Prupe.1G535300_v2.0.a1

CRT-like, chloroquine-resistance transporter-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
43749777 .. 43756216
6440 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G535300.1

Sequence Viewer

Length: 1290 bp
ATGGGATATTCAGTATCCACTACGTCGTCGTTTTCCCACTTCTTCTCCGTCCCACCTCCTCCTCGCACCTACACGATCAAAAATGACGCGACGATCCCCTTCCTTTCTCTCTCCTCAATGCCGCTCCCTCGACTCTCTCTCCGCCGCCGCGTCCCCCAGGACGCACCGTTTCACCTCGCGTCCGAAACCACCCGCAGAGCTTCATCAACAACTCGCAATGTCAAAGCCGAAGCTTCACTCCCAGACCCACCCTCCTCTTCCTCCAATACAAAACGCGTCGTTTTGGTCTCCGCTTTGACCATTGCTCTGGCTGTCGCCAACCGCGTGCTCTACAAGCTCGCCCTTGTCCCCATGAAAAACCACCCTTTCTTCTTGGCCCAATTCACAACCTTCGGCTACGTGATTATATATTTTTCGATATTGTTCGCACGATACCGTTCTGGGATTGTGACTGATGAAATGATAAGCCTTCCCAAATCACGGTTTGTGGCCATTGGTGCCTTGGAAGCCCTTGGAGTTGCTTCTGGGATGGCTGCTGCAGCCATGCTTCCCGGACCGGCAATACCCATATTGAGTCAGACGTTTTTGGTGTGGCAGCTGAGTTTTTCTGTCCTCCTTTTGGGGAGAACATACACATTCAATCAGATCTCCGGCTGCATACTCGTAGCTATAGGTGTAGCAGCGGCTGTTACAAGTGGGTCTGATTCGGGTCAGATGCTATCTGGAGTTGAGTCTATGTGGCCAGTACTAATGATTGCTTCAAGTGCTTTTCAAGCTGGTGCATCTATAATCAAGGAGTTCGTCTTCGTTGATGCTGAGGCCCGCCTTAAGGAAAAATCACTTGACATATTTGTTGTCAATTCTTTTGGATCTGGATTTCAGGCTCTTTTTATACTTCTCTTTCTACCATTCTTGTCAAACCTGAGAGGCATACCATTTGCGCAACTTCCTTCATATCTTAAAGATGGCGCTGGTTGCTTTCTGAATATTGGAGCCGATACATCAGGTTGTAATGGGGCTCCATTGCTTCCGTTGCTTTACATAGGTACCAATCTGTTTTTCAACATATCATTGCTGAGTGTAGTAAAGATTTCCTCTGCGGTTGTTGCTTCTCTCATTGTGATGTTGTCAGTGCCGATATCGATTTATATTCTTTCCCTTCCATTGCCATATCTGGAAGCGGGTGCAACTTTGAGCCCCTTTTTCCTCTTTGGTAGCACAGTTCTTTTGTTGGGTCTTATTCTGTACAGCATGCCTCAGCCTGCCAAGGATGGCTCTGAAATTAGTTGA

Protein Analysis

430

Amino Acids

45.9

Weight (kDa)

