Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003982

Physical Location & Seq

Genomic Coordinates Reverse (-)

5696773 .. 5698271

Gene Structure 1499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006260

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGGGGATGCTTGCATTCACATTATCCATCCTATAATGAAAATGGCTTCTGCTGTGTTTTTCTTGGTGGGTCTTCTTGCAATGGTGACCTGTGCGCATGCTTATGGTGGTGGTGGTTGGGTTAACGCTCGTGCCACTTTCTATGGAGGTGGTGATGCTTCTGGAACAATGGGTGGTGCTTGTGGGTATGGAAACCTCTACAGCCAGGGGTATGGTACAAACACAGCTGCTCTGAGCACTGCTCTGTTCAACAATGGGCTGGGATGTGGGTCTTGCTATGAAATTAGGTGTGTGAATGACCCAAAATGGTGCCTTCCTGGCTCCATTGTGGTCACAGCCACTAATTTTTGCCCTCCAAACAATGCCCTACCTAACAATGCTGGGGGATGGTGCAACCCTCCTCAGCATCACTTTGACCTCTCTCAACCTGTATTCCAGCACATTGCTCAATACAAAGCTGGAGTTGTCCCTGTTTCTTACAGAAGGGTACCCTGCAGCAGAAGGGGAGGCATCAGATTCACCATCAATGGCCACTCCTACTTCAACCTGGTTTTGATCACAAACGTTGGTGGTGCTGGTGATGTGCACTCTGTTTCAGTCAAAGGGTCCAGAACCGGTTGGCAACCAATGTCCAGAAACTGGGGGCAAAACTGGCAAAGCAACTCATATCTGAATGGGCAAGCCCTTTCCTTCAAGGTCACAACCAGTGATGGCCGCACTGTGGTGTCCTACAATGCTGCCCCAGCTCGTTGGTCCTTTGGCCAGACCTTCAGTGGTGCCCAGTTCCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

264

Amino Acids

28.04

Weight (kDa)

