Rh7AG441500

CRT-like, chloroquine-resistance transporter-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0003123
Physical Location & Seq
Forward (+)
59846698 .. 59852511
5814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG441500.1

Sequence Viewer

Length: 1290 bp
ATGGGTTCCTCAACGGCGTCGTTTCACAAGCTCCTCTCCCTCCCTTCCCACACCAAAAATGGCGCAACTCGCAACCCTTTATTCTCACACTCAAGGCCGCTTCTTCTGCTTCATCCGAGGTGGCGTCATCACCATCGTCGTCATCGGCTCTCTCTCGCTACTCTAAACGCACCGTTTTGCCTCACTTCGGATCGCGGACCCGCCAGGCGCAATGTCAGGCTGCACGCTTCGGTCGCCAACCCAGCTTCCTCCTCTAATCCGTCGACTTCAAAACGCGTCGTTTTGAGCTCCCTGTTGACCATTGCTCTCGCCGTCGGCAACAAGGTCTTCTACAAGCTCGCACTCGTTCCCATGAAGAACCACCCTTTCTTTTTCGCCCAATTCACCACCTTCGGTTATGTGATTATATACTTTTCAATACTGTACCTACGGTACCGTTCTGGGAGGGTGACCGATGAAATGATAGCCCTTCCCAAAGCTCCATTTGTGGCCATTGGTGCCTTGGATGCTCTCGGAGTCGCTGCTGGGATGGCTGCCGTAGCCATGCTTCCCGGACCGGCCATACCCTTATTGAGTCAGACAATGTTGGTGTGGCAGCTGGGTTTTTCTTCTCTTATATTGGGAAAAAGATACAGATGCAATCAGATTGTTGGCTGCATCCTTGTAGCTGTAGGTGTAGCGCTAGCTGTGGCAAGCGGGTCTGATTCTGGCCAGATGCTATCTGGAGTTGAGCCTGTGTGGCCTCTACTAATGATTGCTTCAAGTGCTTTTCAAGCTGGTGCATTTATAATCAAGGAATTTATCTTTGTTGATGCTGCTGTCCACCTTAAGGGAAAATCACTTGACATATTGGTTGTCAACTCTTTTGGATCTGCATATCAGGCTCTTTTTGTACTTCTATTTCTACCTTTCTTATCCAATATGAGAGGCATACCATTTGCCCAACTTCCTACATATCTAAAAGACGGTGCTGGTTGCTTTCTGAATATTGGAGCTGGTGCATCAGGTTGCAATGGAGCTCCATTGCTCCCCCTGCTTTATGTAGCTGCCAATCTGTTGTTCAATATATCCTTGATGAATGTAGTAAAGATTTCTTCGGCAGTCGTTTCTTCTCTCGTTGTGATGTTGTCAGTGCCAATCTCGATTTATGTTCTTTCCCTTCCATTGCCATATCTCCAAGAGGGTGCAACTTTGAGCCCTTTTTTCCTCTTTGGTAGTGCAATTCTTGTCTTGGGTCTTATTCTGTACAGCATACCCCAGCCTGCCAAGGATGTTGCTAAAATTAATTGA

Protein Analysis

429

Amino Acids

46.0

Weight (kDa)

