Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0003982

Physical Location & Seq

Genomic Coordinates Reverse (-)

32954957 .. 32956373

Gene Structure 1417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1195100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCAATTCTTGGTTTTCTCTTGGTGGGTCTTCTTTCTTTGAGCTCTTTTGCTTGTGGATATGGAGGAGGTGACGGTGGTTGGGTTGATGCACATGCCACTTTCTATGGTGGAGGTGATGCGTCCGGAACAATGGGTGGGGCTTGTGGCTATGGAAATCTGTATAGCCAAGGGTATGGAACTAACACGGCAGCTCTGAGCACAGCACTGTTCAACAATGGGCTGAGCTGCGGGGCTTGTTTTGAGATAAGGTGTGTGAGTGACCCCAAATGGTGTCTTCCGGGCTCTATTATGGTCACAGCGACCAATTTCTGCCCGCCAAACAATGCCCTTCCGAACAATGCCGGCGGTTGGTGCAACCCGCCGCAGCACCACTTCGATCTCGCCCAGCCCATCTTCCAGCGGATTGCTCAATACCGAGCTGGAATTGTGCCTGTGTCTTACAGAAGGGTGCCTTGCTTAAAGAAAGGAGGTATCAGATTCACAATCAACGGTCACTCATACTTTAATTTAGTGCTGATCACAAACGTTGGAGGTGCTGGTGATGTTCATGCAGTTTCCATCAAAGGGTCAAGAACTGGCTGGCAACCCATGTCAAGGAACTGGGGCCAAAACTGGCAGAGTAACTCTTTCCTCAACGGCCAGAGCCTCTCATTCAAGGTCACAACCAGCGACGGCCGCACGATCGTCTCCAACAACGTTGTTCCTGCCGGCTGGACCTTTGGCCAAACATTCAGCGGCCTACAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

251

Amino Acids

26.44

Weight (kDa)

8.91

Isoelectric Point (pI)

