Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003123

Physical Location & Seq

Genomic Coordinates Forward (+)

25039311 .. 25051756

Gene Structure 12446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g34370.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGATGGGTTCCTCTACGTTGTCGTTTCACAACTCCCTCCTCTCCGCCCGTTGTTCCCCCCTCATCAAAAATGGCGGGACTTCCTTCTCCTCCTCCTCTCCAACCTCAATGTCACTCCTCCACCGTCCCCGCCCTTCTCTCCTCCGCCTCTCTCCAAACGCACCGTTTCGCCTCACCTCCACTCGCACCCCCCGCAATCTCAAACTTCACGCTTCTCACCCAAACCCTCCTCCCCCTTCCTCCTCCACCTCCTCAATCTCAAACGCCGTCGTTTTCACCTCCTTGCTCACCATAGTCCTAGCCGTCGCCAACCGCGTTCTCTACAAGCTCGCGCTCGTCCCCATGAAGAACCACCCCTTCTTTCTCGCCCAATTCACAACCTTTGGTTATGTGGTGATATATTTTTCGATATTGTATGTACGGTACCGTTCTGGGATTGTGACTGATGAAATGCTGAGGCTTCCCAAATCGCGGTTCGTGGCCATCGGGGCATTGGAGGCACTTGGAGTGGCTTCTGGGATGGCTGCTGCAGCCATGCTTCCCGGACCGGCCATACCCATTTTGAGTCAGACGTTTTTGGTGTGGCAGCTGGGTTTTTCTTCTCTTGTCTTGGGAAGAACATACAGACTTAATCAGATTGTTGGCTGTATCCTCGTCGCTGCAGGTGTAGCGCTAGCTGTTGCTAGCGGGAATGATACTGGTCAGATGCTATCTGGAGTCGAGTCTGTGTGGCCATTACTAATGATTGCTTCAAGTGCCTTTCAAGCTGGTGCATCTATAATCAAGGAATTTGTCTTTGTTGATGCTGCAGTCCACTTAAAGGGAAAATCACTTGACATATTTGTTGTCAACTCTTTTGGATCTGGATTTCAGGCTCTTTTTGTACTTATATTTCTACCTTTCTTATCAAATATGAGAGGCATACCATTCACCCAACTTCCTACATATCTAAAAGATGGAGCTGGTTGCTTTCTAAATATGGGAGGTGCTGCATCAGGTTGTAATGGGGCTCCATTGCTTCCACTGCTTTACATAGTTGGCAATCTGTTGTTCAACATATTCTTGCTGAATGTAGTAAAGACTTCCTCGGCAGTTGTTGCTTCTCTCATTGTGATGTTGTCAGTGCCAATCTCGATTTATGTTCTTTCCCTTCCGTTGCCATATCTCCAAGAGGGTGCAACATTGAGCCCGTTTTTCCTCTTTGGTAGTGCGATTCTTGTCTCGGGTCTTATTTTGTACAGCATACCCCAACCTGCTAAGAGTGGTTCTGAAAGTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006857 GO:0006950 GO:0006952 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0010035 GO:0010038 GO:0015711 GO:0015833 GO:0034635 GO:0042221 GO:0042886 GO:0042939 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0051704 GO:0051707 GO:0071702 GO:0071705 GO:0072337 GO:0072348 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRT-like

Protein Analysis

427

Amino Acids

45.29

Weight (kDa)

10.01

Isoelectric Point (pI)

