Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0003982

Physical Location & Seq

Genomic Coordinates Forward (+)

4920888 .. 4923129

Gene Structure 2242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1070200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCGGGTCTTCTTGCAATGTTGGTAGCCTCTGCGCATGCTTACGGCGGAGGCGGGTGGGTTAATGCTCGCGCCACTTTCTACGGCGGCGGTGACGCTTCTGGCACAATGGGTGGAGCTTGTGGTTACGGCAACCTCTACAGCCAGGGGTACGGAACCAATACGGCCGCGCTGAGTACTGCTCTGTTCAACAATGGGCTGGGGTGTGGATCTTGCTACCAGATTAGGTGTGTGAACGACCCCAAATGGTGTCTGCCGGGCACCATTGTGGTCACCGCCACCAATTTCTGCCCGCCGAACAACGCCCTCCCCAACAATGCCGGCGGCTGGTGCAACCCTCCCCAGCACCACTTCGACCTCTCTCAGCCTGTCTTCCAGCACATTGCCCAATACAAAGCCGGAGTTGTGCCTGTGTCCTACAGAAGGGTACCCTGCAGGAGAAGGGGAGGCATCAGATTCACAATCAACGGACACTCCTACTTCAACCTGGTCCTTATCACAAACGTTGGTGGTGCCGGTGATGTGCACTCTGTTTCCGTCAAAGGGTCCAGAACTGGCTGGCAAGCAATGTCCCGAAACTGGGGGCAAAACTGGCAATCCAACAGCTACCTCAATGGCCAAGCTCTCTCTTTCAAGGTCACAACCAGTGACGGCAGGACTGTTGTGTCCTACAATGCTGCCCCTGCTGGGTGGTCCTTTGGGCAGACCTACAGCGGTGCCCAATTCCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

244

Amino Acids

25.75

Weight (kDa)

9.5

Isoelectric Point (pI)

