Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0003123

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG414300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGCGATTGAAATTGTGGGTTTTTTGTTTGCTGAGTTATGTGGTGATATATTTCTCAATATTGTACATACGGTACCGTTCTGGGATTGTGACTGACGAAATGCTAAGGCTTCCGAAATTGCGGTTCGTGGCCATCGGGGCCTTGGAGGCCCTTGGAGTGGCTTCTGGGATGGCTGCTGCAGCCATGCTTCCCGGACCGGCCATACCCATATTGAGTCAGACATTTTTGGTGTGGCAGCTTGGTTTTTCTTCTCTTATCTTGGGAAGATCATACAGAATCAATCAGATTGTTGGCTGTATCCTCGTAGCTGCAGGTGTAGCGCTAGCTGTTGCTAGTGGGAAAGATTCTGGCCAGATGCTATCTGGAGTTGAGTCTGTGTGGCCATTACTCATGATTTCTTCAAGTGCTTTTCAAGCTGGTGCATCTATAATCAAGGAATTCGTCTTTGTTGATGCTGCAGTCCACTTAAAGGGAAAATCACTTGACATATTTGTTGTCAACTCTTTTGGATCTGGATTTCAGGCTCTTTTTGTACTTCTATTTCTACCTTTCTTATCAAATATGAGAGGCATACCATTCGCCCAACTTCCTACATATCTAAAAGATGGTGCTGGTTGCTTTCTCAATATGGGAGCTGCTGCATCAGGTTGTAATGGGGCTCCATTGCTTCCGCTGCTTTACATAGCTGCCAATCTGTTGTTCAACATAAGCTTGCTGAATGTAGTAAAGATCTCATCCGCGGTTGTTGCTTCTCTCATTGTGATGTTGTCAGTGCCAATCTCGATTTATGTTCTTTCCCTTCCATTGCCATATCTCCAAGAGGGTGCAACTTTGAGCCCCTTTTTCCTCTTTGGTAGTGCGATTCTTGTCTTGGGTCTTATTCTGTACAGCATACCCCAGCCTGGCAAGGATGGCTCTAAAATTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006857 GO:0006950 GO:0006952 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0010035 GO:0010038 GO:0015711 GO:0015833 GO:0034635 GO:0042221 GO:0042886 GO:0042939 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0051704 GO:0051707 GO:0071702 GO:0071705 GO:0072337 GO:0072348 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRT-like

Protein Analysis

309

Amino Acids

32.88

Weight (kDa)

9.3

Isoelectric Point (pI)