10.11

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRT-like PF08627 94 - 416 3.8e-39 CRT-like, chloroquine-resistance transporter-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 788
Acc65I GGTACC 1 cut(s) 432
AccB1I GGYRCC 2 cut(s) 432, 497
AccI GTMKAC 1 cut(s) 263
AccII CGCG 2 cut(s) 195, 276
AciI CCGC 4 cut(s) 98, 195, 201, 696
AclWI GGATC 2 cut(s) 198, 877
AcoI YGGCCR 3 cut(s) 489, 558, 709
AcsI RAATTY 1 cut(s) 797
AcyI GRCGYC 2 cut(s) 17, 124
AfaI GTAC 4 cut(s) 425, 434, 894, 1247
AfeI AGCGCT 1 cut(s) 681
AfiI CCNNNNNNNGG 2 cut(s) 187, 829
AflII CTTAAG 1 cut(s) 827
AflIII ACRYGT 1 cut(s) 274
AgsI TTSAA 5 cut(s) 270, 417, 762, 773, 1063
AjnI CCWGG 1 cut(s) 203
AjuI GAANNNNNNNTTGG 2 cut(s) 1043, 1075
Alw21I GWGCWC 2 cut(s) 290, 1021
AlwI GGATC 2 cut(s) 198, 877
Aor51HI AGCGCT 1 cut(s) 681
AoxI GGCC 5 cut(s) 95, 489, 558, 709, 740
ApeKI GCWGC 7 cut(s) 220, 521, 533, 595, 654, 815, 1046
ApoI RAATTY 1 cut(s) 797
AseI ATTAAT 1 cut(s) 1284
Asp718I GGTACC 1 cut(s) 432
AspLEI GCGC 3 cut(s) 65, 210, 682
AspS9I GGNCC 2 cut(s) 197, 554
AsuC2I CCSGG 1 cut(s) 552
AsuHPI GGTGA 3 cut(s) 122, 376, 460
AsuNHI GCTAGC 1 cut(s) 682
AvaII GGWCC 2 cut(s) 197, 554
BalI TGGCCA 2 cut(s) 491, 711
BanI GGYRCC 2 cut(s) 432, 497
BanII GRGCYC 3 cut(s) 290, 1021, 1199
BarI GAAGNNNNNNTAC 2 cut(s) 531, 563
BbsI GAAGAC 1 cut(s) 319
Bbv12I GWGCWC 2 cut(s) 290, 1021
BbvI GCAGC 7 cut(s) 207, 508, 520, 607, 641, 802, 1033
BccI CCATC 2 cut(s) 141, 523
BceAI ACGGC 3 cut(s) 30, 296, 521
BciT130I CCWGG 1 cut(s) 205
BcnI CCSGG 1 cut(s) 552
BfaI CTAG 1 cut(s) 683
BfmI CTRYAG 1 cut(s) 669
BfoI RGCGCY 1 cut(s) 683
BfrI CTTAAG 1 cut(s) 827
BglI GCCNNNNNGGC 1 cut(s) 739
BisI GCNGC 8 cut(s) 98, 221, 522, 534, 596, 655, 816, 1047
BlsI GCNGC 8 cut(s) 99, 222, 523, 535, 597, 656, 817, 1048
Bme1390I CCNGG 2 cut(s) 205, 552
Bme18I GGWCC 2 cut(s) 197, 554
BmgT120I GGNCC 2 cut(s) 197, 554
BmiI GGNNCC 4 cut(s) 7, 199, 434, 499
BmrFI CCNGG 2 cut(s) 205, 552
BmsI GCATC 6 cut(s) 496, 626, 666, 705, 802, 1010
BmtI GCTAGC 1 cut(s) 686
BpiI GAAGAC 1 cut(s) 319
BpmI CTGGAG 1 cut(s) 744
BpuEI CTTGAG 1 cut(s) 76
BpuMI CCSGG 1 cut(s) 552
BsaHI GRCGYC 2 cut(s) 17, 124
BsaJI CCNNGG 3 cut(s) 116, 501, 1266
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 829
Bse118I RCCGGY 1 cut(s) 556
Bse3DI GCAATG 5 cut(s) 217, 300, 1018, 1022, 1163
BseBI CCWGG 1 cut(s) 205
BseDI CCNNGG 3 cut(s) 116, 501, 1266
BseGI GGATG 5 cut(s) 112, 511, 534, 657, 1276
BseLI CCNNNNNNNGG 2 cut(s) 187, 829
