Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003982

Physical Location & Seq

Genomic Coordinates Forward (+)

4081007 .. 4082192

Gene Structure 1186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g06300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCGGGTCTTCTTGCAATGTTGGTGGCGTCTGCGCATGCTTACGGTGGAGGCGGGTGGGTTAATGCTCGCGCCACTTTCTACGGCGGCGGTGACGCTTCTGGCACAATGGGTGGAGCTTGTGGTTATGGCAACCTCTACAGCCAGGGGTACGGAACCAACACGGCCGCGCTGAGCACTGCTCTGTTCAACAATGGGCTGGGGTGCGGATCTTGCTATGAGATTAGGTGTGTGAACGACCCCAAATGGTGTCTGCCGGGCTCCATTGTGGTCACCGCCACCAATTTCTGCCCGCCGAACAACGCCCTCCCCAACAATGCCGGCGGCTGGTGCAACCCTCCCCAGCACCACTTCGACCTCTCTCAGCCTGTCTTCCAGCACATTGCCCAATACAAAGCCGGAGTTGTGCCTGTGTCCTACAGAAGGGTACCCTGCATGAGAAGGGGAGGCATCAGATTCACAATCAACGGACACTCCTACTTCAACCTGGTCCTTATCACAAACGTTGGTGGTGCCGGTGATGTGCACTCTGTTTCCGTCAAAGGGTCCAGAACTGGCTGGCAAGCAATGTCCCGAAACTGGGGGCAAAACTGGCAATCCAACAGCTACCTCAACGGCCAAGCTCTCTCTTTCAAGGTCACAACAAGTGACGGCAGGACTGTTGTGTCCTACAATGCTGCCCCTGCTGGATGGTCCTTTGGGCAGACCTACAGCGGTGCCCAACTCCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

244

Amino Acids

25.68

Weight (kDa)

9.3

Isoelectric Point (pI)