9.4

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 942
Acc65I GGTACC 1 cut(s) 1046
AccB1I GGYRCC 2 cut(s) 497, 1046
AccBSI CCGCTC 1 cut(s) 124
AccII CGCG 5 cut(s) 89, 150, 179, 276, 324
AclWI GGATC 2 cut(s) 88, 877
AcoI YGGCCR 2 cut(s) 489, 740
AfaI GTAC 3 cut(s) 747, 1048, 1247
AfiI CCNNNNNNNGG 3 cut(s) 480, 619, 829
AflII CTTAAG 1 cut(s) 827
AflIII ACRYGT 1 cut(s) 274
AgsI TTSAA 4 cut(s) 640, 762, 773, 1063
AjnI CCWGG 1 cut(s) 156
AjuI GAANNNNNNNTTGG 2 cut(s) 1043, 1075
AluBI AGCT 6 cut(s) 200, 233, 337, 598, 668, 776
AluI AGCT 6 cut(s) 200, 233, 337, 598, 668, 776
Alw21I GWGCWC 1 cut(s) 330
Alw26I GTCTC 1 cut(s) 292
AlwI GGATC 2 cut(s) 88, 877
AlwNI CAGNNNCTG 1 cut(s) 686
AoxI GGCC 4 cut(s) 375, 489, 740, 819
ApeKI GCWGC 6 cut(s) 533, 536, 539, 595, 654, 680
Asp718I GGTACC 1 cut(s) 1046
AspLEI GCGC 2 cut(s) 943, 971
AspS9I GGNCC 3 cut(s) 376, 554, 820
AsuC2I CCSGG 1 cut(s) 552
AsuHPI GGTGA 1 cut(s) 164
AvaII GGWCC 1 cut(s) 554
BaeI ACNNNNGTAYC 2 cut(s) 1030, 1063
BalI TGGCCA 2 cut(s) 491, 742
BanI GGYRCC 2 cut(s) 497, 1046
BanII GRGCYC 2 cut(s) 1021, 1199
BbsI GAAGAC 1 cut(s) 796
Bbv12I GWGCWC 1 cut(s) 330
BbvCI CCTCAGC 2 cut(s) 816, 1257
BbvI GCAGC 6 cut(s) 520, 523, 551, 607, 641, 692
BccI CCATC 3 cut(s) 523, 959, 1265
BciT130I CCWGG 1 cut(s) 158
BciVI GTATCC 1 cut(s) 25
BcnI CCSGG 1 cut(s) 552
BcoDI GTCTC 1 cut(s) 292
BfmI CTRYAG 2 cut(s) 537, 669
BfoI RGCGCY 1 cut(s) 972
BfrI CTTAAG 1 cut(s) 827
BfuI GTATCC 1 cut(s) 25
BglII AGATCT 1 cut(s) 645
BmcAI AGTACT 1 cut(s) 747
Bme1390I CCNGG 2 cut(s) 158, 552
Bme18I GGWCC 1 cut(s) 554
BmgT120I GGNCC 3 cut(s) 376, 554, 820
BmiI GGNNCC 4 cut(s) 499, 994, 1020, 1048
BmrFI CCNGG 2 cut(s) 158, 552
BmsI GCATC 3 cut(s) 705, 791, 802
BpiI GAAGAC 1 cut(s) 796
BpmI CTGGAG 1 cut(s) 744
Bpu10I CCTNAGC 2 cut(s) 816, 1257
BpuMI CCSGG 1 cut(s) 552
Bsa29I ATCGAT 1 cut(s) 1142
BsaAI YACGTR 1 cut(s) 400
BsaI GGTCTC 1 cut(s) 292
BsaJI CCNNGG 4 cut(s) 156, 501, 511, 1266
BsaXI ACNNNNNCTCC 6 cut(s) 29, 59, 123, 153, 236, 266
Bsc4I CCNNNNNNNGG 3 cut(s) 480, 619, 829
Bse118I RCCGGY 1 cut(s) 556
Bse1I ACTGG 1 cut(s) 743
Bse3DI GCAATG 5 cut(s) 223, 300, 1022, 1070, 1163
BseBI CCWGG 1 cut(s) 158
BseCI ATCGAT 1 cut(s) 1142
BseDI CCNNGG 4 cut(s) 156, 501, 511, 1266
BseGI GGATG 2 cut(s) 534, 1276
BseLI CCNNNNNNNGG 3 cut(s) 480, 619, 829
BseMI GCAATG 5 cut(s) 223, 300, 1022, 1070, 1163
BseMII CTCAG 5 cut(s) 590, 807, 914, 1067, 1271
BseNI ACTGG 1 cut(s) 743
BseRI GAGGAG 4 cut(s) 48, 51, 103, 244
BseXI GCAGC 6 cut(s) 520, 523, 551, 607, 641, 692