9.27

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	44 - 167	1e-09	EXPB1-like domain 1
DPBB_1	PF03330	75 - 160	1e-23	Lytic transglycolase
Expansin_C	PF01357	171 - 248	1.1e-33	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003982)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31140 FvH4_5g14760 FvH4_5g14760
malus_domestica	MD06G1195100.v1.1 MD13G1070200.v1.1 MD14G1202100.v1.1 MD16G1070600.v1.1
prunus_persica	Prupe.1G276700_v2.0.a1 Prupe.5G195200_v2.0.a1
pyrus_communis	pycom06g17260 pycom13g06300 pycom14g16740 pycom16g06140
rosa_chinensis	RchiOBHm_Chr4g0439541 RchiOBHm_Chr7g0181621
rosa_laevigata	RLG00000005178 RLG00000006260
rosa_multiflora	Rmu_sc0000988.1_g000016 Rmu_sc0007276.1_g000013
rosa_roxburghii	Rroxscaffold_3G00271840 Rroxscaffold_5G00380460
rosa_rugosa	Rorug04G0319400 Rorug06G0442600 Rorug06G0442600
rosa_samantha	Rh4AG370600 Rh4BG382400 Rh4CG397000 Rh7AG045000 Rh7BG044000 Rh7BG044100 Rh7CG045700
rosa_wichuraiana	Rw4G031590 Rw7G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	96
Acc65I	GGTACC	1 cut(s)	487
AccB1I	GGYRCC	3 cut(s)	309, 487, 776
AccB7I	CCANNNNNTGG	1 cut(s)	639
AciI	CCGC	2 cut(s)	715, 787
AclI	AACGTT	1 cut(s)	564
AcoI	YGGCCR	3 cut(s)	529, 712, 760
AcuI	CTGAAG	1 cut(s)	754
AfaI	GTAC	2 cut(s)	217, 489
AfiI	CCNNNNNNNGG	2 cut(s)	639, 721
AgeI	ACCGGT	1 cut(s)	614
AgsI	TTSAA	3 cut(s)	250, 544, 694
AjnI	CCWGG	3 cut(s)	204, 316, 546
AleI	CACNNNNGTG	1 cut(s)	722
AluBI	AGCT	3 cut(s)	227, 458, 746
AluI	AGCT	3 cut(s)	227, 458, 746
Alw21I	GWGCWC	2 cut(s)	239, 588
Alw44I	GTGCAC	1 cut(s)	584
AlwNI	CAGNNNCTG	1 cut(s)	639
AoxI	GGCC	3 cut(s)	529, 712, 760
ApaLI	GTGCAC	1 cut(s)	584
ApeKI	GCWGC	3 cut(s)	227, 495, 737
AsiGI	ACCGGT	1 cut(s)	614
Asp718I	GGTACC	1 cut(s)	487
AspLEI	GCGC	1 cut(s)	97
AspS9I	GGNCC	2 cut(s)	606, 753
AsuHPI	GGTGA	4 cut(s)	97, 164, 511, 590
AvaII	GGWCC	2 cut(s)	606, 753
BaeGI	GKGCMC	2 cut(s)	588, 781
BalI	TGGCCA	2 cut(s)	531, 762
BanI	GGYRCC	3 cut(s)	309, 487, 776
BauI	CACGAG	1 cut(s)	129
BbsI	GAAGAC	1 cut(s)	65
Bbv12I	GWGCWC	2 cut(s)	239, 588
BbvCI	CCTCAGC	1 cut(s)	402
BbvI	GCAGC	3 cut(s)	214, 507, 724
BccI	CCATC	4 cut(s)	36, 381, 530, 704
BciT130I	CCWGG	3 cut(s)	206, 318, 548
BclI	TGATCA	1 cut(s)	555
BfmI	CTRYAG	2 cut(s)	199, 493
BglI	GCCNNNNNGGC	1 cut(s)	318
BisI	GCNGC	4 cut(s)	228, 496, 715, 738
BlsI	GCNGC	4 cut(s)	229, 497, 716, 739
Bme1390I	CCNGG	3 cut(s)	206, 318, 548
Bme18I	GGWCC	2 cut(s)	606, 753
BmgT120I	GGNCC	2 cut(s)	606, 753
BmiI	GGNNCC	5 cut(s)	311, 322, 489, 607, 778
BmrFI	CCNGG	3 cut(s)	206, 318, 548
BmrI	ACTGGG	2 cut(s)	649, 775
BmsI	GCATC	3 cut(s)	145, 415, 519
BmuI	ACTGGG	2 cut(s)	649, 775
BpiI	GAAGAC	1 cut(s)	65
BplI	GAGNNNNNCTC	2 cut(s)	226, 258
BpmI	CTGGAG	1 cut(s)	480
Bpu10I	CCTNAGC	1 cut(s)	402
BsaJI	CCNNGG	1 cut(s)	205
BsaWI	WCCGGW	1 cut(s)	614
Bsc4I	CCNNNNNNNGG	2 cut(s)	639, 721
Bse118I	RCCGGY	1 cut(s)	614
Bse1I	ACTGG	4 cut(s)	644, 656, 705, 781
Bse3DI	GCAATG	2 cut(s)	87, 441
BseBI	CCWGG	3 cut(s)	206, 318, 548
BseDI	CCNNGG	1 cut(s)	205
BseGI	GGATG	4 cut(s)	13, 28, 269, 392
BseLI	CCNNNNNNNGG	2 cut(s)	639, 721
BseMI	GCAATG	2 cut(s)	87, 441
BseMII	CTCAG	2 cut(s)	224, 416