32.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRT-like	PF08627	100 - 406	6.1e-32	CRT-like, chloroquine-resistance transporter-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24460 AT4G24460 AT4G24460 AT4G24460
fragaria_vesca	FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370
malus_domestica	MD02G1042100.v1.1 MD08G1202100.v1.1 MD08G1202700.v1.1 MD08G1202800.v1.1
prunus_persica	Prupe.1G535300_v2.0.a1 Prupe.1G535300_v2.0.a1
pyrus_communis	pycom08g17510
rosa_chinensis	RchiOBHm_Chr7g0234941 RchiOBHm_Chr7g0234951 RchiOBHm_Chr7g0234961
rosa_laevigata	RLG00000001190 RLG00000001191
rosa_multiflora	Rmu_sc0000039.1_g000013 Rmu_sc0000039.1_g000014 Rmu_sc0000768.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226420 Rroxscaffold_3G00226430
rosa_rugosa	Rorug07G0286700
rosa_samantha	Rh7AG441400 Rh7AG441500 Rh7BG414300 Rh7CG462800 Rh7DG431000
rosa_wichuraiana	Rw7G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	653
Acc36I	ACCTGC	2 cut(s)	653, 1261
Acc65I	GGTACC	1 cut(s)	423
AccB1I	GGYRCC	1 cut(s)	423
AccII	CGCG	3 cut(s)	315, 332, 472
AciI	CCGC	8 cut(s)	45, 75, 130, 145, 193, 313, 472, 687
AclWI	GGATC	1 cut(s)	868
AcoI	YGGCCR	3 cut(s)	480, 549, 731
AcsI	RAATTY	1 cut(s)	788
AfaI	GTAC	4 cut(s)	420, 425, 885, 1238
AfeI	AGCGCT	1 cut(s)	672
AfiI	CCNNNNNNNGG	2 cut(s)	471, 820
AgsI	TTSAA	3 cut(s)	753, 764, 1054
AjuI	GAANNNNNNNTTGG	2 cut(s)	458, 490
AluBI	AGCT	5 cut(s)	328, 589, 677, 767, 962
AluI	AGCT	5 cut(s)	328, 589, 677, 767, 962
Alw26I	GTCTC	1 cut(s)	1225
AlwI	GGATC	1 cut(s)	868
Ama87I	CYCGRG	1 cut(s)	1222
Aor51HI	AGCGCT	1 cut(s)	672
AoxI	GGCC	3 cut(s)	480, 549, 731
ApeKI	GCWGC	7 cut(s)	524, 527, 530, 586, 659, 806, 989
ApoI	RAATTY	1 cut(s)	788
Asp718I	GGTACC	1 cut(s)	423
AspLEI	GCGC	2 cut(s)	334, 673
AspS9I	GGNCC	1 cut(s)	545
AsuC2I	CCSGG	1 cut(s)	543
AsuHPI	GGTGA	6 cut(s)	166, 209, 268, 280, 406, 922
AsuNHI	GCTAGC	2 cut(s)	673, 683
AvaI	CYCGRG	1 cut(s)	1222
AvaII	GGWCC	1 cut(s)	545
BalI	TGGCCA	2 cut(s)	482, 733
BanI	GGYRCC	1 cut(s)	423
BanII	GRGCYC	2 cut(s)	1012, 1190
BbvCI	CCTCAGC	1 cut(s)	455
BbvI	GCAGC	7 cut(s)	511, 514, 542, 598, 646, 793, 976
BccI	CCATC	3 cut(s)	491, 514, 950
BceAI	ACGGC	2 cut(s)	251, 287
BciVI	GTATCC	1 cut(s)	659
BcnI	CCSGG	1 cut(s)	543
BcoDI	GTCTC	1 cut(s)	1225
BfaI	CTAG	3 cut(s)	299, 674, 684
BfmI	CTRYAG	3 cut(s)	528, 660, 807
BfoI	RGCGCY	1 cut(s)	674
BfuAI	ACCTGC	2 cut(s)	653, 1261
BfuI	GTATCC	1 cut(s)	659
BglI	GCCNNNNNGGC	1 cut(s)	488
BisI	GCNGC	7 cut(s)	525, 528, 531, 587, 660, 807, 990