31.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	32 - 154	2.2e-08	EXPB1-like domain 1
DPBB_1	PF03330	63 - 148	2.7e-22	Lytic transglycolase
Expansin_C	PF01357	159 - 236	6.6e-34	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003982)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31140 FvH4_5g14760 FvH4_5g14760
malus_domestica	MD06G1195100.v1.1 MD13G1070200.v1.1 MD14G1202100.v1.1 MD16G1070600.v1.1
prunus_persica	Prupe.1G276700_v2.0.a1 Prupe.5G195200_v2.0.a1
pyrus_communis	pycom06g17260 pycom13g06300 pycom14g16740 pycom16g06140
rosa_chinensis	RchiOBHm_Chr4g0439541 RchiOBHm_Chr7g0181621
rosa_laevigata	RLG00000005178 RLG00000006260
rosa_multiflora	Rmu_sc0000988.1_g000016 Rmu_sc0007276.1_g000013
rosa_roxburghii	Rroxscaffold_3G00271840 Rroxscaffold_5G00380460
rosa_rugosa	Rorug04G0319400 Rorug06G0442600 Rorug06G0442600
rosa_samantha	Rh4AG370600 Rh4BG382400 Rh4CG397000 Rh7AG045000 Rh7BG044000 Rh7BG044100 Rh7CG045700
rosa_wichuraiana	Rw4G031590 Rw7G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	451
AccIII	TCCGGA	1 cut(s)	125
AciI	CCGC	8 cut(s)	231, 317, 348, 362, 365, 403, 679, 738
AclI	AACGTT	2 cut(s)	528, 699
AcoI	YGGCCR	3 cut(s)	640, 676, 724
AfiI	CCNNNNNNNGG	3 cut(s)	351, 567, 597
AgsI	TTSAA	2 cut(s)	214, 658
AluBI	AGCT	4 cut(s)	45, 194, 228, 422
AluI	AGCT	4 cut(s)	45, 194, 228, 422
Alw21I	GWGCWC	2 cut(s)	47, 203
Alw26I	GTCTC	1 cut(s)	694
Aor13HI	TCCGGA	1 cut(s)	125
AoxI	GGCC	5 cut(s)	607, 640, 676, 724, 739
ApeKI	GCWGC	3 cut(s)	191, 228, 367
AspS9I	GGNCC	2 cut(s)	607, 717
AsuC2I	CCSGG	1 cut(s)	282
AsuHPI	GGTGA	3 cut(s)	83, 128, 554
AvaII	GGWCC	1 cut(s)	717
BalI	TGGCCA	1 cut(s)	726
BanI	GGYRCC	1 cut(s)	451
BanII	GRGCYC	2 cut(s)	47, 287
BbsI	GAAGAC	2 cut(s)	23, 269
Bbv12I	GWGCWC	2 cut(s)	47, 203
BbvI	GCAGC	3 cut(s)	203, 215, 379
BccI	CCATC	2 cut(s)	401, 569
BceAI	ACGGC	3 cut(s)	204, 655, 691
BclI	TGATCA	1 cut(s)	519
BcnI	CCSGG	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	694
BfmI	CTRYAG	1 cut(s)	743
BisI	GCNGC	6 cut(s)	192, 229, 365, 368, 679, 739
BlpI	GCTNAGC	1 cut(s)	224
BlsI	GCNGC	6 cut(s)	193, 230, 366, 369, 680, 740
Bme1390I	CCNGG	1 cut(s)	282
Bme18I	GGWCC	1 cut(s)	717
BmgT120I	GGNCC	2 cut(s)	607, 717
BmiI	GGNNCC	2 cut(s)	453, 608
BmrFI	CCNGG	1 cut(s)	282
BmrI	ACTGGG	1 cut(s)	613
BmsI	GCATC	2 cut(s)	79, 109
BmuI	ACTGGG	1 cut(s)	613
BpiI	GAAGAC	2 cut(s)	23, 269
Bpu1102I	GCTNAGC	1 cut(s)	224
BpuMI	CCSGG	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	169
BsaWI	WCCGGW	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	3 cut(s)	351, 567, 597
Bse118I	RCCGGY	2 cut(s)	344, 710
Bse1I	ACTGG	3 cut(s)	583, 608, 620
BseAI	TCCGGA	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	169
BseLI	CCNNNNNNNGG	3 cut(s)	351, 567, 597
BseMII	CTCAG	2 cut(s)	188, 215
BseNI	ACTGG	3 cut(s)	583, 608, 620
BseRI	GAGGAG	1 cut(s)	81
BseX3I	CGGCCG	1 cut(s)	676
BseXI	GCAGC	3 cut(s)	203, 215, 379