BseNI	ACTGG	4 cut(s)	644, 656, 705, 781
BseRI	GAGGAG	1 cut(s)	390
BseSI	GKGCMC	2 cut(s)	588, 781
BseXI	GCAGC	3 cut(s)	214, 507, 724
BseYI	CCCAGC	3 cut(s)	259, 380, 742
BshFI	GGCC	3 cut(s)	531, 714, 762
BshNI	GGYRCC	3 cut(s)	309, 487, 776
BshTI	ACCGGT	1 cut(s)	614
BsiHKAI	GWGCWC	2 cut(s)	239, 588
BsiSI	CCGG	1 cut(s)	615
BslFI	GGGAC	1 cut(s)	452
BslI	CCNNNNNNNGG	2 cut(s)	639, 721
BsmFI	GGGAC	1 cut(s)	452
BsmI	GAATGC	1 cut(s)	15
BsnI	GGCC	3 cut(s)	531, 714, 762
Bsp1286I	GDGCHC	3 cut(s)	239, 588, 781
Bsp143I	GATC	1 cut(s)	555
BspACI	CCGC	2 cut(s)	715, 787
BspANI	GGCC	3 cut(s)	531, 714, 762
BspCNI	CTCAG	2 cut(s)	225, 415
BspLI	GGNNCC	5 cut(s)	311, 322, 489, 607, 778
BspMAI	CTGCAG	1 cut(s)	497
BspT107I	GGYRCC	3 cut(s)	309, 487, 776
BsrDI	GCAATG	2 cut(s)	87, 441
BsrFI	RCCGGY	1 cut(s)	614
BsrI	ACTGG	4 cut(s)	644, 656, 705, 781
BssAI	RCCGGY	1 cut(s)	614
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	1 cut(s)	555
BssSI	CACGAG	1 cut(s)	129
Bst2BI	CACGAG	1 cut(s)	129
Bst2UI	CCWGG	3 cut(s)	206, 318, 548
Bst4CI	ACNGT	1 cut(s)	721
BstC8I	GCNNGC	3 cut(s)	13, 99, 681
BstDEI	CTNAG	2 cut(s)	233, 402
BstEII	GGTNACC	1 cut(s)	85
BstF5I	GGATG	4 cut(s)	13, 28, 269, 392
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	1 cut(s)	558
BstMBI	GATC	1 cut(s)	555
BstMWI	GCNNNNNNNGC	3 cut(s)	318, 652, 743
BstNI	CCWGG	3 cut(s)	206, 318, 548
BstNSI	RCATGY	1 cut(s)	101
BstPI	GGTNACC	1 cut(s)	85
BstSCI	CCNGG	3 cut(s)	204, 316, 546
BstSFI	CTRYAG	2 cut(s)	199, 493
BstSLI	GKGCMC	2 cut(s)	588, 781
BstV1I	GCAGC	3 cut(s)	214, 507, 724
BstV2I	GAAGAC	1 cut(s)	65
BstXI	CCANNNNNNTGG	2 cut(s)	212, 750
BsuRI	GGCC	3 cut(s)	531, 714, 762
BtsCI	GGATG	4 cut(s)	13, 28, 269, 392
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	4 cut(s)	237, 712, 717, 778
Cac8I	GCNNGC	3 cut(s)	13, 99, 681
CaiI	CAGNNNCTG	1 cut(s)	639
CfoI	GCGC	1 cut(s)	97
Cfr10I	RCCGGY	1 cut(s)	614
Cfr13I	GGNCC	2 cut(s)	606, 753
CsiI	ACCWGGT	1 cut(s)	546
Csp6I	GTAC	2 cut(s)	216, 488
CspAI	ACCGGT	1 cut(s)	614
CviAII	CATG	1 cut(s)	98
CviQI	GTAC	2 cut(s)	216, 488
DdeI	CTNAG	2 cut(s)	233, 402
DpnI	GATC	1 cut(s)	557
DpnII	GATC	1 cut(s)	555
EaeI	YGGCCR	3 cut(s)	529, 712, 760
Eco47I	GGWCC	2 cut(s)	606, 753
Eco57I	CTGAAG	1 cut(s)	754
Eco91I	GGTNACC	1 cut(s)	85
EcoO65I	GGTNACC	1 cut(s)	85
EcoRII	CCWGG	3 cut(s)	204, 316, 546
FaeI	CATG	1 cut(s)	101
FaiI	YATR	8 cut(s)	35, 99, 105, 144, 189, 213, 279, 667
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	1 cut(s)	97
FbaI	TGATCA	1 cut(s)	555
Fnu4HI	GCNGC	4 cut(s)	228, 496, 715, 738
FokI	GGATG	4 cut(s)	15, 20, 276, 399
Fsp4HI	GCNGC	4 cut(s)	228, 496, 715, 738
FspAI	RTGCGCAY	1 cut(s)	96
FspI	TGCGCA	1 cut(s)	96
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	4 cut(s)	228, 496, 715, 738
GsaI	CCCAGC	3 cut(s)	263, 384, 746
GsuI	CTGGAG	1 cut(s)	480
HaeIII	GGCC	3 cut(s)	531, 714, 762
HapII	CCGG	1 cut(s)	615
HhaI	GCGC	1 cut(s)	97
Hin1II	CATG	1 cut(s)	101
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	1 cut(s)	516
HpaI	GTTAAC	1 cut(s)	124
HpaII	CCGG	1 cut(s)	615
HphI	GGTGA	4 cut(s)	97, 164, 511, 590
Hpy166II	GTNNAC	2 cut(s)	124, 586
Hpy188I	TCNGA	3 cut(s)	234, 515, 672
