sau3AI	GATC	3 cut(s)	240, 373, 468
Sau96I	GGNCC	1 cut(s)	508
ScrFI	CCNGG	1 cut(s)	276
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	9 cut(s)	76, 156, 190, 224, 418, 451, 525, 630, 657
SfaNI	GCATC	3 cut(s)	73, 103, 373
SfcI	CTRYAG	1 cut(s)	678
SinI	GGWCC	1 cut(s)	508
SmiMI	CAYNNNNRTG	2 cut(s)	60, 521
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
Sse9I	AATT	3 cut(s)	301, 607, 740
SsiI	CCGC	3 cut(s)	225, 342, 673
SspMI	CTAG	1 cut(s)	591
StyD4I	CCNGG	1 cut(s)	274
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	3 cut(s)	10, 488, 679
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	3 cut(s)	5, 372, 630
TasI	AATT	3 cut(s)	301, 607, 740
TauI	GCSGC	1 cut(s)	675
TfiI	GAWTC	2 cut(s)	420, 474
Tru1I	TTAA	1 cut(s)	748
Tru9I	TTAA	1 cut(s)	748
TscAI	CASTG	3 cut(s)	298, 670, 682
TseFI	GTSAC	3 cut(s)	289, 488, 655
TseI	GCWGC	3 cut(s)	185, 222, 382
Tsp45I	GTSAC	3 cut(s)	289, 488, 655
TspDTI	ATGAA	1 cut(s)	636
TspRI	CASTG	3 cut(s)	298, 670, 682
VpaK11BI	GGWCC	1 cut(s)	508
XagI	CCTNNNNNAGG	1 cut(s)	439
XcmI	CCANNNNNNNNNTGG	1 cut(s)	461
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.