27.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRT-like	PF08627	12 - 296	2.3e-25	CRT-like, chloroquine-resistance transporter-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24460 AT4G24460 AT4G24460 AT4G24460
fragaria_vesca	FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370
malus_domestica	MD02G1042100.v1.1 MD08G1202100.v1.1 MD08G1202700.v1.1 MD08G1202800.v1.1
prunus_persica	Prupe.1G535300_v2.0.a1 Prupe.1G535300_v2.0.a1
pyrus_communis	pycom08g17510
rosa_chinensis	RchiOBHm_Chr7g0234941 RchiOBHm_Chr7g0234951 RchiOBHm_Chr7g0234961
rosa_laevigata	RLG00000001190 RLG00000001191
rosa_multiflora	Rmu_sc0000039.1_g000013 Rmu_sc0000039.1_g000014 Rmu_sc0000768.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226420 Rroxscaffold_3G00226430
rosa_rugosa	Rorug07G0286700
rosa_samantha	Rh7AG441400 Rh7AG441500 Rh7BG414300 Rh7CG462800 Rh7DG431000
rosa_wichuraiana	Rw7G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	302
Acc36I	ACCTGC	1 cut(s)	302
Acc65I	GGTACC	1 cut(s)	72
AccB1I	GGYRCC	1 cut(s)	72
AccII	CGCG	1 cut(s)	740
AciI	CCGC	4 cut(s)	121, 671, 738, 740
AclWI	GGATC	1 cut(s)	517
AcoI	YGGCCR	4 cut(s)	129, 198, 349, 380
AcsI	RAATTY	1 cut(s)	437
AfaI	GTAC	4 cut(s)	65, 74, 534, 887
AfeI	AGCGCT	1 cut(s)	321
AfiI	CCNNNNNNNGG	3 cut(s)	157, 469, 902
AgsI	TTSAA	4 cut(s)	10, 402, 413, 703
AjnI	CCWGG	1 cut(s)	901
AjuI	GAANNNNNNNTTGG	2 cut(s)	683, 715
AluBI	AGCT	7 cut(s)	238, 308, 326, 416, 635, 686, 711
AluI	AGCT	7 cut(s)	238, 308, 326, 416, 635, 686, 711
AlwI	GGATC	1 cut(s)	517
Aor51HI	AGCGCT	1 cut(s)	321
AoxI	GGCC	6 cut(s)	129, 138, 147, 198, 349, 380
ApoI	RAATTY	1 cut(s)	437
AseI	ATTAAT	1 cut(s)	924
Asp718I	GGTACC	1 cut(s)	72
AspLEI	GCGC	1 cut(s)	322
AspS9I	GGNCC	3 cut(s)	138, 148, 194
AsuC2I	CCSGG	1 cut(s)	192
AsuHPI	GGTGA	1 cut(s)	55
AsuNHI	GCTAGC	1 cut(s)	322
AvaII	GGWCC	1 cut(s)	194
BalI	TGGCCA	3 cut(s)	131, 351, 382
BanI	GGYRCC	1 cut(s)	72
BanII	GRGCYC	2 cut(s)	661, 839
BccI	CCATC	4 cut(s)	140, 163, 599, 905
BcgI	CGANNNNNNTGC	2 cut(s)	559, 593
BciT130I	CCWGG	1 cut(s)	903
BciVI	GTATCC	1 cut(s)	308
BcnI	CCSGG	1 cut(s)	192
BfaI	CTAG	2 cut(s)	323, 333
BfmI	CTRYAG	3 cut(s)	177, 309, 456
BfoI	RGCGCY	1 cut(s)	323
BfuAI	ACCTGC	1 cut(s)	302
BfuI	GTATCC	1 cut(s)	308
BglI	GCCNNNNNGGC	2 cut(s)	137, 146
BglII	AGATCT	1 cut(s)	729
Bme1390I	CCNGG	2 cut(s)	192, 903
