Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000039.1

Orthogroup ID

OG0003123

Physical Location & Seq

Genomic Coordinates Forward (+)

100756 .. 106275

Gene Structure 5520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000039.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

atgatgggtgcttcctctacgttgtcgtttcacaagttcctctccgtccccccttctctctctcacctcaaaaatggcgggacttccttcccttcctcctctccgacctcaatgccactcctccataggcctcgcccttctctcctccgcctccacactccaaacgcaccgtttcgcctcccctccgatcgcaaacccgccgcccgcaatgtcaagctccacgcttcactcccaaaccctcccccctcctcctccgcgatctcaaacggcgtcgttttcagctccgtgttgaccatagccctggccgtcgccaaccgcgttctctacaagctcgcactcgtccccatgaagaaccaccccttctttctggcccaattcataacctttggttatgtggtgatatatttctcaatattgtacatacggtaccgttctgggattgtgactgacgaaatgctaaggcttccgaaatcgcggttcgtggctatcggagccttagaggcccttggagtcgcttctgggatggctgctgcagccatgcttcccggaccggccatacccatattgagtcaggaatttgtctttgttgatgctgcggcccacttaaagggaaaatcacttgacatatttgttgtcaactctttcggatctggatttcaggctctttttgtgcttctatttctacctttcttatcaaatatgagaggcataccattcgcccaacttcctgcatatctaaaagatggtgctggttgctttctgaatatgggagctgctgcatcaggttgtaatggggctccattgcttccgctgctttacatagctgccaatctgttgttcaacataagcttgctgaatgtagtaaagatctcctccgcggttgttgcttctctcattgtgatgttgtcagtgccaatctcgatttacgttctttcccttccattgccatacctccaagagggtgcaactttgagccccttcttcctctttggtagtgcggttcttgtcttgggtcttattttgtacagcataccccaacctgccaaggatgtttctgaaattagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006857 GO:0006950 GO:0006952 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0010035 GO:0010038 GO:0015711 GO:0015833 GO:0034635 GO:0042221 GO:0042886 GO:0042939 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0051704 GO:0051707 GO:0071702 GO:0071705 GO:0072337 GO:0072348 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRT-like

Protein Analysis

355

Amino Acids

37.83

Weight (kDa)