Bsh1236I CGCG 5 cut(s) 89, 150, 179, 276, 324
BshFI GGCC 4 cut(s) 377, 491, 742, 821
BshNI GGYRCC 2 cut(s) 497, 1046
BshVI ATCGAT 1 cut(s) 1142
BsiHKAI GWGCWC 1 cut(s) 330
BsiSI CCGG 3 cut(s) 552, 557, 651
BslFI GGGAC 3 cut(s) 35, 137, 332
BslI CCNNNNNNNGG 3 cut(s) 480, 619, 829
BsmAI GTCTC 1 cut(s) 292
BsmFI GGGAC 3 cut(s) 35, 137, 332
BsnI GGCC 4 cut(s) 377, 491, 742, 821
Bso31I GGTCTC 1 cut(s) 292
Bsp1286I GDGCHC 3 cut(s) 330, 1021, 1199
Bsp1407I TGTACA 1 cut(s) 1245
Bsp143I GATC 4 cut(s) 75, 93, 645, 869
BspANI GGCC 4 cut(s) 377, 491, 742, 821
BspCNI CTCAG 5 cut(s) 591, 808, 915, 1068, 1270
BspDI ATCGAT 1 cut(s) 1142
BspFNI CGCG 5 cut(s) 89, 150, 179, 276, 324
BspLI GGNNCC 4 cut(s) 499, 994, 1020, 1048
BspMAI CTGCAG 1 cut(s) 541
BspPI GGATC 2 cut(s) 88, 877
BspT107I GGYRCC 2 cut(s) 497, 1046
BspTI CTTAAG 1 cut(s) 827
BspTNI GGTCTC 1 cut(s) 292
BsrBI CCGCTC 1 cut(s) 124
BsrDI GCAATG 5 cut(s) 223, 300, 1022, 1070, 1163
BsrFI RCCGGY 1 cut(s) 556
BsrGI TGTACA 1 cut(s) 1245
BsrI ACTGG 1 cut(s) 743
BssAI RCCGGY 1 cut(s) 556
BssECI CCNNGG 4 cut(s) 156, 501, 511, 1266
BssMI GATC 4 cut(s) 75, 93, 645, 869
BssT1I CCWWGG 3 cut(s) 501, 511, 1266
Bst2UI CCWGG 1 cut(s) 158
Bst4CI ACNGT 4 cut(s) 168, 437, 483, 1222
Bst6I CTCTTC 1 cut(s) 262
BstAFI CTTAAG 1 cut(s) 827
BstAUI TGTACA 1 cut(s) 1245
BstBAI YACGTR 1 cut(s) 400
BstC8I GCNNGC 5 cut(s) 326, 339, 823, 1253, 1263
BstDEI CTNAG 5 cut(s) 599, 816, 923, 1076, 1257
BstF5I GGATG 2 cut(s) 534, 1276
BstFNI CGCG 5 cut(s) 89, 150, 179, 276, 324
BstH2I RGCGCY 1 cut(s) 972
BstHHI GCGC 2 cut(s) 943, 971
BstKTI GATC 4 cut(s) 78, 96, 648, 872
BstMAI GTCTC 1 cut(s) 292
BstMBI GATC 4 cut(s) 75, 93, 645, 869
BstMWI GCNNNNNNNGC 9 cut(s) 334, 497, 506, 539, 764, 773, 975, 1033, 1106
BstNI CCWGG 1 cut(s) 158
BstNSI RCATGY 1 cut(s) 1255
BstSCI CCNGG 2 cut(s) 156, 550
BstSFI CTRYAG 2 cut(s) 537, 669
BstUI CGCG 5 cut(s) 89, 150, 179, 276, 324
BstV1I GCAGC 6 cut(s) 520, 523, 551, 607, 641, 692
BstV2I GAAGAC 1 cut(s) 796
BstX2I RGATCY 2 cut(s) 645, 869
BstXI CCANNNNNNTGG 1 cut(s) 307
BstYI RGATCY 2 cut(s) 645, 869
Bsu15I ATCGAT 1 cut(s) 1142
BsuI GTATCC 1 cut(s) 25
BsuRI GGCC 4 cut(s) 377, 491, 742, 821
BsuTUI ATCGAT 1 cut(s) 1142
BtsCI GGATG 2 cut(s) 534, 1276
BtsIMutI CAGTG 1 cut(s) 1137
Cac8I GCNNGC 5 cut(s) 326, 339, 823, 1253, 1263
CaiI CAGNNNCTG 1 cut(s) 686
CfoI GCGC 2 cut(s) 943, 971
Cfr10I RCCGGY 1 cut(s) 556
Cfr13I GGNCC 3 cut(s) 376, 554, 820
ClaI ATCGAT 1 cut(s) 1142
CpoI CGGWCCG 1 cut(s) 554
CseI GACGC 5 cut(s) 95, 139, 168, 170, 265