Bme18I	GGWCC	1 cut(s)	194
BmgT120I	GGNCC	3 cut(s)	138, 148, 194
BmiI	GGNNCC	3 cut(s)	74, 139, 660
BmrFI	CCNGG	2 cut(s)	192, 903
BmsI	GCATC	4 cut(s)	345, 431, 442, 650
BmtI	GCTAGC	1 cut(s)	326
BpmI	CTGGAG	1 cut(s)	384
Bpu10I	CCTNAGC	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	192
BsaJI	CCNNGG	3 cut(s)	141, 151, 738
Bsc4I	CCNNNNNNNGG	3 cut(s)	157, 469, 902
Bse118I	RCCGGY	1 cut(s)	196
Bse3DI	GCAATG	2 cut(s)	662, 803
BseBI	CCWGG	1 cut(s)	903
BseDI	CCNNGG	3 cut(s)	141, 151, 738
BseGI	GGATG	3 cut(s)	174, 734, 916
BseLI	CCNNNNNNNGG	3 cut(s)	157, 469, 902
BseMI	GCAATG	2 cut(s)	662, 803
BseMII	CTCAG	1 cut(s)	23
BseYI	CCCAGC	1 cut(s)	897
Bsh1236I	CGCG	1 cut(s)	740
BshFI	GGCC	6 cut(s)	131, 140, 149, 200, 351, 382
BshNI	GGYRCC	1 cut(s)	72
BsiSI	CCGG	2 cut(s)	192, 197
BslI	CCNNNNNNNGG	3 cut(s)	157, 469, 902
BsnI	GGCC	6 cut(s)	131, 140, 149, 200, 351, 382
Bsp1286I	GDGCHC	2 cut(s)	661, 839
Bsp1407I	TGTACA	2 cut(s)	63, 885
Bsp143I	GATC	3 cut(s)	266, 509, 729
BspACI	CCGC	4 cut(s)	121, 671, 738, 740
BspANI	GGCC	6 cut(s)	131, 140, 149, 200, 351, 382
BspCNI	CTCAG	1 cut(s)	24
BspFNI	CGCG	1 cut(s)	740
BspHI	TCATGA	1 cut(s)	390
BspLI	GGNNCC	3 cut(s)	74, 139, 660
BspMAI	CTGCAG	3 cut(s)	181, 313, 460
BspMI	ACCTGC	1 cut(s)	302
BspOI	GCTAGC	1 cut(s)	326
BspPI	GGATC	1 cut(s)	517
BspT107I	GGYRCC	1 cut(s)	72
BsrDI	GCAATG	2 cut(s)	662, 803
BsrFI	RCCGGY	1 cut(s)	196
BsrGI	TGTACA	2 cut(s)	63, 885
BssAI	RCCGGY	1 cut(s)	196
BssECI	CCNNGG	3 cut(s)	141, 151, 738
BssMI	GATC	3 cut(s)	266, 509, 729
BssT1I	CCWWGG	2 cut(s)	141, 151
Bst2UI	CCWGG	1 cut(s)	903
Bst4CI	ACNGT	2 cut(s)	72, 77
BstAUI	TGTACA	2 cut(s)	63, 885
BstC8I	GCNNGC	2 cut(s)	324, 713
BstDEI	CTNAG	2 cut(s)	32, 104
BstDSI	CCRYGG	1 cut(s)	738
BstF5I	GGATG	3 cut(s)	174, 734, 916
BstFNI	CGCG	1 cut(s)	740
BstH2I	RGCGCY	1 cut(s)	323
BstHHI	GCGC	1 cut(s)	322
BstKTI	GATC	3 cut(s)	269, 512, 732
BstMBI	GATC	3 cut(s)	266, 509, 729
BstMWI	GCNNNNNNNGC	8 cut(s)	137, 146, 179, 317, 413, 673, 746, 912
BstNI	CCWGG	1 cut(s)	903
BstSCI	CCNGG	2 cut(s)	190, 901
BstSFI	CTRYAG	3 cut(s)	177, 309, 456
BstUI	CGCG	1 cut(s)	740
BstX2I	RGATCY	2 cut(s)	509, 729
BstYI	RGATCY	2 cut(s)	509, 729
BsuI	GTATCC	1 cut(s)	308
BsuRI	GGCC	6 cut(s)	131, 140, 149, 200, 351, 382
BtgI	CCRYGG	1 cut(s)	738
BtsCI	GGATG	3 cut(s)	174, 734, 916
BtsIMutI	CAGTG	1 cut(s)	777
BveI	ACCTGC	1 cut(s)	302