BseMI GCAATG 5 cut(s) 217, 300, 1018, 1022, 1163
BseRI GAGGAG 2 cut(s) 23, 241
BseXI GCAGC 7 cut(s) 207, 508, 520, 607, 641, 802, 1033
BseYI CCCAGC 4 cut(s) 241, 524, 598, 1257
BsgI GTGCAG 1 cut(s) 206
Bsh1236I CGCG 2 cut(s) 195, 276
Bsh1285I CGRYCG 1 cut(s) 234
BshFI GGCC 5 cut(s) 97, 491, 560, 711, 742
BshNI GGYRCC 2 cut(s) 432, 497
BsiEI CGRYCG 1 cut(s) 234
BsiHKAI GWGCWC 2 cut(s) 290, 1021
BsiSI CCGG 2 cut(s) 552, 557
BslI CCNNNNNNNGG 2 cut(s) 187, 829
BsnI GGCC 5 cut(s) 97, 491, 560, 711, 742
Bsp1286I GDGCHC 3 cut(s) 290, 1021, 1199
Bsp1407I TGTACA 1 cut(s) 1245
Bsp143I GATC 2 cut(s) 190, 869
BspACI CCGC 4 cut(s) 98, 195, 201, 696
BspANI GGCC 5 cut(s) 97, 491, 560, 711, 742
BspFNI CGCG 2 cut(s) 195, 276
BspLI GGNNCC 4 cut(s) 7, 199, 434, 499
BspOI GCTAGC 1 cut(s) 686
BspPI GGATC 2 cut(s) 198, 877
BspT107I GGYRCC 2 cut(s) 432, 497
BspTI CTTAAG 1 cut(s) 827
BsrDI GCAATG 5 cut(s) 217, 300, 1018, 1022, 1163
BsrFI RCCGGY 1 cut(s) 556
BsrGI TGTACA 1 cut(s) 1245
BssAI RCCGGY 1 cut(s) 556
BssECI CCNNGG 3 cut(s) 116, 501, 1266
BssMI GATC 2 cut(s) 190, 869
BssNI GRCGYC 2 cut(s) 17, 124
BssT1I CCWWGG 2 cut(s) 501, 1266
Bst2UI CCWGG 1 cut(s) 205
Bst4CI ACNGT 5 cut(s) 174, 423, 432, 437, 968
BstACI GRCGYC 2 cut(s) 17, 124
BstAFI CTTAAG 1 cut(s) 827
BstAUI TGTACA 1 cut(s) 1245
BstC8I GCNNGC 5 cut(s) 225, 339, 684, 694, 1263
BstEII GGTNACC 1 cut(s) 448
BstF5I GGATG 5 cut(s) 112, 511, 534, 657, 1276
BstFNI CGCG 2 cut(s) 195, 276
BstH2I RGCGCY 1 cut(s) 683
BstHHI GCGC 3 cut(s) 65, 210, 682
BstKTI GATC 2 cut(s) 193, 872
BstMBI GATC 2 cut(s) 190, 869
BstMCI CGRYCG 1 cut(s) 234
BstNI CCWGG 1 cut(s) 205
BstPI GGTNACC 1 cut(s) 448
BstSCI CCNGG 2 cut(s) 203, 550
BstSFI CTRYAG 1 cut(s) 669
BstUI CGCG 2 cut(s) 195, 276
BstV1I GCAGC 7 cut(s) 207, 508, 520, 607, 641, 802, 1033
BstV2I GAAGAC 1 cut(s) 319
BstX2I RGATCY 1 cut(s) 869
BstYI RGATCY 1 cut(s) 869
BsuRI GGCC 5 cut(s) 97, 491, 560, 711, 742
BtsCI GGATG 5 cut(s) 112, 511, 534, 657, 1276
BtsIMutI CAGTG 1 cut(s) 1137
Cac8I GCNNGC 5 cut(s) 225, 339, 684, 694, 1263
CfoI GCGC 3 cut(s) 65, 210, 682
Cfr10I RCCGGY 1 cut(s) 556
Cfr13I GGNCC 2 cut(s) 197, 554
CpoI CGGWCCG 1 cut(s) 554
CseI GACGC 3 cut(s) 6, 113, 265
Csp6I GTAC 4 cut(s) 424, 433, 893, 1246
CspI CGGWCCG 1 cut(s) 554
CviAII CATG 2 cut(s) 352, 544
CviQI GTAC 4 cut(s) 424, 433, 893, 1246
DpnI GATC 2 cut(s) 192, 871
DpnII GATC 2 cut(s) 190, 869
EaeI YGGCCR 3 cut(s) 489, 558, 709
Ecl136II GAGCTC 2 cut(s) 288, 1019
Eco130I CCWWGG 2 cut(s) 501, 1266