BseYI	CCCAGC	1 cut(s)	387
Bsh1285I	CGRYCG	2 cut(s)	679, 687
BshFI	GGCC	5 cut(s)	609, 642, 678, 726, 741
BshNI	GGYRCC	1 cut(s)	451
BsiEI	CGRYCG	2 cut(s)	679, 687
BsiHKAI	GWGCWC	2 cut(s)	47, 203
BsiSI	CCGG	4 cut(s)	126, 281, 345, 711
BslI	CCNNNNNNNGG	3 cut(s)	351, 567, 597
BsmAI	GTCTC	1 cut(s)	694
BsmBI	CGTCTC	1 cut(s)	694
BsnI	GGCC	5 cut(s)	609, 642, 678, 726, 741
Bsp1286I	GDGCHC	3 cut(s)	47, 203, 287
Bsp13I	TCCGGA	1 cut(s)	125
Bsp143I	GATC	3 cut(s)	379, 519, 684
Bsp1720I	GCTNAGC	1 cut(s)	224
BspACI	CCGC	8 cut(s)	231, 317, 348, 362, 365, 403, 679, 738
BspANI	GGCC	5 cut(s)	609, 642, 678, 726, 741
BspCNI	CTCAG	2 cut(s)	189, 216
BspEI	TCCGGA	1 cut(s)	125
BspLI	GGNNCC	2 cut(s)	453, 608
BspT107I	GGYRCC	1 cut(s)	451
BsrFI	RCCGGY	2 cut(s)	344, 710
BsrI	ACTGG	3 cut(s)	583, 608, 620
BssAI	RCCGGY	2 cut(s)	344, 710
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	3 cut(s)	379, 519, 684
BssT1I	CCWWGG	1 cut(s)	169
Bst4CI	ACNGT	4 cut(s)	77, 210, 494, 747
BstC8I	GCNNGC	4 cut(s)	317, 346, 584, 712
BstDEI	CTNAG	2 cut(s)	197, 224
BstKTI	GATC	3 cut(s)	382, 522, 687
BstMAI	GTCTC	1 cut(s)	694
BstMBI	GATC	3 cut(s)	379, 519, 684
BstMCI	CGRYCG	2 cut(s)	679, 687
BstMWI	GCNNNNNNNGC	2 cut(s)	354, 678
BstNSI	RCATGY	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	280
BstSFI	CTRYAG	1 cut(s)	743
BstV1I	GCAGC	3 cut(s)	203, 215, 379
BstV2I	GAAGAC	2 cut(s)	23, 269
BstXI	CCANNNNNNTGG	1 cut(s)	176
BstZI	CGGCCG	1 cut(s)	676
BsuRI	GGCC	5 cut(s)	609, 642, 678, 726, 741
BtsIMutI	CAGTG	1 cut(s)	206
Cac8I	GCNNGC	4 cut(s)	317, 346, 584, 712
Cfr10I	RCCGGY	2 cut(s)	344, 710
Cfr13I	GGNCC	2 cut(s)	607, 717
CseI	GACGC	1 cut(s)	111
CviAII	CATG	3 cut(s)	95, 551, 592
DdeI	CTNAG	2 cut(s)	197, 224
DpnI	GATC	3 cut(s)	381, 521, 686
DpnII	GATC	3 cut(s)	379, 519, 684
EaeI	YGGCCR	3 cut(s)	640, 676, 724
EagI	CGGCCG	1 cut(s)	676
Ecl136II	GAGCTC	1 cut(s)	45
EclXI	CGGCCG	1 cut(s)	676
Eco130I	CCWWGG	1 cut(s)	169
Eco24I	GRGCYC	2 cut(s)	47, 287
Eco47I	GGWCC	1 cut(s)	717
Eco52I	CGGCCG	1 cut(s)	676
Eco53kI	GAGCTC	1 cut(s)	45
EcoICRI	GAGCTC	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	169
EcoT38I	GRGCYC	2 cut(s)	47, 287
ErhI	CCWWGG	1 cut(s)	169
Esp3I	CGTCTC	1 cut(s)	694
FaeI	CATG	3 cut(s)	98, 554, 595
FalI	AAGNNNNNCTT	2 cut(s)	439, 471
FatI	CATG	3 cut(s)	94, 550, 591
FauI	CCCGC	3 cut(s)	224, 324, 369
FbaI	TGATCA	1 cut(s)	519
Fnu4HI	GCNGC	6 cut(s)	192, 229, 365, 368, 679, 739
FriOI	GRGCYC	2 cut(s)	47, 287
Fsp4HI	GCNGC	6 cut(s)	192, 229, 365, 368, 679, 739
GluI	GCNGC	6 cut(s)	192, 229, 365, 368, 679, 739
GsaI	CCCAGC	1 cut(s)	391
HaeIII	GGCC	5 cut(s)	609, 642, 678, 726, 741
HapII	CCGG	4 cut(s)	126, 281, 345, 711
HgaI	GACGC	1 cut(s)	111
Hin1II	CATG	3 cut(s)	98, 554, 595
HinfI	GANTC	1 cut(s)	480
HpaII	CCGG	4 cut(s)	126, 281, 345, 711
HphI	GGTGA	3 cut(s)	83, 128, 554
Hpy188I	TCNGA	4 cut(s)	198, 336, 479, 752