32.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003982)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31140 FvH4_5g14760 FvH4_5g14760
malus_domestica	MD06G1195100.v1.1 MD13G1070200.v1.1 MD14G1202100.v1.1 MD16G1070600.v1.1
prunus_persica	Prupe.1G276700_v2.0.a1 Prupe.5G195200_v2.0.a1
pyrus_communis	pycom06g17260 pycom13g06300 pycom14g16740 pycom16g06140
rosa_chinensis	RchiOBHm_Chr4g0439541 RchiOBHm_Chr7g0181621
rosa_laevigata	RLG00000005178 RLG00000006260
rosa_multiflora	Rmu_sc0000988.1_g000016 Rmu_sc0007276.1_g000013
rosa_roxburghii	Rroxscaffold_3G00271840 Rroxscaffold_5G00380460
rosa_rugosa	Rorug04G0319400 Rorug06G0442600 Rorug06G0442600
rosa_samantha	Rh4AG370600 Rh4BG382400 Rh4CG397000 Rh7AG045000 Rh7BG044000 Rh7BG044100 Rh7CG045700
rosa_wichuraiana	Rw4G031590 Rw7G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	664
Acc16I	TGCGCA	1 cut(s)	36
Acc65I	GGTACC	1 cut(s)	427
AccB1I	GGYRCC	3 cut(s)	427, 512, 716
AccII	CGCG	2 cut(s)	72, 170
AclI	AACGTT	1 cut(s)	504
AclWI	GGATC	1 cut(s)	217
AcoI	YGGCCR	2 cut(s)	165, 616
AcyI	GRCGYC	1 cut(s)	29
AfaI	GTAC	2 cut(s)	152, 429
AfiI	CCNNNNNNNGG	5 cut(s)	327, 423, 543, 579, 580
AgsI	TTSAA	3 cut(s)	190, 484, 634
AjnI	CCWGG	2 cut(s)	144, 486
AluBI	AGCT	3 cut(s)	119, 606, 623
AluI	AGCT	3 cut(s)	119, 606, 623
Alw21I	GWGCWC	2 cut(s)	179, 528
Alw44I	GTGCAC	1 cut(s)	524
AlwI	GGATC	1 cut(s)	217
AoxI	GGCC	2 cut(s)	165, 616
ApaLI	GTGCAC	1 cut(s)	524
ApeKI	GCWGC	1 cut(s)	677
Asp718I	GGTACC	1 cut(s)	427
AspLEI	GCGC	3 cut(s)	37, 74, 172
AspS9I	GGNCC	3 cut(s)	490, 546, 693
AsuC2I	CCSGG	1 cut(s)	258
AsuHPI	GGTGA	3 cut(s)	104, 265, 530
AvaII	GGWCC	3 cut(s)	490, 546, 693
BaeGI	GKGCMC	2 cut(s)	528, 721
BanI	GGYRCC	3 cut(s)	427, 512, 716
BanII	GRGCYC	1 cut(s)	263
BbsI	GAAGAC	2 cut(s)	2, 364
Bbv12I	GWGCWC	2 cut(s)	179, 528
BbvI	GCAGC	1 cut(s)	664
BccI	CCATC	1 cut(s)	684
BceAI	ACGGC	4 cut(s)	100, 180, 631, 667
BciT130I	CCWGG	2 cut(s)	146, 488
BcnI	CCSGG	1 cut(s)	258
BfaI	CTAG	1 cut(s)	730
BfmI	CTRYAG	3 cut(s)	139, 418, 709
BisI	GCNGC	4 cut(s)	88, 168, 325, 678
BlpI	GCTNAGC	1 cut(s)	173
BlsI	GCNGC	4 cut(s)	89, 169, 326, 679
Bme1390I	CCNGG	3 cut(s)	146, 258, 488
Bme18I	GGWCC	3 cut(s)	490, 546, 693
BmgT120I	GGNCC	3 cut(s)	490, 546, 693
BmiI	GGNNCC	6 cut(s)	157, 262, 429, 514, 547, 718
BmrFI	CCNGG	3 cut(s)	146, 258, 488
BmrI	ACTGGG	1 cut(s)	589
BmsI	GCATC	1 cut(s)	459
BmuI	ACTGGG	1 cut(s)	589