32.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	24 - 146	1.7e-09	EXPB1-like domain 1
DPBB_1	PF03330	55 - 140	1.6e-23	Lytic transglycolase
Expansin_C	PF01357	151 - 228	2.4e-33	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003982)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31140 FvH4_5g14760 FvH4_5g14760
malus_domestica	MD06G1195100.v1.1 MD13G1070200.v1.1 MD14G1202100.v1.1 MD16G1070600.v1.1
prunus_persica	Prupe.1G276700_v2.0.a1 Prupe.5G195200_v2.0.a1
pyrus_communis	pycom06g17260 pycom13g06300 pycom14g16740 pycom16g06140
rosa_chinensis	RchiOBHm_Chr4g0439541 RchiOBHm_Chr7g0181621
rosa_laevigata	RLG00000005178 RLG00000006260
rosa_multiflora	Rmu_sc0000988.1_g000016 Rmu_sc0007276.1_g000013
rosa_roxburghii	Rroxscaffold_3G00271840 Rroxscaffold_5G00380460
rosa_rugosa	Rorug04G0319400 Rorug06G0442600 Rorug06G0442600
rosa_samantha	Rh4AG370600 Rh4BG382400 Rh4CG397000 Rh7AG045000 Rh7BG044000 Rh7BG044100 Rh7CG045700
rosa_wichuraiana	Rw4G031590 Rw7G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	664
Acc16I	TGCGCA	1 cut(s)	36
Acc65I	GGTACC	1 cut(s)	427
AccB1I	GGYRCC	4 cut(s)	260, 427, 512, 716
AccII	CGCG	2 cut(s)	72, 170
AclI	AACGTT	1 cut(s)	504
AclWI	GGATC	1 cut(s)	217
AcoI	YGGCCR	2 cut(s)	165, 616
AfaI	GTAC	3 cut(s)	152, 178, 429
AfiI	CCNNNNNNNGG	6 cut(s)	327, 423, 543, 579, 580, 687
AgsI	TTSAA	3 cut(s)	190, 484, 634
AjnI	CCWGG	2 cut(s)	144, 486
AleI	CACNNNNGTG	1 cut(s)	266
AluBI	AGCT	3 cut(s)	119, 606, 623
AluI	AGCT	3 cut(s)	119, 606, 623
Alw21I	GWGCWC	1 cut(s)	528
Alw44I	GTGCAC	1 cut(s)	524
AlwI	GGATC	1 cut(s)	217
AoxI	GGCC	2 cut(s)	165, 616
ApaLI	GTGCAC	1 cut(s)	524
ApeKI	GCWGC	1 cut(s)	677
Asp718I	GGTACC	1 cut(s)	427
AspLEI	GCGC	3 cut(s)	37, 74, 172
AspS9I	GGNCC	3 cut(s)	490, 546, 693
AsuC2I	CCSGG	1 cut(s)	258
AsuHPI	GGTGA	3 cut(s)	104, 265, 530
AvaII	GGWCC	3 cut(s)	490, 546, 693
BaeGI	GKGCMC	3 cut(s)	263, 528, 721
BalI	TGGCCA	1 cut(s)	618
BanI	GGYRCC	4 cut(s)	260, 427, 512, 716
BbsI	GAAGAC	2 cut(s)	2, 364
Bbv12I	GWGCWC	1 cut(s)	528
BbvI	GCAGC	1 cut(s)	664
BceAI	ACGGC	5 cut(s)	61, 100, 145, 180, 667
BciT130I	CCWGG	2 cut(s)	146, 488
BcnI	CCSGG	1 cut(s)	258
BfaI	CTAG	1 cut(s)	730
BfmI	CTRYAG	4 cut(s)	139, 418, 433, 709
BisI	GCNGC	4 cut(s)	88, 168, 325, 678
BlsI	GCNGC	4 cut(s)	89, 169, 326, 679
BmcAI	AGTACT	1 cut(s)	178
Bme1390I	CCNGG	3 cut(s)	146, 258, 488
Bme18I	GGWCC	3 cut(s)	490, 546, 693
BmgT120I	GGNCC	3 cut(s)	490, 546, 693
BmiI	GGNNCC	6 cut(s)	157, 262, 429, 514, 547, 718