Cac8I	GCNNGC	2 cut(s)	324, 713
CciI	TCATGA	1 cut(s)	390
CfoI	GCGC	1 cut(s)	322
Cfr10I	RCCGGY	1 cut(s)	196
Cfr13I	GGNCC	3 cut(s)	138, 148, 194
Cfr42I	CCGCGG	1 cut(s)	741
CpoI	CGGWCCG	1 cut(s)	194
Csp6I	GTAC	4 cut(s)	64, 73, 533, 886
CspI	CGGWCCG	1 cut(s)	194
CviAII	CATG	2 cut(s)	184, 391
CviQI	GTAC	4 cut(s)	64, 73, 533, 886
DdeI	CTNAG	2 cut(s)	32, 104
DpnI	GATC	3 cut(s)	268, 511, 731
DpnII	GATC	3 cut(s)	266, 509, 729
EaeI	YGGCCR	4 cut(s)	129, 198, 349, 380
Eco130I	CCWWGG	2 cut(s)	141, 151
Eco24I	GRGCYC	2 cut(s)	661, 839
Eco47I	GGWCC	1 cut(s)	194
Eco47III	AGCGCT	1 cut(s)	321
EcoO109I	RGGNCCY	2 cut(s)	138, 148
EcoRI	GAATTC	1 cut(s)	437
EcoRII	CCWGG	1 cut(s)	901
EcoT14I	CCWWGG	2 cut(s)	141, 151
EcoT38I	GRGCYC	2 cut(s)	661, 839
ErhI	CCWWGG	2 cut(s)	141, 151
FaeI	CATG	2 cut(s)	187, 394
FatI	CATG	2 cut(s)	183, 390
FokI	GGATG	3 cut(s)	181, 721, 923
FriOI	GRGCYC	2 cut(s)	661, 839
FspBI	CTAG	2 cut(s)	323, 333
GlaI	GCGC	1 cut(s)	321
GsaI	CCCAGC	1 cut(s)	901
GsuI	CTGGAG	1 cut(s)	384
HaeII	RGCGCY	1 cut(s)	323
HaeIII	GGCC	6 cut(s)	131, 140, 149, 200, 351, 382
HapII	CCGG	2 cut(s)	192, 197
HhaI	GCGC	1 cut(s)	322
Hin1II	CATG	2 cut(s)	187, 394
Hin6I	GCGC	1 cut(s)	320
HinP1I	GCGC	1 cut(s)	320
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HindIII	AAGCTT	1 cut(s)	709
HinfI	GANTC	5 cut(s)	214, 276, 344, 371, 862
HpaII	CCGG	2 cut(s)	192, 197
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	2 cut(s)	463, 499
Hpy188I	TCNGA	3 cut(s)	114, 219, 285
Hpy188III	TCNNGA	4 cut(s)	363, 391, 513, 781
Hpy8I	GTNNAC	2 cut(s)	463, 499
HpyAV	CCTTC	1 cut(s)	809
HpyCH4III	ACNGT	2 cut(s)	72, 77
HpyCH4V	TGCA	6 cut(s)	179, 311, 422, 458, 641, 827
HpyF10VI	GCNNNNNNNGC	8 cut(s)	137, 146, 179, 317, 413, 673, 746, 912
HpyF3I	CTNAG	2 cut(s)	32, 104
Hsp92II	CATG	2 cut(s)	187, 394
HspAI	GCGC	1 cut(s)	320
KpnI	GGTACC	1 cut(s)	76
KspI	CCGCGG	1 cut(s)	741
Kzo9I	GATC	3 cut(s)	266, 509, 729
LmnI	GCTCC	2 cut(s)	632, 664
LweI	GCATC	4 cut(s)	345, 431, 442, 650
MaeI	CTAG	2 cut(s)	323, 333
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	3 cut(s)	268, 511, 731
MboI	GATC	3 cut(s)	266, 509, 729
MboII	GAAGA	3 cut(s)	240, 276, 390
MflI	RGATCY	2 cut(s)	509, 729
MhlI	GDGCHC	2 cut(s)	661, 839
MlsI	TGGCCA	3 cut(s)	131, 351, 382
MluCI	AATT	5 cut(s)	11, 116, 437, 921, 925
MluNI	TGGCCA	3 cut(s)	131, 351, 382
MlyI	GAGTC	2 cut(s)	223, 380