BpiI	GAAGAC	2 cut(s)	2, 364
BplI	GAGNNNNNCTC	2 cut(s)	166, 198
Bpu1102I	GCTNAGC	1 cut(s)	173
BpuMI	CCSGG	1 cut(s)	258
BsaHI	GRCGYC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	145
BsaXI	ACNNNNNCTCC	2 cut(s)	458, 488
Bsc4I	CCNNNNNNNGG	5 cut(s)	327, 423, 543, 579, 580
Bse118I	RCCGGY	2 cut(s)	320, 515
Bse1I	ACTGG	3 cut(s)	559, 584, 596
Bse3DI	GCAATG	3 cut(s)	24, 381, 573
BseBI	CCWGG	2 cut(s)	146, 488
BseDI	CCNNGG	1 cut(s)	145
BseGI	GGATG	1 cut(s)	695
BseLI	CCNNNNNNNGG	5 cut(s)	327, 423, 543, 579, 580
BseMI	GCAATG	3 cut(s)	24, 381, 573
BseMII	CTCAG	2 cut(s)	164, 377
BseNI	ACTGG	3 cut(s)	559, 584, 596
BseSI	GKGCMC	2 cut(s)	528, 721
BseX3I	CGGCCG	1 cut(s)	165
BseXI	GCAGC	1 cut(s)	664
BseYI	CCCAGC	2 cut(s)	199, 342
Bsh1236I	CGCG	2 cut(s)	72, 170
Bsh1285I	CGRYCG	1 cut(s)	168
BshFI	GGCC	2 cut(s)	167, 618
BshNI	GGYRCC	3 cut(s)	427, 512, 716
BsiEI	CGRYCG	1 cut(s)	168
BsiHKAI	GWGCWC	2 cut(s)	179, 528
BsiSI	CCGG	4 cut(s)	257, 321, 399, 516
BslFI	GGGAC	1 cut(s)	556
BslI	CCNNNNNNNGG	5 cut(s)	327, 423, 543, 579, 580
BsmFI	GGGAC	1 cut(s)	556
BsnI	GGCC	2 cut(s)	167, 618
Bsp1286I	GDGCHC	4 cut(s)	179, 263, 528, 721
Bsp143I	GATC	1 cut(s)	209
Bsp1720I	GCTNAGC	1 cut(s)	173
BspANI	GGCC	2 cut(s)	167, 618
BspCNI	CTCAG	2 cut(s)	165, 376
BspFNI	CGCG	2 cut(s)	72, 170
BspLI	GGNNCC	6 cut(s)	157, 262, 429, 514, 547, 718
BspPI	GGATC	1 cut(s)	217
BspT107I	GGYRCC	3 cut(s)	427, 512, 716
BsrDI	GCAATG	3 cut(s)	24, 381, 573
BsrFI	RCCGGY	2 cut(s)	320, 515
BsrI	ACTGG	3 cut(s)	559, 584, 596
BssAI	RCCGGY	2 cut(s)	320, 515
BssECI	CCNNGG	1 cut(s)	145
BssMI	GATC	1 cut(s)	209
BssNI	GRCGYC	1 cut(s)	29
Bst2UI	CCWGG	2 cut(s)	146, 488
Bst4CI	ACNGT	2 cut(s)	47, 661
BstACI	GRCGYC	1 cut(s)	29
BstC8I	GCNNGC	6 cut(s)	39, 70, 293, 322, 560, 564
BstDEI	CTNAG	2 cut(s)	173, 363
BstEII	GGTNACC	1 cut(s)	271
BstENI	CCTNNNNNAGG	1 cut(s)	421
BstF5I	GGATG	1 cut(s)	695
BstFNI	CGCG	2 cut(s)	72, 170
BstHHI	GCGC	3 cut(s)	37, 74, 172
BstKTI	GATC	1 cut(s)	212
BstMBI	GATC	1 cut(s)	209
BstMCI	CGRYCG	1 cut(s)	168
BstMWI	GCNNNNNNNGC	4 cut(s)	213, 330, 592, 683
BstNI	CCWGG	2 cut(s)	146, 488
BstNSI	RCATGY	1 cut(s)	41
BstPI	GGTNACC	1 cut(s)	271
BstSCI	CCNGG	3 cut(s)	144, 256, 486
BstSFI	CTRYAG	3 cut(s)	139, 418, 709
BstSLI	GKGCMC	2 cut(s)	528, 721
BstUI	CGCG	2 cut(s)	72, 170
BstV1I	GCAGC	1 cut(s)	664
BstV2I	GAAGAC	2 cut(s)	2, 364
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