BmrFI	CCNGG	3 cut(s)	146, 258, 488
BmrI	ACTGGG	1 cut(s)	589
BmsI	GCATC	1 cut(s)	459
BmuI	ACTGGG	1 cut(s)	589
BpiI	GAAGAC	2 cut(s)	2, 364
BplI	GAGNNNNNCTC	2 cut(s)	166, 198
BpuMI	CCSGG	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	145
BsaXI	ACNNNNNCTCC	2 cut(s)	458, 488
Bsc4I	CCNNNNNNNGG	6 cut(s)	327, 423, 543, 579, 580, 687
Bse118I	RCCGGY	2 cut(s)	320, 515
Bse1I	ACTGG	4 cut(s)	559, 584, 596, 645
Bse3DI	GCAATG	3 cut(s)	24, 381, 573
BseBI	CCWGG	2 cut(s)	146, 488
BseDI	CCNNGG	1 cut(s)	145
BseLI	CCNNNNNNNGG	6 cut(s)	327, 423, 543, 579, 580, 687
BseMI	GCAATG	3 cut(s)	24, 381, 573
BseMII	CTCAG	2 cut(s)	164, 377
BseNI	ACTGG	4 cut(s)	559, 584, 596, 645
BseSI	GKGCMC	3 cut(s)	263, 528, 721
BseX3I	CGGCCG	1 cut(s)	165
BseXI	GCAGC	1 cut(s)	664
BseYI	CCCAGC	3 cut(s)	199, 342, 686
Bsh1236I	CGCG	2 cut(s)	72, 170
Bsh1285I	CGRYCG	1 cut(s)	168
BshFI	GGCC	2 cut(s)	167, 618
BshNI	GGYRCC	4 cut(s)	260, 427, 512, 716
BsiEI	CGRYCG	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	528
BsiSI	CCGG	4 cut(s)	257, 321, 399, 516
BslFI	GGGAC	1 cut(s)	556
BslI	CCNNNNNNNGG	6 cut(s)	327, 423, 543, 579, 580, 687
BsmFI	GGGAC	1 cut(s)	556
BsnI	GGCC	2 cut(s)	167, 618
Bsp1286I	GDGCHC	3 cut(s)	263, 528, 721
Bsp143I	GATC	1 cut(s)	209
BspANI	GGCC	2 cut(s)	167, 618
BspCNI	CTCAG	2 cut(s)	165, 376
BspFNI	CGCG	2 cut(s)	72, 170
BspLI	GGNNCC	6 cut(s)	157, 262, 429, 514, 547, 718
BspMAI	CTGCAG	1 cut(s)	437
BspPI	GGATC	1 cut(s)	217
BspT107I	GGYRCC	4 cut(s)	260, 427, 512, 716
BsrDI	GCAATG	3 cut(s)	24, 381, 573
BsrFI	RCCGGY	2 cut(s)	320, 515
BsrI	ACTGG	4 cut(s)	559, 584, 596, 645
BssAI	RCCGGY	2 cut(s)	320, 515
BssECI	CCNNGG	1 cut(s)	145
BssMI	GATC	1 cut(s)	209
Bst2UI	CCWGG	2 cut(s)	146, 488
Bst4CI	ACNGT	1 cut(s)	661
BstC8I	GCNNGC	6 cut(s)	39, 70, 293, 322, 560, 564
BstDEI	CTNAG	2 cut(s)	173, 363
BstEII	GGTNACC	1 cut(s)	271
BstENI	CCTNNNNNAGG	1 cut(s)	421
BstFNI	CGCG	2 cut(s)	72, 170
BstHHI	GCGC	3 cut(s)	37, 74, 172
BstKTI	GATC	1 cut(s)	212
BstMBI	GATC	1 cut(s)	209
BstMCI	CGRYCG	1 cut(s)	168
BstMWI	GCNNNNNNNGC	3 cut(s)	330, 592, 683
BstNI	CCWGG	2 cut(s)	146, 488
BstNSI	RCATGY	1 cut(s)	41
BstPI	GGTNACC	1 cut(s)	271
BstSCI	CCNGG	3 cut(s)	144, 256, 486
BstSFI	CTRYAG	4 cut(s)	139, 418, 433, 709
BstSLI	GKGCMC	3 cut(s)	263, 528, 721
BstUI	CGCG	2 cut(s)	72, 170
BstV1I	GCAGC	1 cut(s)	664
BstV2I	GAAGAC	2 cut(s)	2, 364
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
BstZI	CGGCCG	1 cut(s)	165