BlsI	GCNGC	7 cut(s)	526, 529, 532, 588, 661, 808, 991
Bme1390I	CCNGG	1 cut(s)	543
Bme18I	GGWCC	1 cut(s)	545
BmeT110I	CYCGRG	1 cut(s)	1222
BmgT120I	GGNCC	1 cut(s)	545
BmiI	GGNNCC	3 cut(s)	10, 425, 1011
BmrFI	CCNGG	1 cut(s)	543
BmsI	GCATC	4 cut(s)	696, 782, 793, 1001
BmtI	GCTAGC	2 cut(s)	677, 687
BpmI	CTGGAG	1 cut(s)	735
Bpu10I	CCTNAGC	1 cut(s)	455
BpuMI	CCSGG	1 cut(s)	543
BsaJI	CCNNGG	1 cut(s)	1086
Bsc4I	CCNNNNNNNGG	2 cut(s)	471, 820
Bse118I	RCCGGY	1 cut(s)	547
Bse1I	ACTGG	1 cut(s)	703
Bse3DI	GCAATG	1 cut(s)	1013
BseDI	CCNNGG	1 cut(s)	1086
BseGI	GGATG	1 cut(s)	525
BseLI	CCNNNNNNNGG	2 cut(s)	471, 820
BseMI	GCAATG	1 cut(s)	1013
BseMII	CTCAG	1 cut(s)	446
BseNI	ACTGG	1 cut(s)	703
BseRI	GAGGAG	9 cut(s)	29, 79, 82, 85, 107, 131, 219, 232, 241
BseXI	GCAGC	7 cut(s)	511, 514, 542, 598, 646, 793, 976
BseYI	CCCAGC	1 cut(s)	589
Bsh1236I	CGCG	3 cut(s)	315, 332, 472
BshFI	GGCC	3 cut(s)	482, 551, 733
BshNI	GGYRCC	1 cut(s)	423
BsiHKCI	CYCGRG	1 cut(s)	1222
BsiSI	CCGG	2 cut(s)	543, 548
BslFI	GGGAC	3 cut(s)	91, 111, 323
BslI	CCNNNNNNNGG	2 cut(s)	471, 820
BsmAI	GTCTC	1 cut(s)	1225
BsmFI	GGGAC	3 cut(s)	91, 111, 323
BsnI	GGCC	3 cut(s)	482, 551, 733
BsoBI	CYCGRG	1 cut(s)	1222
Bsp1286I	GDGCHC	2 cut(s)	1012, 1190
Bsp1407I	TGTACA	1 cut(s)	1236
Bsp143I	GATC	1 cut(s)	860
BspACI	CCGC	8 cut(s)	45, 75, 130, 145, 193, 313, 472, 687
BspANI	GGCC	3 cut(s)	482, 551, 733
BspCNI	CTCAG	1 cut(s)	447
BspFNI	CGCG	3 cut(s)	315, 332, 472
BspLI	GGNNCC	3 cut(s)	10, 425, 1011
BspMAI	CTGCAG	3 cut(s)	532, 664, 811
BspMI	ACCTGC	2 cut(s)	653, 1261
BspOI	GCTAGC	2 cut(s)	677, 687
BspPI	GGATC	1 cut(s)	868
BspT107I	GGYRCC	1 cut(s)	423
BsrDI	GCAATG	1 cut(s)	1013
BsrFI	RCCGGY	1 cut(s)	547
BsrGI	TGTACA	1 cut(s)	1236
BsrI	ACTGG	1 cut(s)	703
BssAI	RCCGGY	1 cut(s)	547
BssECI	CCNNGG	1 cut(s)	1086
BssMI	GATC	1 cut(s)	860
Bst4CI	ACNGT	4 cut(s)	125, 165, 423, 428
BstAPI	GCANNNNNTGC	1 cut(s)	1097
BstAUI	TGTACA	1 cut(s)	1236
BstC8I	GCNNGC	3 cut(s)	330, 675, 685
BstDEI	CTNAG	2 cut(s)	455, 1257
BstF5I	GGATG	1 cut(s)	525
BstFNI	CGCG	3 cut(s)	315, 332, 472
BstH2I	RGCGCY	1 cut(s)	674
BstHHI	GCGC	2 cut(s)	334, 673
BstKTI	GATC	1 cut(s)	863
BstMAI	GTCTC	1 cut(s)	1225
BstMBI	GATC	1 cut(s)	860
BstMWI	GCNNNNNNNGC	9 cut(s)	192, 488, 497, 530, 668, 755, 764, 1024, 1097
BstSCI	CCNGG	1 cut(s)	541
BstSFI	CTRYAG	3 cut(s)	528, 660, 807
BstUI	CGCG	3 cut(s)	315, 332, 472
BstV1I	GCAGC	7 cut(s)	511, 514, 542, 598, 646, 793, 976
BstX2I	RGATCY	1 cut(s)	860
BstYI	RGATCY	1 cut(s)	860
BsuI	GTATCC	1 cut(s)	659
