Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000768.1

Orthogroup ID

OG0003123

Physical Location & Seq

Genomic Coordinates Reverse (-)

3308 .. 7295

Gene Structure 3988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000768.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atgggtgcttcctctacgttgtcgtttcacaagttcctctccgtccccccttctctctctcacctcaaaaatggcgggacttccttcccttcctcctctccgacctcaatgccactcctccataggcctcgcccttctctcctccgcctccacactcctaacgcaccgtttcgcctcccctccgatcgcaaacccgccgcccgcaatgtcaagctccacgcttcactcccaaaccctcccccctcctcctccgcgatctcaaacggcgtcgttttcagctccgtgttgaccatagccctggccgtcgccaaccgcgttctctacaagctcgcactcgtccccatgaagaaccaccccttctttctggcccaattcataacctttggttatgtggtgatatatttctcaatattgtacatacggtaccgttctgggattgtgactgacgaaatgctaaggcttccgaaatcgcggttcgtggctatcggagcattagaggcccttggagtcgcttctgggatggctgctgcagccatgcttcccggaccggccatacccatattgagtcaggaatttgtctttgttgatgctgcggcccacttaaagggaaaatcacttgacatatttgttgtcaactctttcggatctggatttcaggtgacacagttaataataggtcttctcattccaatacagattcactgtgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006857 GO:0006950 GO:0006952 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0010035 GO:0010038 GO:0015711 GO:0015833 GO:0034635 GO:0042221 GO:0042886 GO:0042939 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0051704 GO:0051707 GO:0071702 GO:0071705 GO:0072337 GO:0072348 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRT-like

Protein Analysis

236

Amino Acids

25.37

Weight (kDa)

10.37

Isoelectric Point (pI)