BsuRI	GGCC	2 cut(s)	167, 618
BtsIMutI	CAGTG	1 cut(s)	652
Cac8I	GCNNGC	6 cut(s)	39, 70, 293, 322, 560, 564
CfoI	GCGC	3 cut(s)	37, 74, 172
Cfr10I	RCCGGY	2 cut(s)	320, 515
Cfr13I	GGNCC	3 cut(s)	490, 546, 693
CseI	GACGC	1 cut(s)	104
CsiI	ACCWGGT	1 cut(s)	486
Csp6I	GTAC	3 cut(s)	151, 177, 428
CviAII	CATG	1 cut(s)	38
CviQI	GTAC	3 cut(s)	151, 177, 428
DdeI	CTNAG	2 cut(s)	173, 363
DpnI	GATC	1 cut(s)	211
DpnII	GATC	1 cut(s)	209
DrdI	GACNNNNNNGTC	1 cut(s)	664
DseDI	GACNNNNNNGTC	1 cut(s)	664
EaeI	YGGCCR	2 cut(s)	165, 616
EagI	CGGCCG	1 cut(s)	165
EciI	GGCGGA	1 cut(s)	63
EclXI	CGGCCG	1 cut(s)	165
Eco47I	GGWCC	3 cut(s)	490, 546, 693
Eco52I	CGGCCG	1 cut(s)	165
Eco91I	GGTNACC	1 cut(s)	271
EcoNI	CCTNNNNNAGG	1 cut(s)	421
EcoO65I	GGTNACC	1 cut(s)	271
EcoRII	CCWGG	2 cut(s)	144, 486
FaeI	CATG	1 cut(s)	41
FaiI	YATR	1 cut(s)	39
FaqI	GGGAC	1 cut(s)	556
FatI	CATG	1 cut(s)	37
FauI	CCCGC	2 cut(s)	47, 300
Fnu4HI	GCNGC	4 cut(s)	88, 168, 325, 678
Fsp4HI	GCNGC	4 cut(s)	88, 168, 325, 678
FspBI	CTAG	1 cut(s)	730
FspI	TGCGCA	1 cut(s)	36
GlaI	GCGC	3 cut(s)	36, 73, 171
GluI	GCNGC	4 cut(s)	88, 168, 325, 678
GsaI	CCCAGC	3 cut(s)	203, 346, 690
HaeIII	GGCC	2 cut(s)	167, 618
HapII	CCGG	4 cut(s)	257, 321, 399, 516
HgaI	GACGC	1 cut(s)	104
HhaI	GCGC	3 cut(s)	37, 74, 172
Hin1II	CATG	1 cut(s)	41
Hin6I	GCGC	3 cut(s)	35, 72, 170
HinP1I	GCGC	3 cut(s)	35, 72, 170
HinfI	GANTC	1 cut(s)	456
HpaII	CCGG	4 cut(s)	257, 321, 399, 516
HphI	GGTGA	3 cut(s)	104, 265, 530
Hpy166II	GTNNAC	2 cut(s)	235, 526
Hpy188I	TCNGA	1 cut(s)	455
Hpy188III	TCNNGA	2 cut(s)	549, 573
Hpy8I	GTNNAC	2 cut(s)	235, 526
HpyAV	CCTTC	2 cut(s)	417, 435
HpyCH4III	ACNGT	1 cut(s)	661
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	4 cut(s)	17, 333, 435, 526
HpyF10VI	GCNNNNNNNGC	3 cut(s)	330, 592, 683
HpyF3I	CTNAG	2 cut(s)	173, 363
HpySE526I	ACGT	1 cut(s)	504
Hsp92II	CATG	1 cut(s)	41
HspAI	GCGC	3 cut(s)	35, 72, 170
KpnI	GGTACC	1 cut(s)	431
KroI	GCCGGC	1 cut(s)	320
KroNI	GCCGGC	1 cut(s)	322
Kzo9I	GATC	1 cut(s)	209
LmnI	GCTCC	1 cut(s)	116
Lsp1109I	GCAGC	1 cut(s)	664
LweI	GCATC	1 cut(s)	459
MabI	ACCWGGT	1 cut(s)	486
MaeI	CTAG	1 cut(s)	730
MaeII	ACGT	1 cut(s)	504
MaeIII	GTNAC	5 cut(s)	92, 125, 271, 637, 647
MalI	GATC	1 cut(s)	211
MboI	GATC	1 cut(s)	209
MboII	GAAGA	1 cut(s)	364
MflI	RGATCY	1 cut(s)	209
MhlI	GDGCHC	3 cut(s)	263, 528, 721
MlsI	TGGCCA	1 cut(s)	618
MluCI	AATT	2 cut(s)	283, 722
MluNI	TGGCCA	1 cut(s)	618
MmeI	TCCRAC	1 cut(s)	624