BsuRI	GGCC	3 cut(s)	482, 551, 733
BtsCI	GGATG	1 cut(s)	525
BtsI	GCAGTG	1 cut(s)	1022
BtsIMutI	CAGTG	2 cut(s)	1022, 1128
BveI	ACCTGC	2 cut(s)	653, 1261
Cac8I	GCNNGC	3 cut(s)	330, 675, 685
CfoI	GCGC	2 cut(s)	334, 673
Cfr10I	RCCGGY	1 cut(s)	547
Cfr13I	GGNCC	1 cut(s)	545
CpoI	CGGWCCG	1 cut(s)	545
Csp6I	GTAC	4 cut(s)	419, 424, 884, 1237
CspI	CGGWCCG	1 cut(s)	545
CviAII	CATG	2 cut(s)	343, 535
CviQI	GTAC	4 cut(s)	419, 424, 884, 1237
DdeI	CTNAG	2 cut(s)	455, 1257
DpnI	GATC	1 cut(s)	862
DpnII	GATC	1 cut(s)	860
EaeI	YGGCCR	3 cut(s)	480, 549, 731
EciI	GGCGGA	2 cut(s)	34, 134
Eco24I	GRGCYC	2 cut(s)	1012, 1190
Eco47I	GGWCC	1 cut(s)	545
Eco47III	AGCGCT	1 cut(s)	672
Eco88I	CYCGRG	1 cut(s)	1222
EcoT38I	GRGCYC	2 cut(s)	1012, 1190
FaeI	CATG	2 cut(s)	346, 538
FaqI	GGGAC	3 cut(s)	91, 111, 323
FatI	CATG	2 cut(s)	342, 534
FauI	CCCGC	4 cut(s)	68, 137, 200, 680
Fnu4HI	GCNGC	7 cut(s)	525, 528, 531, 587, 660, 807, 990
FokI	GGATG	1 cut(s)	532
FriOI	GRGCYC	2 cut(s)	1012, 1190
Fsp4HI	GCNGC	7 cut(s)	525, 528, 531, 587, 660, 807, 990
FspBI	CTAG	3 cut(s)	299, 674, 684
GlaI	GCGC	2 cut(s)	333, 672
GluI	GCNGC	7 cut(s)	525, 528, 531, 587, 660, 807, 990
GsaI	CCCAGC	1 cut(s)	593
GsuI	CTGGAG	1 cut(s)	735
HaeII	RGCGCY	1 cut(s)	674
HaeIII	GGCC	3 cut(s)	482, 551, 733
HapII	CCGG	2 cut(s)	543, 548
HhaI	GCGC	2 cut(s)	334, 673
Hin1II	CATG	2 cut(s)	346, 538
Hin6I	GCGC	2 cut(s)	332, 671
HinP1I	GCGC	2 cut(s)	332, 671
HincII	GTYRAC	1 cut(s)	850
HindII	GTYRAC	1 cut(s)	850
HinfI	GANTC	4 cut(s)	565, 717, 722, 1213
HpaII	CCGG	2 cut(s)	543, 548
HphI	GGTGA	6 cut(s)	166, 209, 268, 280, 406, 922
Hpy166II	GTNNAC	2 cut(s)	814, 850
Hpy188I	TCNGA	4 cut(s)	570, 636, 705, 1270
Hpy188III	TCNNGA	3 cut(s)	714, 864, 1132
Hpy8I	GTNNAC	2 cut(s)	814, 850
Hpy99I	CGWCG	3 cut(s)	272, 308, 659
HpyAV	CCTTC	5 cut(s)	94, 144, 246, 367, 1160
HpyCH4III	ACNGT	4 cut(s)	125, 165, 423, 428
HpyCH4IV	ACGT	2 cut(s)	17, 572
HpyCH4V	TGCA	6 cut(s)	530, 662, 773, 809, 992, 1178
HpyF10VI	GCNNNNNNNGC	9 cut(s)	192, 488, 497, 530, 668, 755, 764, 1024, 1097
HpyF3I	CTNAG	2 cut(s)	455, 1257
HpySE526I	ACGT	2 cut(s)	17, 572
Hsp92II	CATG	2 cut(s)	346, 538
HspAI	GCGC	2 cut(s)	332, 671
KpnI	GGTACC	1 cut(s)	427
Kzo9I	GATC	1 cut(s)	860
LmnI	GCTCC	2 cut(s)	959, 1015
Lsp1109I	GCAGC	7 cut(s)	511, 514, 542, 598, 646, 793, 976
LweI	GCATC	4 cut(s)	696, 782, 793, 1001
MaeI	CTAG	3 cut(s)	299, 674, 684
MaeII	ACGT	2 cut(s)	17, 572
MaeIII	GTNAC	2 cut(s)	111, 439
MalI	GATC	1 cut(s)	862
MboI	GATC	1 cut(s)	860
MboII	GAAGA	3 cut(s)	358, 591, 627