37.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24460 AT4G24460 AT4G24460 AT4G24460
fragaria_vesca	FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370
malus_domestica	MD02G1042100.v1.1 MD08G1202100.v1.1 MD08G1202700.v1.1 MD08G1202800.v1.1
prunus_persica	Prupe.1G535300_v2.0.a1 Prupe.1G535300_v2.0.a1
pyrus_communis	pycom08g17510
rosa_chinensis	RchiOBHm_Chr7g0234941 RchiOBHm_Chr7g0234951 RchiOBHm_Chr7g0234961
rosa_laevigata	RLG00000001190 RLG00000001191
rosa_multiflora	Rmu_sc0000039.1_g000013 Rmu_sc0000039.1_g000014 Rmu_sc0000768.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226420 Rroxscaffold_3G00226430
rosa_rugosa	Rorug07G0286700
rosa_samantha	Rh7AG441400 Rh7AG441500 Rh7BG414300 Rh7CG462800 Rh7DG431000
rosa_wichuraiana	Rw7G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	423
AccB1I	GGYRCC	1 cut(s)	423
AccII	CGCG	3 cut(s)	254, 315, 472
AciI	CCGC	9 cut(s)	75, 145, 195, 198, 202, 252, 313, 472, 593
AclWI	GGATC	1 cut(s)	652
AcoI	YGGCCR	2 cut(s)	300, 549
AcsI	RAATTY	1 cut(s)	572
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	2 cut(s)	416, 425
AfiI	CCNNNNNNNGG	1 cut(s)	604
AjnI	CCWGG	1 cut(s)	297
AluBI	AGCT	3 cut(s)	214, 279, 328
AluI	AGCT	3 cut(s)	214, 279, 328
AlwI	GGATC	1 cut(s)	652
AoxI	GGCC	6 cut(s)	125, 300, 366, 498, 549, 594
ApeKI	GCWGC	4 cut(s)	524, 527, 530, 590
ApoI	RAATTY	1 cut(s)	572
Asp718I	GGTACC	1 cut(s)	423
AspS9I	GGNCC	4 cut(s)	367, 499, 545, 595
AsuC2I	CCSGG	1 cut(s)	543
AsuHPI	GGTGA	3 cut(s)	53, 406, 670
AvaII	GGWCC	1 cut(s)	545
BanI	GGYRCC	1 cut(s)	423
BbsI	GAAGAC	1 cut(s)	671
BbvI	GCAGC	4 cut(s)	511, 514, 542, 577
BccI	CCATC	1 cut(s)	514
BceAI	ACGGC	2 cut(s)	280, 287
BcgI	CGANNNNNNTGC	2 cut(s)	91, 125
BciT130I	CCWGG	1 cut(s)	299
BcnI	CCSGG	1 cut(s)	543
BfmI	CTRYAG	1 cut(s)	528
BisI	GCNGC	6 cut(s)	198, 525, 528, 531, 591, 594
BlsI	GCNGC	6 cut(s)	199, 526, 529, 532, 592, 595
Bme1390I	CCNGG	2 cut(s)	299, 543
Bme18I	GGWCC	1 cut(s)	545
BmgT120I	GGNCC	4 cut(s)	367, 499, 545, 595
BmiI	GGNNCC	1 cut(s)	425
BmrFI	CCNGG	2 cut(s)	299, 543
BmsI	GCATC	1 cut(s)	577
BpiI	GAAGAC	1 cut(s)	671
Bpu10I	CCTNAGC	1 cut(s)	455
BpuMI	CCSGG	1 cut(s)	543
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	2 cut(s)	297, 502
Bsc4I	CCNNNNNNNGG	1 cut(s)	604
Bse118I	RCCGGY	1 cut(s)	547
Bse3DI	GCAATG	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	299
BseDI	CCNNGG	2 cut(s)	297, 502
BseGI	GGATG	1 cut(s)	525
BseLI	CCNNNNNNNGG	1 cut(s)	604
BseMI	GCAATG	1 cut(s)	211
BseRI	GAGGAG	5 cut(s)	85, 107, 131, 235, 238
BseXI	GCAGC	4 cut(s)	511, 514, 542, 577
Bsh1236I	CGCG	3 cut(s)	254, 315, 472
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	6 cut(s)	127, 302, 368, 500, 551, 596
BshNI	GGYRCC	1 cut(s)	423
BsiEI	CGRYCG	1 cut(s)	187
BsiSI	CCGG	2 cut(s)	543, 548
BslFI	GGGAC	3 cut(s)	29, 91, 323
BslI	CCNNNNNNNGG	1 cut(s)	604
BsmFI	GGGAC	3 cut(s)	29, 91, 323