MnlI	CCTC	8 cut(s)	40, 44, 146, 317, 348, 368, 440, 620
Mox20I	TGGCCA	1 cut(s)	618
MroNI	GCCGGC	1 cut(s)	320
MscI	TGGCCA	1 cut(s)	618
MseI	TTAA	1 cut(s)	63
MslI	CAYNNNNRTG	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	618
MspA1I	CMGCKG	1 cut(s)	714
MspI	CCGG	4 cut(s)	257, 321, 399, 516
MspR9I	CCNGG	3 cut(s)	146, 258, 488
MvaI	CCWGG	2 cut(s)	146, 488
MvnI	CGCG	2 cut(s)	72, 170
MwoI	GCNNNNNNNGC	3 cut(s)	330, 592, 683
NaeI	GCCGGC	1 cut(s)	322
NciI	CCSGG	1 cut(s)	258
NdeII	GATC	1 cut(s)	209
NgoMIV	GCCGGC	1 cut(s)	320
NlaIII	CATG	1 cut(s)	41
NlaIV	GGNNCC	6 cut(s)	157, 262, 429, 514, 547, 718
NmuCI	GTSAC	4 cut(s)	92, 271, 637, 647
NsbI	TGCGCA	1 cut(s)	36
NspI	RCATGY	1 cut(s)	41
OliI	CACNNNNGTG	1 cut(s)	266
PaeI	GCATGC	1 cut(s)	41
PdiI	GCCGGC	1 cut(s)	322
PfeI	GAWTC	1 cut(s)	456
PkrI	GCNGC	4 cut(s)	89, 169, 326, 679
Psp1406I	AACGTT	1 cut(s)	504
Psp6I	CCWGG	2 cut(s)	144, 486
PspEI	GGTNACC	1 cut(s)	271
PspFI	CCCAGC	3 cut(s)	199, 342, 686
PspGI	CCWGG	2 cut(s)	144, 486
PspN4I	GGNNCC	6 cut(s)	157, 262, 429, 514, 547, 718
PspPI	GGNCC	3 cut(s)	490, 546, 693
PstI	CTGCAG	1 cut(s)	437
PsuI	RGATCY	1 cut(s)	209
RsaI	GTAC	3 cut(s)	152, 178, 429
RsaNI	GTAC	3 cut(s)	151, 177, 428
RseI	CAYNNNNRTG	1 cut(s)	266
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	4 cut(s)	88, 168, 325, 678
Sau3AI	GATC	1 cut(s)	209
Sau96I	GGNCC	3 cut(s)	490, 546, 693
SbfI	CCTGCAGG	1 cut(s)	437
ScaI	AGTACT	1 cut(s)	178
ScrFI	CCNGG	3 cut(s)	146, 258, 488
SdaI	CCTGCAGG	1 cut(s)	437
SduI	GDGCHC	3 cut(s)	263, 528, 721
SexAI	ACCWGGT	1 cut(s)	486
SfaNI	GCATC	1 cut(s)	459
SfcI	CTRYAG	4 cut(s)	139, 418, 433, 709
SinI	GGWCC	3 cut(s)	490, 546, 693
SmiMI	CAYNNNNRTG	1 cut(s)	266
SphI	GCATGC	1 cut(s)	41
Sse8387I	CCTGCAGG	1 cut(s)	437
Sse9I	AATT	2 cut(s)	283, 722
SspMI	CTAG	1 cut(s)	730
StyD4I	CCNGG	3 cut(s)	144, 256, 486
TaaI	ACNGT	1 cut(s)	661
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	1 cut(s)	354
TasI	AATT	2 cut(s)	283, 722
TatI	WGTACW	1 cut(s)	176
TauI	GCSGC	3 cut(s)	90, 170, 327
TfiI	GAWTC	1 cut(s)	456
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	1 cut(s)	652
TseFI	GTSAC	4 cut(s)	92, 271, 637, 647
TseI	GCWGC	1 cut(s)	677
Tsp45I	GTSAC	4 cut(s)	92, 271, 637, 647
TspGWI	ACGGA	3 cut(s)	168, 483, 526
TspRI	CASTG	1 cut(s)	652
VneI	GTGCAC	1 cut(s)	524
VpaK11BI	GGWCC	3 cut(s)	490, 546, 693
XagI	CCTNNNNNAGG	1 cut(s)	421
XceI	RCATGY	1 cut(s)	41
XspI	CTAG	1 cut(s)	730
ZrmI	AGTACT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.