MflI	RGATCY	1 cut(s)	860
MhlI	GDGCHC	2 cut(s)	1012, 1190
MlsI	TGGCCA	2 cut(s)	482, 733
MluCI	AATT	2 cut(s)	371, 788
MluNI	TGGCCA	2 cut(s)	482, 733
MlyI	GAGTC	3 cut(s)	574, 726, 731
MmeI	TCCRAC	1 cut(s)	125
Mox20I	TGGCCA	2 cut(s)	482, 733
MscI	TGGCCA	2 cut(s)	482, 733
MseI	TTAA	2 cut(s)	630, 818
MslI	CAYNNNNRTG	1 cut(s)	1112
Msp20I	TGGCCA	2 cut(s)	482, 733
MspA1I	CMGCKG	1 cut(s)	589
MspI	CCGG	2 cut(s)	543, 548
MspR9I	CCNGG	1 cut(s)	543
MvnI	CGCG	3 cut(s)	315, 332, 472
MwoI	GCNNNNNNNGC	9 cut(s)	192, 488, 497, 530, 668, 755, 764, 1024, 1097
NciI	CCSGG	1 cut(s)	543
NdeII	GATC	1 cut(s)	860
NheI	GCTAGC	2 cut(s)	673, 683
NlaIII	CATG	2 cut(s)	346, 538
NlaIV	GGNNCC	3 cut(s)	10, 425, 1011
NmeAIII	GCCGAG	1 cut(s)	1067
NmuCI	GTSAC	2 cut(s)	111, 439
PaqCI	CACCTGC	1 cut(s)	653
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	1213
PfoI	TCCNGGA	1 cut(s)	541
PkrI	GCNGC	7 cut(s)	526, 529, 532, 588, 661, 808, 991
PleI	GAGTC	3 cut(s)	573, 725, 730
PpsI	GAGTC	3 cut(s)	573, 725, 730
PspFI	CCCAGC	1 cut(s)	589
PspN4I	GGNNCC	3 cut(s)	10, 425, 1011
PspPI	GGNCC	1 cut(s)	545
PstI	CTGCAG	3 cut(s)	532, 664, 811
PsuI	RGATCY	1 cut(s)	860
PvuII	CAGCTG	1 cut(s)	589
RsaI	GTAC	4 cut(s)	420, 425, 885, 1238
RsaNI	GTAC	4 cut(s)	419, 424, 884, 1237
RseI	CAYNNNNRTG	1 cut(s)	1112
Rsr2I	CGGWCCG	1 cut(s)	545
RsrII	CGGWCCG	1 cut(s)	545
SaqAI	TTAA	2 cut(s)	630, 818
SatI	GCNGC	7 cut(s)	525, 528, 531, 587, 660, 807, 990
Sau3AI	GATC	1 cut(s)	860
Sau96I	GGNCC	1 cut(s)	545
SchI	GAGTC	3 cut(s)	574, 726, 731
ScrFI	CCNGG	1 cut(s)	543
SduI	GDGCHC	2 cut(s)	1012, 1190
SfaNI	GCATC	4 cut(s)	696, 782, 793, 1001
SfcI	CTRYAG	3 cut(s)	528, 660, 807
SinI	GGWCC	1 cut(s)	545
SmiMI	CAYNNNNRTG	1 cut(s)	1112
Sse9I	AATT	2 cut(s)	371, 788
SsiI	CCGC	8 cut(s)	45, 75, 130, 145, 193, 313, 472, 687
SspMI	CTAG	3 cut(s)	299, 674, 684
StyD4I	CCNGG	1 cut(s)	541
TaaI	ACNGT	4 cut(s)	125, 165, 423, 428
TaiI	ACGT	2 cut(s)	20, 575
TaqI	TCGA	3 cut(s)	407, 720, 1133
TasI	AATT	2 cut(s)	371, 788
TatI	WGTACW	2 cut(s)	883, 1236
TfiI	GAWTC	1 cut(s)	1213
Tru1I	TTAA	2 cut(s)	630, 818
Tru9I	TTAA	2 cut(s)	630, 818
TscAI	CASTG	2 cut(s)	1029, 1128
TseFI	GTSAC	2 cut(s)	111, 439
TseI	GCWGC	7 cut(s)	524, 527, 530, 586, 659, 806, 989
Tsp45I	GTSAC	2 cut(s)	111, 439
TspDTI	ATGAA	2 cut(s)	359, 462
TspGWI	ACGGA	1 cut(s)	1143
TspRI	CASTG	2 cut(s)	1029, 1128
VpaK11BI	GGWCC	1 cut(s)	545
XapI	RAATTY	1 cut(s)	788
XcmI	CCANNNNNNNNNTGG	1 cut(s)	490
XspI	CTAG	3 cut(s)	299, 674, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.