BsnI	GGCC	6 cut(s)	127, 302, 368, 500, 551, 596
Bsp1407I	TGTACA	1 cut(s)	414
Bsp143I	GATC	3 cut(s)	184, 255, 644
BspACI	CCGC	9 cut(s)	75, 145, 195, 198, 202, 252, 313, 472, 593
BspANI	GGCC	6 cut(s)	127, 302, 368, 500, 551, 596
BspFNI	CGCG	3 cut(s)	254, 315, 472
BspLI	GGNNCC	1 cut(s)	425
BspMAI	CTGCAG	1 cut(s)	532
BspPI	GGATC	1 cut(s)	652
BspT107I	GGYRCC	1 cut(s)	423
BsrDI	GCAATG	1 cut(s)	211
BsrFI	RCCGGY	1 cut(s)	547
BsrGI	TGTACA	1 cut(s)	414
BssAI	RCCGGY	1 cut(s)	547
BssECI	CCNNGG	2 cut(s)	297, 502
BssMI	GATC	3 cut(s)	184, 255, 644
BssNI	GRCGYC	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	502
Bst2UI	CCWGG	1 cut(s)	299
Bst4CI	ACNGT	5 cut(s)	168, 423, 428, 666, 704
BstACI	GRCGYC	1 cut(s)	267
BstAUI	TGTACA	1 cut(s)	414
BstC8I	GCNNGC	2 cut(s)	202, 330
BstDEI	CTNAG	1 cut(s)	455
BstF5I	GGATG	1 cut(s)	525
BstFNI	CGCG	3 cut(s)	254, 315, 472
BstKTI	GATC	3 cut(s)	187, 258, 647
BstMBI	GATC	3 cut(s)	184, 255, 644
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	3 cut(s)	488, 497, 530
BstNI	CCWGG	1 cut(s)	299
BstSCI	CCNGG	2 cut(s)	297, 541
BstSFI	CTRYAG	1 cut(s)	528
BstUI	CGCG	3 cut(s)	254, 315, 472
BstV1I	GCAGC	4 cut(s)	511, 514, 542, 577
BstV2I	GAAGAC	1 cut(s)	671
BstX2I	RGATCY	1 cut(s)	644
BstXI	CCANNNNNNTGG	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	644
BsuRI	GGCC	6 cut(s)	127, 302, 368, 500, 551, 596
BtsCI	GGATG	1 cut(s)	525
BtsIMutI	CAGTG	1 cut(s)	700
Cac8I	GCNNGC	2 cut(s)	202, 330
Cfr10I	RCCGGY	1 cut(s)	547
Cfr13I	GGNCC	4 cut(s)	367, 499, 545, 595
CpoI	CGGWCCG	1 cut(s)	545
CseI	GACGC	1 cut(s)	256
Csp6I	GTAC	2 cut(s)	415, 424
CspI	CGGWCCG	1 cut(s)	545
CviAII	CATG	2 cut(s)	343, 535
CviQI	GTAC	2 cut(s)	415, 424
DdeI	CTNAG	1 cut(s)	455
DpnI	GATC	3 cut(s)	186, 257, 646
DpnII	GATC	3 cut(s)	184, 255, 644
EaeI	YGGCCR	2 cut(s)	300, 549
EciI	GGCGGA	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	502
Eco147I	AGGCCT	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	545
EcoO109I	RGGNCCY	1 cut(s)	499
EcoRII	CCWGG	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	502
ErhI	CCWWGG	1 cut(s)	502
FaeI	CATG	2 cut(s)	346, 538
FaqI	GGGAC	3 cut(s)	29, 91, 323
FatI	CATG	2 cut(s)	342, 534
FauI	CCCGC	3 cut(s)	68, 202, 209
Fnu4HI	GCNGC	6 cut(s)	198, 525, 528, 531, 591, 594
FokI	GGATG	1 cut(s)	532
Fsp4HI	GCNGC	6 cut(s)	198, 525, 528, 531, 591, 594
GluI	GCNGC	6 cut(s)	198, 525, 528, 531, 591, 594
HaeIII	GGCC	6 cut(s)	127, 302, 368, 500, 551, 596
HapII	CCGG	2 cut(s)	543, 548
HgaI	GACGC	1 cut(s)	256
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	2 cut(s)	346, 538
HincII	GTYRAC	2 cut(s)	288, 634
HindII	GTYRAC	2 cut(s)	288, 634
HinfI	GANTC	3 cut(s)	507, 565, 697
HpaII	CCGG	2 cut(s)	543, 548
HphI	GGTGA	3 cut(s)	53, 406, 670
Hpy166II	GTNNAC	2 cut(s)	288, 634
Hpy188I	TCNGA	5 cut(s)	102, 184, 465, 488, 644
Hpy188III	TCNNGA	2 cut(s)	569, 648