9.93

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24460 AT4G24460 AT4G24460 AT4G24460
fragaria_vesca	FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370
malus_domestica	MD02G1042100.v1.1 MD08G1202100.v1.1 MD08G1202700.v1.1 MD08G1202800.v1.1
prunus_persica	Prupe.1G535300_v2.0.a1 Prupe.1G535300_v2.0.a1
pyrus_communis	pycom08g17510
rosa_chinensis	RchiOBHm_Chr7g0234941 RchiOBHm_Chr7g0234951 RchiOBHm_Chr7g0234961
rosa_laevigata	RLG00000001190 RLG00000001191
rosa_multiflora	Rmu_sc0000039.1_g000013 Rmu_sc0000039.1_g000014 Rmu_sc0000768.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226420 Rroxscaffold_3G00226430
rosa_rugosa	Rorug07G0286700
rosa_samantha	Rh7AG441400 Rh7AG441500 Rh7BG414300 Rh7CG462800 Rh7DG431000
rosa_wichuraiana	Rw7G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1048
Acc65I	GGTACC	1 cut(s)	426
AccB1I	GGYRCC	1 cut(s)	426
AccII	CGCG	4 cut(s)	257, 318, 475, 878
AclWI	GGATC	1 cut(s)	655
AcoI	YGGCCR	2 cut(s)	303, 552
AcsI	RAATTY	1 cut(s)	575
AcyI	GRCGYC	1 cut(s)	270
AfaI	GTAC	3 cut(s)	419, 428, 1025
AfiI	CCNNNNNNNGG	2 cut(s)	607, 958
AgsI	TTSAA	1 cut(s)	841
AjnI	CCWGG	1 cut(s)	300
AjuI	GAANNNNNNNTTGG	2 cut(s)	821, 853
AluBI	AGCT	6 cut(s)	217, 282, 331, 773, 824, 849
AluI	AGCT	6 cut(s)	217, 282, 331, 773, 824, 849
AlwI	GGATC	1 cut(s)	655
AoxI	GGCC	6 cut(s)	128, 303, 369, 501, 552, 597
ApeKI	GCWGC	8 cut(s)	527, 530, 533, 593, 773, 776, 811, 824
ApoI	RAATTY	1 cut(s)	575
Asp718I	GGTACC	1 cut(s)	426
AspS9I	GGNCC	4 cut(s)	370, 502, 548, 598
AsuC2I	CCSGG	1 cut(s)	546
AsuHPI	GGTGA	2 cut(s)	56, 409
AvaII	GGWCC	1 cut(s)	548
BanI	GGYRCC	1 cut(s)	426
BanII	GRGCYC	2 cut(s)	799, 977
BbvI	GCAGC	8 cut(s)	514, 517, 545, 580, 760, 763, 798, 811
BccI	CCATC	2 cut(s)	517, 737
BceAI	ACGGC	2 cut(s)	283, 290
BcgI	CGANNNNNNTGC	4 cut(s)	94, 128, 697, 731
BciT130I	CCWGG	1 cut(s)	302
BcnI	CCSGG	1 cut(s)	546
BfmI	CTRYAG	1 cut(s)	531
BfuAI	ACCTGC	1 cut(s)	1048
BglI	GCCNNNNNGGC	1 cut(s)	500
BglII	AGATCT	1 cut(s)	867
Bme1390I	CCNGG	2 cut(s)	302, 546
Bme18I	GGWCC	1 cut(s)	548
BmgT120I	GGNCC	4 cut(s)	370, 502, 548, 598
BmiI	GGNNCC	3 cut(s)	428, 493, 798
BmrFI	CCNGG	2 cut(s)	302, 546
BmsI	GCATC	2 cut(s)	580, 788
Bpu10I	CCTNAGC	1 cut(s)	458
BpuMI	CCSGG	1 cut(s)	546
BsaHI	GRCGYC	1 cut(s)	270
BsaJI	CCNNGG	4 cut(s)	300, 505, 876, 1044
Bsc4I	CCNNNNNNNGG	2 cut(s)	607, 958
Bse118I	RCCGGY	1 cut(s)	550
Bse3DI	GCAATG	3 cut(s)	214, 800, 941
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	4 cut(s)	300, 505, 876, 1044
BseGI	GGATG	2 cut(s)	528, 1054
BseLI	CCNNNNNNNGG	2 cut(s)	607, 958
BseMI	GCAATG	3 cut(s)	214, 800, 941
BseRI	GAGGAG	6 cut(s)	88, 110, 134, 238, 241, 862
BseXI	GCAGC	8 cut(s)	514, 517, 545, 580, 760, 763, 798, 811
Bsh1236I	CGCG	4 cut(s)	257, 318, 475, 878
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	6 cut(s)	130, 305, 371, 503, 554, 599
BshNI	GGYRCC	1 cut(s)	426