Eco24I GRGCYC 3 cut(s) 290, 1021, 1199
Eco47I GGWCC 2 cut(s) 197, 554
Eco47III AGCGCT 1 cut(s) 681
Eco53kI GAGCTC 2 cut(s) 288, 1019
Eco91I GGTNACC 1 cut(s) 448
EcoICRI GAGCTC 2 cut(s) 288, 1019
EcoO65I GGTNACC 1 cut(s) 448
EcoRII CCWGG 1 cut(s) 203
EcoT14I CCWWGG 2 cut(s) 501, 1266
EcoT38I GRGCYC 3 cut(s) 290, 1021, 1199
ErhI CCWWGG 2 cut(s) 501, 1266
FaeI CATG 2 cut(s) 355, 547
FatI CATG 2 cut(s) 351, 543
FauI CCCGC 2 cut(s) 208, 689
FblI GTMKAC 1 cut(s) 263
Fnu4HI GCNGC 8 cut(s) 98, 221, 522, 534, 596, 655, 816, 1047
FokI GGATG 5 cut(s) 99, 518, 541, 644, 1283
FriOI GRGCYC 3 cut(s) 290, 1021, 1199
Fsp4HI GCNGC 8 cut(s) 98, 221, 522, 534, 596, 655, 816, 1047
FspBI CTAG 1 cut(s) 683
GlaI GCGC 3 cut(s) 64, 209, 681
GluI GCNGC 8 cut(s) 98, 221, 522, 534, 596, 655, 816, 1047
GsaI CCCAGC 4 cut(s) 245, 528, 602, 1261
GsuI CTGGAG 1 cut(s) 744
HaeII RGCGCY 1 cut(s) 683
HaeIII GGCC 5 cut(s) 97, 491, 560, 711, 742
HapII CCGG 2 cut(s) 552, 557
HgaI GACGC 3 cut(s) 6, 113, 265
HhaI GCGC 3 cut(s) 65, 210, 682
Hin1I GRCGYC 2 cut(s) 17, 124
Hin1II CATG 2 cut(s) 355, 547
Hin6I GCGC 3 cut(s) 63, 208, 680
HinP1I GCGC 3 cut(s) 63, 208, 680
HincII GTYRAC 3 cut(s) 264, 297, 859
HindII GTYRAC 3 cut(s) 264, 297, 859
HinfI GANTC 3 cut(s) 516, 574, 704
HpaII CCGG 2 cut(s) 552, 557
HphI GGTGA 3 cut(s) 122, 376, 460
Hpy166II GTNNAC 4 cut(s) 264, 297, 823, 859
Hpy188I TCNGA 7 cut(s) 117, 190, 515, 579, 645, 703, 984
Hpy188III TCNNGA 2 cut(s) 723, 1141
Hpy8I GTNNAC 4 cut(s) 264, 297, 823, 859
Hpy99I CGWCG 5 cut(s) 22, 141, 265, 281, 317
HpyAV CCTTC 4 cut(s) 54, 400, 479, 1169
HpyCH4III ACNGT 5 cut(s) 174, 423, 432, 437, 968
HpyCH4V TGCA 9 cut(s) 223, 639, 657, 782, 875, 1001, 1011, 1187, 1220
Hsp92I GRCGYC 2 cut(s) 17, 124
Hsp92II CATG 2 cut(s) 355, 547
HspAI GCGC 3 cut(s) 63, 208, 680
KpnI GGTACC 1 cut(s) 436
Kzo9I GATC 2 cut(s) 190, 869
LmnI GCTCC 7 cut(s) 36, 293, 484, 992, 1016, 1024, 1032
Lsp1109I GCAGC 7 cut(s) 207, 508, 520, 607, 641, 802, 1033
LweI GCATC 6 cut(s) 496, 626, 666, 705, 802, 1010
MaeI CTAG 1 cut(s) 683
MaeIII GTNAC 1 cut(s) 448
MalI GATC 2 cut(s) 192, 871
MboI GATC 2 cut(s) 190, 869
MboII GAAGA 6 cut(s) 95, 319, 367, 600, 1086, 1101
MflI RGATCY 1 cut(s) 869
MhlI GDGCHC 3 cut(s) 290, 1021, 1199
MlsI TGGCCA 2 cut(s) 491, 711
MluCI AATT 5 cut(s) 380, 797, 1221, 1281, 1285
MluI ACGCGT 1 cut(s) 274
MluNI TGGCCA 2 cut(s) 491, 711
MlyI GAGTC 2 cut(s) 525, 583
Mox20I TGGCCA 2 cut(s) 491, 711
MscI TGGCCA 2 cut(s) 491, 711
MseI TTAA 2 cut(s) 828, 1284