Hpy8I	GTNNAC	2 cut(s)	288, 634
Hpy99I	CGWCG	2 cut(s)	272, 308
HpyAV	CCTTC	5 cut(s)	60, 94, 99, 144, 367
HpyCH4III	ACNGT	5 cut(s)	168, 423, 428, 666, 704
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	1 cut(s)	530
HpyF10VI	GCNNNNNNNGC	3 cut(s)	488, 497, 530
HpyF3I	CTNAG	1 cut(s)	455
HpySE526I	ACGT	1 cut(s)	17
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	2 cut(s)	346, 538
KpnI	GGTACC	1 cut(s)	427
Kzo9I	GATC	3 cut(s)	184, 255, 644
LmnI	GCTCC	3 cut(s)	219, 284, 488
Lsp1109I	GCAGC	4 cut(s)	511, 514, 542, 577
LweI	GCATC	1 cut(s)	577
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	2 cut(s)	439, 658
MalI	GATC	3 cut(s)	186, 257, 646
MboI	GATC	3 cut(s)	184, 255, 644
MboII	GAAGA	2 cut(s)	358, 671
MflI	RGATCY	1 cut(s)	644
MluCI	AATT	2 cut(s)	371, 572
MlyI	GAGTC	2 cut(s)	516, 574
MmeI	TCCRAC	1 cut(s)	125
MseI	TTAA	2 cut(s)	602, 668
MspI	CCGG	2 cut(s)	543, 548
MspR9I	CCNGG	2 cut(s)	299, 543
MvaI	CCWGG	1 cut(s)	299
MvnI	CGCG	3 cut(s)	254, 315, 472
MwoI	GCNNNNNNNGC	3 cut(s)	488, 497, 530
NciI	CCSGG	1 cut(s)	543
NdeII	GATC	3 cut(s)	184, 255, 644
NlaIII	CATG	2 cut(s)	346, 538
NlaIV	GGNNCC	1 cut(s)	425
NmuCI	GTSAC	2 cut(s)	439, 658
PceI	AGGCCT	1 cut(s)	127
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	697
PfoI	TCCNGGA	1 cut(s)	541
PkrI	GCNGC	6 cut(s)	199, 526, 529, 532, 592, 595
Ple19I	CGATCG	1 cut(s)	187
PleI	GAGTC	2 cut(s)	515, 573
PpsI	GAGTC	2 cut(s)	515, 573
Psp6I	CCWGG	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	297
PspN4I	GGNNCC	1 cut(s)	425
PspPI	GGNCC	4 cut(s)	367, 499, 545, 595
PstI	CTGCAG	1 cut(s)	532
PsuI	RGATCY	1 cut(s)	644
PvuI	CGATCG	1 cut(s)	187
RsaI	GTAC	2 cut(s)	416, 425
RsaNI	GTAC	2 cut(s)	415, 424
Rsr2I	CGGWCCG	1 cut(s)	545
RsrII	CGGWCCG	1 cut(s)	545
SaqAI	TTAA	2 cut(s)	602, 668
SatI	GCNGC	6 cut(s)	198, 525, 528, 531, 591, 594
Sau3AI	GATC	3 cut(s)	184, 255, 644
Sau96I	GGNCC	4 cut(s)	367, 499, 545, 595
SchI	GAGTC	2 cut(s)	516, 574
ScrFI	CCNGG	2 cut(s)	299, 543
SetI	ASST	9 cut(s)	20, 66, 107, 216, 281, 330, 383, 660, 679
SfaNI	GCATC	1 cut(s)	577
SfcI	CTRYAG	1 cut(s)	528
SinI	GGWCC	1 cut(s)	545
Sse9I	AATT	2 cut(s)	371, 572
SseBI	AGGCCT	1 cut(s)	127
SsiI	CCGC	9 cut(s)	75, 145, 195, 198, 202, 252, 313, 472, 593
SspI	AATATT	1 cut(s)	411
StuI	AGGCCT	1 cut(s)	127
StyD4I	CCNGG	2 cut(s)	297, 541
StyI	CCWWGG	1 cut(s)	502
TaaI	ACNGT	5 cut(s)	168, 423, 428, 666, 704
TaiI	ACGT	1 cut(s)	20
TasI	AATT	2 cut(s)	371, 572
TatI	WGTACW	1 cut(s)	414
TauI	GCSGC	2 cut(s)	200, 596
TfiI	GAWTC	1 cut(s)	697
Tru1I	TTAA	2 cut(s)	602, 668
Tru9I	TTAA	2 cut(s)	602, 668
TscAI	CASTG	1 cut(s)	707
TseFI	GTSAC	2 cut(s)	439, 658
TseI	GCWGC	4 cut(s)	524, 527, 530, 590
Tsp45I	GTSAC	2 cut(s)	439, 658
TspDTI	ATGAA	2 cut(s)	359, 364
TspGWI	ACGGA	2 cut(s)	31, 271
TspRI	CASTG	1 cut(s)	707
VpaK11BI	GGWCC	1 cut(s)	545
XapI	RAATTY	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.