Hpy188III	TCNNGA	2 cut(s)	126, 573
Hpy99I	CGWCG	1 cut(s)	677
HpyAV	CCTTC	2 cut(s)	341, 441
HpyCH4III	ACNGT	4 cut(s)	77, 210, 494, 747
HpyCH4IV	ACGT	2 cut(s)	528, 699
HpyCH4V	TGCA	3 cut(s)	92, 357, 554
HpyF10VI	GCNNNNNNNGC	2 cut(s)	354, 678
HpyF3I	CTNAG	2 cut(s)	197, 224
HpySE526I	ACGT	2 cut(s)	528, 699
Hsp92II	CATG	3 cut(s)	98, 554, 595
Kpn2I	TCCGGA	1 cut(s)	125
KroI	GCCGGC	2 cut(s)	344, 710
KroNI	GCCGGC	2 cut(s)	346, 712
Ksp22I	TGATCA	1 cut(s)	519
Kzo9I	GATC	3 cut(s)	379, 519, 684
Lsp1109I	GCAGC	3 cut(s)	203, 215, 379
LweI	GCATC	2 cut(s)	79, 109
MaeII	ACGT	2 cut(s)	528, 699
MaeIII	GTNAC	6 cut(s)	71, 260, 295, 494, 623, 661
MalI	GATC	3 cut(s)	381, 521, 686
MboI	GATC	3 cut(s)	379, 519, 684
MboII	GAAGA	3 cut(s)	23, 269, 388
MhlI	GDGCHC	3 cut(s)	47, 203, 287
MlsI	TGGCCA	1 cut(s)	726
MluCI	AATT	4 cut(s)	6, 307, 426, 508
MluNI	TGGCCA	1 cut(s)	726
MmeI	TCCRAC	2 cut(s)	511, 717
MnlI	CCTC	7 cut(s)	59, 62, 107, 464, 527, 644, 659
Mox20I	TGGCCA	1 cut(s)	726
MroI	TCCGGA	1 cut(s)	125
MroNI	GCCGGC	2 cut(s)	344, 710
MscI	TGGCCA	1 cut(s)	726
MseI	TTAA	2 cut(s)	461, 507
Msp20I	TGGCCA	1 cut(s)	726
MspA1I	CMGCKG	2 cut(s)	403, 738
MspI	CCGG	4 cut(s)	126, 281, 345, 711
MspR9I	CCNGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	2 cut(s)	354, 678
NaeI	GCCGGC	2 cut(s)	346, 712
NciI	CCSGG	1 cut(s)	282
NdeII	GATC	3 cut(s)	379, 519, 684
NgoMIV	GCCGGC	2 cut(s)	344, 710
NlaIII	CATG	3 cut(s)	98, 554, 595
NlaIV	GGNNCC	2 cut(s)	453, 608
NmuCI	GTSAC	5 cut(s)	71, 260, 295, 494, 661
NspI	RCATGY	1 cut(s)	98
PdiI	GCCGGC	2 cut(s)	346, 712
PfeI	GAWTC	1 cut(s)	480
PkrI	GCNGC	6 cut(s)	193, 230, 366, 369, 680, 740
Ple19I	CGATCG	1 cut(s)	687
Psp124BI	GAGCTC	1 cut(s)	47
Psp1406I	AACGTT	2 cut(s)	528, 699
PspFI	CCCAGC	1 cut(s)	387
PspN4I	GGNNCC	2 cut(s)	453, 608
PspPI	GGNCC	2 cut(s)	607, 717
PvuI	CGATCG	1 cut(s)	687
SacI	GAGCTC	1 cut(s)	47
SaqAI	TTAA	2 cut(s)	461, 507
SatI	GCNGC	6 cut(s)	192, 229, 365, 368, 679, 739
Sau3AI	GATC	3 cut(s)	379, 519, 684
Sau96I	GGNCC	2 cut(s)	607, 717
ScrFI	CCNGG	1 cut(s)	282
SduI	GDGCHC	3 cut(s)	47, 203, 287
SfaNI	GCATC	2 cut(s)	79, 109
SfcI	CTRYAG	1 cut(s)	743
SinI	GGWCC	1 cut(s)	717
Sse9I	AATT	4 cut(s)	6, 307, 426, 508
SsiI	CCGC	8 cut(s)	231, 317, 348, 362, 365, 403, 679, 738
SstI	GAGCTC	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	280
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	4 cut(s)	77, 210, 494, 747
TaiI	ACGT	2 cut(s)	531, 702
TaqI	TCGA	1 cut(s)	378
TasI	AATT	4 cut(s)	6, 307, 426, 508
TauI	GCSGC	3 cut(s)	367, 681, 741
TfiI	GAWTC	1 cut(s)	480
Tru1I	TTAA	2 cut(s)	461, 507
Tru9I	TTAA	2 cut(s)	461, 507
TscAI	CASTG	1 cut(s)	213
TseFI	GTSAC	5 cut(s)	71, 260, 295, 494, 661
TseI	GCWGC	3 cut(s)	191, 228, 367
Tsp45I	GTSAC	5 cut(s)	71, 260, 295, 494, 661
TspDTI	ATGAA	1 cut(s)	539
TspRI	CASTG	1 cut(s)	213
VpaK11BI	GGWCC	1 cut(s)	717
XceI	RCATGY	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.