Msp20I TGGCCA 2 cut(s) 491, 711
MspA1I CMGCKG 1 cut(s) 598
MspCI CTTAAG 1 cut(s) 827
MspI CCGG 2 cut(s) 552, 557
MspR9I CCNGG 2 cut(s) 205, 552
MvaI CCWGG 1 cut(s) 205
MvnI CGCG 2 cut(s) 195, 276
NciI CCSGG 1 cut(s) 552
NdeII GATC 2 cut(s) 190, 869
NheI GCTAGC 1 cut(s) 682
NlaIII CATG 2 cut(s) 355, 547
NlaIV GGNNCC 4 cut(s) 7, 199, 434, 499
NmuCI GTSAC 1 cut(s) 448
PfeI GAWTC 1 cut(s) 704
PfoI TCCNGGA 1 cut(s) 550
PkrI GCNGC 8 cut(s) 99, 222, 523, 535, 597, 656, 817, 1048
PleI GAGTC 2 cut(s) 524, 582
PpsI GAGTC 2 cut(s) 524, 582
PshBI ATTAAT 1 cut(s) 1284
PsiI TTATAA 1 cut(s) 788
Psp124BI GAGCTC 2 cut(s) 290, 1021
Psp6I CCWGG 1 cut(s) 203
PspEI GGTNACC 1 cut(s) 448
PspFI CCCAGC 4 cut(s) 241, 524, 598, 1257
PspGI CCWGG 1 cut(s) 203
PspN4I GGNNCC 4 cut(s) 7, 199, 434, 499
PspPI GGNCC 2 cut(s) 197, 554
PsuI RGATCY 1 cut(s) 869
PvuII CAGCTG 1 cut(s) 598
RsaI GTAC 4 cut(s) 425, 434, 894, 1247
RsaNI GTAC 4 cut(s) 424, 433, 893, 1246
Rsr2I CGGWCCG 1 cut(s) 554
RsrII CGGWCCG 1 cut(s) 554
SacI GAGCTC 2 cut(s) 290, 1021
SalI GTCGAC 1 cut(s) 262
SaqAI TTAA 2 cut(s) 828, 1284
SatI GCNGC 8 cut(s) 98, 221, 522, 534, 596, 655, 816, 1047
Sau3AI GATC 2 cut(s) 190, 869
Sau96I GGNCC 2 cut(s) 197, 554
SchI GAGTC 2 cut(s) 525, 583
ScrFI CCNGG 2 cut(s) 205, 552
SduI GDGCHC 3 cut(s) 290, 1021, 1199
SfaNI GCATC 6 cut(s) 496, 626, 666, 705, 802, 1010
SfcI CTRYAG 1 cut(s) 669
SinI GGWCC 2 cut(s) 197, 554
SmlI CTYRAG 2 cut(s) 91, 827
SmoI CTYRAG 2 cut(s) 91, 827
Sse9I AATT 5 cut(s) 380, 797, 1221, 1281, 1285
SsiI CCGC 4 cut(s) 98, 195, 201, 696
SspI AATATT 1 cut(s) 988
SspMI CTAG 1 cut(s) 683
SstI GAGCTC 2 cut(s) 290, 1021
StyD4I CCNGG 2 cut(s) 203, 550
StyI CCWWGG 2 cut(s) 501, 1266
TaaI ACNGT 5 cut(s) 174, 423, 432, 437, 968
TaqI TCGA 2 cut(s) 263, 1142
TaqII GACCGA 2 cut(s) 220, 467
TasI AATT 5 cut(s) 380, 797, 1221, 1281, 1285
TatI WGTACW 2 cut(s) 892, 1245
TauI GCSGC 1 cut(s) 100
TfiI GAWTC 1 cut(s) 704
Tru1I TTAA 2 cut(s) 828, 1284
Tru9I TTAA 2 cut(s) 828, 1284
TscAI CASTG 1 cut(s) 1137
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 7 cut(s) 220, 521, 533, 595, 654, 815, 1046
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 4 cut(s) 101, 368, 471, 1091
TspGWI ACGGA 1 cut(s) 249
TspRI CASTG 1 cut(s) 1137
Vha464I CTTAAG 1 cut(s) 827
VpaK11BI GGWCC 2 cut(s) 197, 554
VspI ATTAAT 1 cut(s) 1284
XapI RAATTY 1 cut(s) 797
XcmI CCANNNNNNNNNTGG 3 cut(s) 56, 499, 719
XmiI GTMKAC 1 cut(s) 263
XspI CTAG 1 cut(s) 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.