BstZI	CGGCCG	1 cut(s)	165
BsuRI	GGCC	2 cut(s)	167, 618
BtsCI	GGATG	1 cut(s)	695
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	177
Cac8I	GCNNGC	6 cut(s)	39, 70, 293, 322, 560, 564
CfoI	GCGC	3 cut(s)	37, 74, 172
Cfr10I	RCCGGY	2 cut(s)	320, 515
Cfr13I	GGNCC	3 cut(s)	490, 546, 693
CseI	GACGC	2 cut(s)	18, 104
CsiI	ACCWGGT	1 cut(s)	486
Csp6I	GTAC	2 cut(s)	151, 428
CspCI	CAANNNNNGTGG	2 cut(s)	6, 41
CviAII	CATG	2 cut(s)	38, 436
CviQI	GTAC	2 cut(s)	151, 428
DdeI	CTNAG	2 cut(s)	173, 363
DpnI	GATC	1 cut(s)	211
DpnII	GATC	1 cut(s)	209
DrdI	GACNNNNNNGTC	1 cut(s)	664
DseDI	GACNNNNNNGTC	1 cut(s)	664
EaeI	YGGCCR	2 cut(s)	165, 616
EagI	CGGCCG	1 cut(s)	165
EclXI	CGGCCG	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	263
Eco47I	GGWCC	3 cut(s)	490, 546, 693
Eco52I	CGGCCG	1 cut(s)	165
Eco91I	GGTNACC	1 cut(s)	271
EcoNI	CCTNNNNNAGG	1 cut(s)	421
EcoO65I	GGTNACC	1 cut(s)	271
EcoRII	CCWGG	2 cut(s)	144, 486
EcoT38I	GRGCYC	1 cut(s)	263
FaeI	CATG	2 cut(s)	41, 439
FaiI	YATR	4 cut(s)	39, 129, 219, 437
FaqI	GGGAC	1 cut(s)	556
FatI	CATG	2 cut(s)	37, 435
FauI	CCCGC	2 cut(s)	47, 300
Fnu4HI	GCNGC	4 cut(s)	88, 168, 325, 678
FokI	GGATG	1 cut(s)	702
FriOI	GRGCYC	1 cut(s)	263
Fsp4HI	GCNGC	4 cut(s)	88, 168, 325, 678
FspBI	CTAG	1 cut(s)	730
FspI	TGCGCA	1 cut(s)	36
GlaI	GCGC	3 cut(s)	36, 73, 171
GluI	GCNGC	4 cut(s)	88, 168, 325, 678
GsaI	CCCAGC	2 cut(s)	203, 346
HaeIII	GGCC	2 cut(s)	167, 618
HapII	CCGG	4 cut(s)	257, 321, 399, 516
HgaI	GACGC	2 cut(s)	18, 104
HhaI	GCGC	3 cut(s)	37, 74, 172
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	2 cut(s)	41, 439
Hin6I	GCGC	3 cut(s)	35, 72, 170
HinP1I	GCGC	3 cut(s)	35, 72, 170
HinfI	GANTC	1 cut(s)	456
HpaII	CCGG	4 cut(s)	257, 321, 399, 516
HphI	GGTGA	3 cut(s)	104, 265, 530
Hpy166II	GTNNAC	2 cut(s)	235, 526
Hpy188I	TCNGA	1 cut(s)	455
Hpy188III	TCNNGA	2 cut(s)	549, 573
Hpy8I	GTNNAC	2 cut(s)	235, 526
HpyAV	CCTTC	2 cut(s)	417, 435
HpyCH4III	ACNGT	2 cut(s)	47, 661
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	4 cut(s)	17, 333, 435, 526
HpyF10VI	GCNNNNNNNGC	4 cut(s)	213, 330, 592, 683
HpyF3I	CTNAG	2 cut(s)	173, 363
HpySE526I	ACGT	1 cut(s)	504
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	2 cut(s)	41, 439
HspAI	GCGC	3 cut(s)	35, 72, 170
KpnI	GGTACC	1 cut(s)	431
KroI	GCCGGC	1 cut(s)	320
KroNI	GCCGGC	1 cut(s)	322
Kzo9I	GATC	1 cut(s)	209
LmnI	GCTCC	2 cut(s)	116, 266
Lsp1109I	GCAGC	1 cut(s)	664