Csp6I GTAC 3 cut(s) 746, 1047, 1246
CspI CGGWCCG 1 cut(s) 554
CviAII CATG 3 cut(s) 352, 544, 1252
CviQI GTAC 3 cut(s) 746, 1047, 1246
DdeI CTNAG 5 cut(s) 599, 816, 923, 1076, 1257
DpnI GATC 4 cut(s) 77, 95, 647, 871
DpnII GATC 4 cut(s) 75, 93, 645, 869
EaeI YGGCCR 2 cut(s) 489, 740
Eam1104I CTCTTC 1 cut(s) 262
EarI CTCTTC 1 cut(s) 262
EciI GGCGGA 1 cut(s) 131
Eco130I CCWWGG 3 cut(s) 501, 511, 1266
Eco24I GRGCYC 2 cut(s) 1021, 1199
Eco31I GGTCTC 1 cut(s) 292
Eco32I GATATC 1 cut(s) 1140
Eco47I GGWCC 1 cut(s) 554
EcoRII CCWGG 1 cut(s) 156
EcoRV GATATC 1 cut(s) 1140
EcoT14I CCWWGG 3 cut(s) 501, 511, 1266
EcoT38I GRGCYC 2 cut(s) 1021, 1199
ErhI CCWWGG 3 cut(s) 501, 511, 1266
FaeI CATG 3 cut(s) 355, 547, 1255
FaqI GGGAC 3 cut(s) 35, 137, 332
FatI CATG 3 cut(s) 351, 543, 1251
FauI CCCGC 3 cut(s) 200, 830, 1174
FokI GGATG 2 cut(s) 541, 1283
FriOI GRGCYC 2 cut(s) 1021, 1199
FspI TGCGCA 1 cut(s) 942
GlaI GCGC 2 cut(s) 942, 970
GsuI CTGGAG 1 cut(s) 744
HaeII RGCGCY 1 cut(s) 972
HaeIII GGCC 4 cut(s) 377, 491, 742, 821
HapII CCGG 3 cut(s) 552, 557, 651
HgaI GACGC 5 cut(s) 95, 139, 168, 170, 265
HhaI GCGC 2 cut(s) 943, 971
Hin1II CATG 3 cut(s) 355, 547, 1255
Hin6I GCGC 2 cut(s) 941, 969
HinP1I GCGC 2 cut(s) 941, 969
HindIII AAGCTT 1 cut(s) 231
HinfI GANTC 4 cut(s) 132, 574, 704, 731
HpaII CCGG 3 cut(s) 552, 557, 651
HphI GGTGA 1 cut(s) 164
Hpy188I TCNGA 7 cut(s) 184, 579, 645, 703, 714, 984, 1279
Hpy188III TCNNGA 3 cut(s) 723, 873, 1175
Hpy99I CGWCG 4 cut(s) 28, 31, 94, 281
HpyAV CCTTC 5 cut(s) 109, 400, 479, 960, 1169
HpyCH4III ACNGT 4 cut(s) 168, 437, 483, 1222
HpyCH4IV ACGT 3 cut(s) 23, 399, 581
HpyCH4V TGCA 4 cut(s) 539, 657, 782, 1187
HpyF10VI GCNNNNNNNGC 9 cut(s) 334, 497, 506, 539, 764, 773, 975, 1033, 1106
HpyF3I CTNAG 5 cut(s) 599, 816, 923, 1076, 1257
HpySE526I ACGT 3 cut(s) 23, 399, 581
Hsp92II CATG 3 cut(s) 355, 547, 1255
HspAI GCGC 2 cut(s) 941, 969
KpnI GGTACC 1 cut(s) 1050
Kzo9I GATC 4 cut(s) 75, 93, 645, 869
LmnI GCTCC 3 cut(s) 129, 992, 1024
Lsp1109I GCAGC 6 cut(s) 520, 523, 551, 607, 641, 692
LweI GCATC 3 cut(s) 705, 791, 802
MaeII ACGT 3 cut(s) 23, 399, 581
MaeIII GTNAC 2 cut(s) 448, 688
MalI GATC 4 cut(s) 77, 95, 647, 871
MbiI CCGCTC 1 cut(s) 124
MboI GATC 4 cut(s) 75, 93, 645, 869
MboII GAAGA 4 cut(s) 34, 249, 361, 796
MflI RGATCY 2 cut(s) 645, 869
MhlI GDGCHC 3 cut(s) 330, 1021, 1199
MlsI TGGCCA 2 cut(s) 491, 742
MluCI AATT 3 cut(s) 380, 859, 1281
MluI ACGCGT 1 cut(s) 274
MluNI TGGCCA 2 cut(s) 491, 742
MlyI GAGTC 3 cut(s) 126, 583, 740