Hpy188III	TCNNGA	3 cut(s)	162, 609, 633
Hpy8I	GTNNAC	2 cut(s)	124, 586
HpyAV	CCTTC	5 cut(s)	323, 477, 495, 700, 778
HpyCH4III	ACNGT	1 cut(s)	721
HpyCH4IV	ACGT	1 cut(s)	564
HpyCH4V	TGCA	5 cut(s)	15, 80, 393, 495, 586
HpyF10VI	GCNNNNNNNGC	3 cut(s)	318, 652, 743
HpyF3I	CTNAG	2 cut(s)	233, 402
HpySE526I	ACGT	1 cut(s)	564
Hsp92II	CATG	1 cut(s)	101
HspAI	GCGC	1 cut(s)	95
KpnI	GGTACC	1 cut(s)	491
Ksp22I	TGATCA	1 cut(s)	555
KspAI	GTTAAC	1 cut(s)	124
Kzo9I	GATC	1 cut(s)	555
LmnI	GCTCC	1 cut(s)	326
Lsp1109I	GCAGC	3 cut(s)	214, 507, 724
LweI	GCATC	3 cut(s)	145, 415, 519
MabI	ACCWGGT	1 cut(s)	546
MaeII	ACGT	1 cut(s)	564
MaeIII	GTNAC	3 cut(s)	85, 331, 697
MalI	GATC	1 cut(s)	557
MboI	GATC	1 cut(s)	555
MboII	GAAGA	1 cut(s)	65
MhlI	GDGCHC	3 cut(s)	239, 588, 781
MlsI	TGGCCA	2 cut(s)	531, 762
MluCI	AATT	2 cut(s)	282, 343
MluNI	TGGCCA	2 cut(s)	531, 762
MnlI	CCTC	7 cut(s)	140, 206, 363, 408, 411, 428, 500
Mox20I	TGGCCA	2 cut(s)	531, 762
MscI	TGGCCA	2 cut(s)	531, 762
MseI	TTAA	1 cut(s)	123
MslI	CAYNNNNRTG	2 cut(s)	102, 722
Msp20I	TGGCCA	2 cut(s)	531, 762
MspA1I	CMGCKG	1 cut(s)	227
MspI	CCGG	1 cut(s)	615
MspR9I	CCNGG	3 cut(s)	206, 318, 548
Mva1269I	GAATGC	1 cut(s)	15
MvaI	CCWGG	3 cut(s)	206, 318, 548
MwoI	GCNNNNNNNGC	3 cut(s)	318, 652, 743
NdeII	GATC	1 cut(s)	555
NlaIII	CATG	1 cut(s)	101
NlaIV	GGNNCC	5 cut(s)	311, 322, 489, 607, 778
NmuCI	GTSAC	3 cut(s)	85, 331, 697
NsbI	TGCGCA	1 cut(s)	96
NspI	RCATGY	1 cut(s)	101
OliI	CACNNNNGTG	1 cut(s)	722
PaeI	GCATGC	1 cut(s)	101
PctI	GAATGC	1 cut(s)	15
PfeI	GAWTC	1 cut(s)	516
PflMI	CCANNNNNTGG	1 cut(s)	639
PinAI	ACCGGT	1 cut(s)	614
PkrI	GCNGC	4 cut(s)	229, 497, 716, 739
Psp1406I	AACGTT	1 cut(s)	564
Psp6I	CCWGG	3 cut(s)	204, 316, 546
PspEI	GGTNACC	1 cut(s)	85
PspFI	CCCAGC	3 cut(s)	259, 380, 742
PspGI	CCWGG	3 cut(s)	204, 316, 546
PspN4I	GGNNCC	5 cut(s)	311, 322, 489, 607, 778
PspPI	GGNCC	2 cut(s)	606, 753
PstI	CTGCAG	1 cut(s)	497
PstNI	CAGNNNCTG	1 cut(s)	639
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	2 cut(s)	217, 489
RsaNI	GTAC	2 cut(s)	216, 488
RseI	CAYNNNNRTG	2 cut(s)	102, 722
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	4 cut(s)	228, 496, 715, 738
Sau3AI	GATC	1 cut(s)	555
Sau96I	GGNCC	2 cut(s)	606, 753
ScrFI	CCNGG	3 cut(s)	206, 318, 548
SduI	GDGCHC	3 cut(s)	239, 588, 781
SexAI	ACCWGGT	1 cut(s)	546
SfaNI	GCATC	3 cut(s)	145, 415, 519
SfcI	CTRYAG	2 cut(s)	199, 493
SinI	GGWCC	2 cut(s)	606, 753
SmiMI	CAYNNNNRTG	2 cut(s)	102, 722
SphI	GCATGC	1 cut(s)	101
Sse9I	AATT	2 cut(s)	282, 343
SsiI	CCGC	2 cut(s)	715, 787
StyD4I	CCNGG	3 cut(s)	204, 316, 546
TaaI	ACNGT	1 cut(s)	721
TaiI	ACGT	1 cut(s)	567
TasI	AATT	2 cut(s)	282, 343
TauI	GCSGC	1 cut(s)	717
TfiI	GAWTC	1 cut(s)	516
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	4 cut(s)	244, 712, 724, 778
TseFI	GTSAC	3 cut(s)	85, 331, 697
TseI	GCWGC	3 cut(s)	227, 495, 737
Tsp45I	GTSAC	3 cut(s)	85, 331, 697
TspDTI	ATGAA	2 cut(s)	53, 294
TspRI	CASTG	4 cut(s)	244, 712, 724, 778
Van91I	CCANNNNNTGG	1 cut(s)	639
VneI	GTGCAC	1 cut(s)	584
VpaK11BI	GGWCC	2 cut(s)	606, 753
XceI	RCATGY	1 cut(s)	101
XcmI	CCANNNNNNNNNTGG	1 cut(s)	770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.