LweI	GCATC	1 cut(s)	459
MabI	ACCWGGT	1 cut(s)	486
MaeI	CTAG	1 cut(s)	730
MaeII	ACGT	1 cut(s)	504
MaeIII	GTNAC	4 cut(s)	92, 271, 637, 647
MalI	GATC	1 cut(s)	211
MboI	GATC	1 cut(s)	209
MboII	GAAGA	1 cut(s)	364
MflI	RGATCY	1 cut(s)	209
MhlI	GDGCHC	4 cut(s)	179, 263, 528, 721
MluCI	AATT	1 cut(s)	283
MmeI	TCCRAC	1 cut(s)	624
MnlI	CCTC	7 cut(s)	44, 146, 317, 348, 368, 440, 620
MroNI	GCCGGC	1 cut(s)	320
MseI	TTAA	1 cut(s)	63
MspA1I	CMGCKG	1 cut(s)	714
MspI	CCGG	4 cut(s)	257, 321, 399, 516
MspR9I	CCNGG	3 cut(s)	146, 258, 488
MvaI	CCWGG	2 cut(s)	146, 488
MvnI	CGCG	2 cut(s)	72, 170
MwoI	GCNNNNNNNGC	4 cut(s)	213, 330, 592, 683
NaeI	GCCGGC	1 cut(s)	322
NciI	CCSGG	1 cut(s)	258
NdeII	GATC	1 cut(s)	209
NgoMIV	GCCGGC	1 cut(s)	320
NlaIII	CATG	2 cut(s)	41, 439
NlaIV	GGNNCC	6 cut(s)	157, 262, 429, 514, 547, 718
NmuCI	GTSAC	4 cut(s)	92, 271, 637, 647
NsbI	TGCGCA	1 cut(s)	36
NspI	RCATGY	1 cut(s)	41
PaeI	GCATGC	1 cut(s)	41
PdiI	GCCGGC	1 cut(s)	322
PfeI	GAWTC	1 cut(s)	456
PkrI	GCNGC	4 cut(s)	89, 169, 326, 679
Psp1406I	AACGTT	1 cut(s)	504
Psp6I	CCWGG	2 cut(s)	144, 486
PspEI	GGTNACC	1 cut(s)	271
PspFI	CCCAGC	2 cut(s)	199, 342
PspGI	CCWGG	2 cut(s)	144, 486
PspN4I	GGNNCC	6 cut(s)	157, 262, 429, 514, 547, 718
PspPI	GGNCC	3 cut(s)	490, 546, 693
PsuI	RGATCY	1 cut(s)	209
RsaI	GTAC	2 cut(s)	152, 429
RsaNI	GTAC	2 cut(s)	151, 428
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	4 cut(s)	88, 168, 325, 678
Sau3AI	GATC	1 cut(s)	209
Sau96I	GGNCC	3 cut(s)	490, 546, 693
ScrFI	CCNGG	3 cut(s)	146, 258, 488
SduI	GDGCHC	4 cut(s)	179, 263, 528, 721
SexAI	ACCWGGT	1 cut(s)	486
SfaNI	GCATC	1 cut(s)	459
SfcI	CTRYAG	3 cut(s)	139, 418, 709
SinI	GGWCC	3 cut(s)	490, 546, 693
SphI	GCATGC	1 cut(s)	41
Sse9I	AATT	1 cut(s)	283
SspMI	CTAG	1 cut(s)	730
StyD4I	CCNGG	3 cut(s)	144, 256, 486
TaaI	ACNGT	2 cut(s)	47, 661
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	1 cut(s)	354
TasI	AATT	1 cut(s)	283
TauI	GCSGC	3 cut(s)	90, 170, 327
TfiI	GAWTC	1 cut(s)	456
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	1 cut(s)	184
TseFI	GTSAC	4 cut(s)	92, 271, 637, 647
TseI	GCWGC	1 cut(s)	677
Tsp45I	GTSAC	4 cut(s)	92, 271, 637, 647
TspGWI	ACGGA	3 cut(s)	168, 483, 526
TspRI	CASTG	1 cut(s)	184
VneI	GTGCAC	1 cut(s)	524
VpaK11BI	GGWCC	3 cut(s)	490, 546, 693
XagI	CCTNNNNNAGG	1 cut(s)	421
XceI	RCATGY	1 cut(s)	41
XspI	CTAG	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.