BsiEI	CGRYCG	1 cut(s)	190
BsiSI	CCGG	2 cut(s)	546, 551
BslFI	GGGAC	3 cut(s)	32, 94, 326
BslI	CCNNNNNNNGG	2 cut(s)	607, 958
BsmFI	GGGAC	3 cut(s)	32, 94, 326
BsnI	GGCC	6 cut(s)	130, 305, 371, 503, 554, 599
Bsp1286I	GDGCHC	2 cut(s)	799, 977
Bsp1407I	TGTACA	2 cut(s)	417, 1023
Bsp143I	GATC	4 cut(s)	187, 258, 647, 867
BspANI	GGCC	6 cut(s)	130, 305, 371, 503, 554, 599
BspFNI	CGCG	4 cut(s)	257, 318, 475, 878
BspLI	GGNNCC	3 cut(s)	428, 493, 798
BspMAI	CTGCAG	1 cut(s)	535
BspMI	ACCTGC	1 cut(s)	1048
BspPI	GGATC	1 cut(s)	655
BspT107I	GGYRCC	1 cut(s)	426
BsrDI	GCAATG	3 cut(s)	214, 800, 941
BsrFI	RCCGGY	1 cut(s)	550
BsrGI	TGTACA	2 cut(s)	417, 1023
BssAI	RCCGGY	1 cut(s)	550
BssECI	CCNNGG	4 cut(s)	300, 505, 876, 1044
BssMI	GATC	4 cut(s)	187, 258, 647, 867
BssNI	GRCGYC	1 cut(s)	270
BssT1I	CCWWGG	2 cut(s)	505, 1044
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	3 cut(s)	171, 426, 431
BstACI	GRCGYC	1 cut(s)	270
BstAUI	TGTACA	2 cut(s)	417, 1023
BstC8I	GCNNGC	3 cut(s)	205, 333, 851
BstDEI	CTNAG	2 cut(s)	458, 496
BstDSI	CCRYGG	1 cut(s)	876
BstENI	CCTNNNNNAGG	1 cut(s)	956
BstF5I	GGATG	2 cut(s)	528, 1054
BstFNI	CGCG	4 cut(s)	257, 318, 475, 878
BstKTI	GATC	4 cut(s)	190, 261, 650, 870
BstMBI	GATC	4 cut(s)	187, 258, 647, 867
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	5 cut(s)	491, 500, 533, 811, 884
BstNI	CCWGG	1 cut(s)	302
BstSCI	CCNGG	2 cut(s)	300, 544
BstSFI	CTRYAG	1 cut(s)	531
BstUI	CGCG	4 cut(s)	257, 318, 475, 878
BstV1I	GCAGC	8 cut(s)	514, 517, 545, 580, 760, 763, 798, 811
BstX2I	RGATCY	2 cut(s)	647, 867
BstXI	CCANNNNNNTGG	1 cut(s)	301
BstYI	RGATCY	2 cut(s)	647, 867
BsuRI	GGCC	6 cut(s)	130, 305, 371, 503, 554, 599
BtgI	CCRYGG	1 cut(s)	876
BtsCI	GGATG	2 cut(s)	528, 1054
BtsIMutI	CAGTG	1 cut(s)	915
BveI	ACCTGC	1 cut(s)	1048
Cac8I	GCNNGC	3 cut(s)	205, 333, 851
Cfr10I	RCCGGY	1 cut(s)	550
Cfr13I	GGNCC	4 cut(s)	370, 502, 548, 598
Cfr42I	CCGCGG	1 cut(s)	879
CpoI	CGGWCCG	1 cut(s)	548
CseI	GACGC	1 cut(s)	259
Csp6I	GTAC	3 cut(s)	418, 427, 1024
CspI	CGGWCCG	1 cut(s)	548
CviAII	CATG	2 cut(s)	346, 538
CviQI	GTAC	3 cut(s)	418, 427, 1024
DdeI	CTNAG	2 cut(s)	458, 496
DpnI	GATC	4 cut(s)	189, 260, 649, 869
DpnII	GATC	4 cut(s)	187, 258, 647, 867
EaeI	YGGCCR	2 cut(s)	303, 552
EciI	GGCGGA	1 cut(s)	137
Eco130I	CCWWGG	2 cut(s)	505, 1044
Eco147I	AGGCCT	1 cut(s)	130
Eco24I	GRGCYC	2 cut(s)	799, 977
Eco47I	GGWCC	1 cut(s)	548
EcoNI	CCTNNNNNAGG	1 cut(s)	956
EcoO109I	RGGNCCY	1 cut(s)	502
EcoRII	CCWGG	1 cut(s)	300
EcoT14I	CCWWGG	2 cut(s)	505, 1044
EcoT38I	GRGCYC	2 cut(s)	799, 977
ErhI	CCWWGG	2 cut(s)	505, 1044
FaeI	CATG	2 cut(s)	349, 541
FaqI	GGGAC	3 cut(s)	32, 94, 326
FatI	CATG	2 cut(s)	345, 537
FauI	CCCGC	3 cut(s)	71, 205, 212
FokI	GGATG	2 cut(s)	535, 1061
FriOI	GRGCYC	2 cut(s)	799, 977
HaeIII	GGCC	6 cut(s)	130, 305, 371, 503, 554, 599
HapII	CCGG	2 cut(s)	546, 551
HgaI	GACGC	1 cut(s)	259