MnlI	CCTC	5 cut(s)	139, 311, 560, 814, 857
Mox20I	TGGCCA	3 cut(s)	131, 351, 382
MscI	TGGCCA	3 cut(s)	131, 351, 382
MseI	TTAA	2 cut(s)	467, 924
MslI	CAYNNNNRTG	1 cut(s)	761
Msp20I	TGGCCA	3 cut(s)	131, 351, 382
MspA1I	CMGCKG	2 cut(s)	673, 740
MspI	CCGG	2 cut(s)	192, 197
MspR9I	CCNGG	2 cut(s)	192, 903
MvaI	CCWGG	1 cut(s)	903
MvnI	CGCG	1 cut(s)	740
MwoI	GCNNNNNNNGC	8 cut(s)	137, 146, 179, 317, 413, 673, 746, 912
NciI	CCSGG	1 cut(s)	192
NdeII	GATC	3 cut(s)	266, 509, 729
NheI	GCTAGC	1 cut(s)	322
NlaIII	CATG	2 cut(s)	187, 394
NlaIV	GGNNCC	3 cut(s)	74, 139, 660
NmuCI	GTSAC	1 cut(s)	88
PagI	TCATGA	1 cut(s)	390
PaqCI	CACCTGC	1 cut(s)	302
PfeI	GAWTC	3 cut(s)	276, 344, 862
PfoI	TCCNGGA	1 cut(s)	190
PleI	GAGTC	2 cut(s)	222, 379
PpsI	GAGTC	2 cut(s)	222, 379
PshBI	ATTAAT	1 cut(s)	924
Psp6I	CCWGG	1 cut(s)	901
PspFI	CCCAGC	1 cut(s)	897
PspGI	CCWGG	1 cut(s)	901
PspN4I	GGNNCC	3 cut(s)	74, 139, 660
PspPI	GGNCC	3 cut(s)	138, 148, 194
PstI	CTGCAG	3 cut(s)	181, 313, 460
PsuI	RGATCY	2 cut(s)	509, 729
RsaI	GTAC	4 cut(s)	65, 74, 534, 887
RsaNI	GTAC	4 cut(s)	64, 73, 533, 886
RseI	CAYNNNNRTG	1 cut(s)	761
Rsr2I	CGGWCCG	1 cut(s)	194
RsrII	CGGWCCG	1 cut(s)	194
SacII	CCGCGG	1 cut(s)	741
SaqAI	TTAA	2 cut(s)	467, 924
Sau3AI	GATC	3 cut(s)	266, 509, 729
Sau96I	GGNCC	3 cut(s)	138, 148, 194
SchI	GAGTC	2 cut(s)	223, 380
ScrFI	CCNGG	2 cut(s)	192, 903
SduI	GDGCHC	2 cut(s)	661, 839
SfaNI	GCATC	4 cut(s)	345, 431, 442, 650
SfcI	CTRYAG	3 cut(s)	177, 309, 456
SfiI	GGCCNNNNNGGCC	2 cut(s)	137, 146
Sfr303I	CCGCGG	1 cut(s)	741
SgrBI	CCGCGG	1 cut(s)	741
SinI	GGWCC	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	761
Sse9I	AATT	5 cut(s)	11, 116, 437, 921, 925
SsiI	CCGC	4 cut(s)	121, 671, 738, 740
SspI	AATATT	1 cut(s)	60
SspMI	CTAG	2 cut(s)	323, 333
StyD4I	CCNGG	2 cut(s)	190, 901
StyI	CCWWGG	2 cut(s)	141, 151
TaaI	ACNGT	2 cut(s)	72, 77
TaqI	TCGA	1 cut(s)	782
TasI	AATT	5 cut(s)	11, 116, 437, 921, 925
TatI	WGTACW	3 cut(s)	63, 532, 885
TfiI	GAWTC	3 cut(s)	276, 344, 862
Tru1I	TTAA	2 cut(s)	467, 924
Tru9I	TTAA	2 cut(s)	467, 924
TscAI	CASTG	1 cut(s)	777
TseFI	GTSAC	1 cut(s)	88
Tsp45I	GTSAC	1 cut(s)	88
TspRI	CASTG	1 cut(s)	777
VpaK11BI	GGWCC	1 cut(s)	194
VspI	ATTAAT	1 cut(s)	924
XapI	RAATTY	1 cut(s)	437
XcmI	CCANNNNNNNNNTGG	2 cut(s)	139, 359
XspI	CTAG	2 cut(s)	323, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.