Mox20I TGGCCA 2 cut(s) 491, 742
MscI TGGCCA 2 cut(s) 491, 742
MseI TTAA 2 cut(s) 828, 960
MslI CAYNNNNRTG 1 cut(s) 1121
Msp20I TGGCCA 2 cut(s) 491, 742
MspA1I CMGCKG 2 cut(s) 598, 683
MspCI CTTAAG 1 cut(s) 827
MspI CCGG 3 cut(s) 552, 557, 651
MspR9I CCNGG 2 cut(s) 158, 552
MvaI CCWGG 1 cut(s) 158
MvnI CGCG 5 cut(s) 89, 150, 179, 276, 324
MwoI GCNNNNNNNGC 9 cut(s) 334, 497, 506, 539, 764, 773, 975, 1033, 1106
NciI CCSGG 1 cut(s) 552
NdeII GATC 4 cut(s) 75, 93, 645, 869
NlaIII CATG 3 cut(s) 355, 547, 1255
NlaIV GGNNCC 4 cut(s) 499, 994, 1020, 1048
NmuCI GTSAC 1 cut(s) 448
NsbI TGCGCA 1 cut(s) 942
NspI RCATGY 1 cut(s) 1255
PaeI GCATGC 1 cut(s) 1255
PcsI WCGNNNNNNNCGW 1 cut(s) 321
PfeI GAWTC 1 cut(s) 704
PfoI TCCNGGA 1 cut(s) 550
PleI GAGTC 3 cut(s) 126, 582, 739
PpsI GAGTC 3 cut(s) 126, 582, 739
Ppu21I YACGTR 1 cut(s) 400
Psp6I CCWGG 1 cut(s) 156
PspGI CCWGG 1 cut(s) 156
PspN4I GGNNCC 4 cut(s) 499, 994, 1020, 1048
PspPI GGNCC 3 cut(s) 376, 554, 820
PstI CTGCAG 1 cut(s) 541
PstNI CAGNNNCTG 1 cut(s) 686
PsuI RGATCY 2 cut(s) 645, 869
PvuII CAGCTG 1 cut(s) 598
RsaI GTAC 3 cut(s) 747, 1048, 1247
RsaNI GTAC 3 cut(s) 746, 1047, 1246
RseI CAYNNNNRTG 1 cut(s) 1121
Rsr2I CGGWCCG 1 cut(s) 554
RsrII CGGWCCG 1 cut(s) 554
SaqAI TTAA 2 cut(s) 828, 960
Sau3AI GATC 4 cut(s) 75, 93, 645, 869
Sau96I GGNCC 3 cut(s) 376, 554, 820
ScaI AGTACT 1 cut(s) 747
SchI GAGTC 3 cut(s) 126, 583, 740
ScrFI CCNGG 2 cut(s) 158, 552
SduI GDGCHC 3 cut(s) 330, 1021, 1199
SfaNI GCATC 3 cut(s) 705, 791, 802
SfcI CTRYAG 2 cut(s) 537, 669
SinI GGWCC 1 cut(s) 554
SmiMI CAYNNNNRTG 1 cut(s) 1121
SmlI CTYRAG 1 cut(s) 827
SmoI CTYRAG 1 cut(s) 827
SphI GCATGC 1 cut(s) 1255
Sse9I AATT 3 cut(s) 380, 859, 1281
SspI AATATT 1 cut(s) 988
StyD4I CCNGG 2 cut(s) 156, 550
StyI CCWWGG 3 cut(s) 501, 511, 1266
TaaI ACNGT 4 cut(s) 168, 437, 483, 1222
TaiI ACGT 3 cut(s) 26, 402, 584
TaqI TCGA 3 cut(s) 130, 416, 1142
TasI AATT 3 cut(s) 380, 859, 1281
TatI WGTACW 2 cut(s) 745, 1245
TauI GCSGC 4 cut(s) 124, 147, 150, 686
TfiI GAWTC 1 cut(s) 704
Tru1I TTAA 2 cut(s) 828, 960
Tru9I TTAA 2 cut(s) 828, 960
TscAI CASTG 1 cut(s) 1137
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 6 cut(s) 533, 536, 539, 595, 654, 680
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 4 cut(s) 192, 368, 471, 942
TspGWI ACGGA 2 cut(s) 37, 1020
TspRI CASTG 1 cut(s) 1137
Vha464I CTTAAG 1 cut(s) 827
VpaK11BI GGWCC 1 cut(s) 554
XceI RCATGY 1 cut(s) 1255
XcmI CCANNNNNNNNNTGG 1 cut(s) 499
ZrmI AGTACT 1 cut(s) 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.