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	2 cut(s)	349, 541
HincII	GTYRAC	2 cut(s)	291, 637
HindII	GTYRAC	2 cut(s)	291, 637
HindIII	AAGCTT	1 cut(s)	847
HinfI	GANTC	2 cut(s)	510, 568
HpaII	CCGG	2 cut(s)	546, 551
HphI	GGTGA	2 cut(s)	56, 409
Hpy166II	GTNNAC	2 cut(s)	291, 637
Hpy188I	TCNGA	7 cut(s)	105, 187, 468, 491, 647, 762, 1057
Hpy188III	TCNNGA	3 cut(s)	572, 651, 919
Hpy8I	GTNNAC	2 cut(s)	291, 637
Hpy99I	CGWCG	2 cut(s)	275, 311
HpyAV	CCTTC	7 cut(s)	63, 97, 102, 147, 370, 947, 988
HpyCH4III	ACNGT	3 cut(s)	171, 426, 431
HpyCH4IV	ACGT	2 cut(s)	20, 927
HpyCH4V	TGCA	4 cut(s)	533, 731, 779, 965
HpyF10VI	GCNNNNNNNGC	5 cut(s)	491, 500, 533, 811, 884
HpyF3I	CTNAG	2 cut(s)	458, 496
HpySE526I	ACGT	2 cut(s)	20, 927
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	2 cut(s)	349, 541
KpnI	GGTACC	1 cut(s)	430
KspI	CCGCGG	1 cut(s)	879
Kzo9I	GATC	4 cut(s)	187, 258, 647, 867
LmnI	GCTCC	5 cut(s)	222, 287, 491, 770, 802
Lsp1109I	GCAGC	8 cut(s)	514, 517, 545, 580, 760, 763, 798, 811
LweI	GCATC	2 cut(s)	580, 788
MaeII	ACGT	2 cut(s)	20, 927
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	4 cut(s)	189, 260, 649, 869
MboI	GATC	4 cut(s)	187, 258, 647, 867
MboII	GAAGA	2 cut(s)	361, 973
MflI	RGATCY	2 cut(s)	647, 867
MhlI	GDGCHC	2 cut(s)	799, 977
MluCI	AATT	3 cut(s)	374, 575, 1059
MlyI	GAGTC	2 cut(s)	519, 577
MmeI	TCCRAC	1 cut(s)	128
MseI	TTAA	1 cut(s)	605
MslI	CAYNNNNRTG	1 cut(s)	899
MspA1I	CMGCKG	2 cut(s)	811, 878
MspI	CCGG	2 cut(s)	546, 551
MspR9I	CCNGG	2 cut(s)	302, 546
MvaI	CCWGG	1 cut(s)	302
MvnI	CGCG	4 cut(s)	257, 318, 475, 878
MwoI	GCNNNNNNNGC	5 cut(s)	491, 500, 533, 811, 884
NciI	CCSGG	1 cut(s)	546
NdeII	GATC	4 cut(s)	187, 258, 647, 867
NlaIII	CATG	2 cut(s)	349, 541
NlaIV	GGNNCC	3 cut(s)	428, 493, 798
NmuCI	GTSAC	1 cut(s)	442
PceI	AGGCCT	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PfoI	TCCNGGA	1 cut(s)	544
Ple19I	CGATCG	1 cut(s)	190
PleI	GAGTC	2 cut(s)	518, 576
PpsI	GAGTC	2 cut(s)	518, 576
Psp6I	CCWGG	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	3 cut(s)	428, 493, 798
PspPI	GGNCC	4 cut(s)	370, 502, 548, 598
PstI	CTGCAG	1 cut(s)	535
PsuI	RGATCY	2 cut(s)	647, 867
PvuI	CGATCG	1 cut(s)	190
RsaI	GTAC	3 cut(s)	419, 428, 1025
RsaNI	GTAC	3 cut(s)	418, 427, 1024
RseI	CAYNNNNRTG	1 cut(s)	899
Rsr2I	CGGWCCG	1 cut(s)	548
RsrII	CGGWCCG	1 cut(s)	548
SacII	CCGCGG	1 cut(s)	879
SaqAI	TTAA	1 cut(s)	605
Sau3AI	GATC	4 cut(s)	187, 258, 647, 867
Sau96I	GGNCC	4 cut(s)	370, 502, 548, 598
SchI	GAGTC	2 cut(s)	519, 577
ScrFI	CCNGG	2 cut(s)	302, 546
SduI	GDGCHC	2 cut(s)	799, 977
SfaNI	GCATC	2 cut(s)	580, 788
SfcI	CTRYAG	1 cut(s)	531
Sfr303I	CCGCGG	1 cut(s)	879
SgrBI	CCGCGG	1 cut(s)	879
SinI	GGWCC	1 cut(s)	548
SmiMI	CAYNNNNRTG	1 cut(s)	899
Sse9I	AATT	3 cut(s)	374, 575, 1059
SseBI	AGGCCT	1 cut(s)	130
SspI	AATATT	1 cut(s)	414
StuI	AGGCCT	1 cut(s)	130
StyD4I	CCNGG	2 cut(s)	300, 544
StyI	CCWWGG	2 cut(s)	505, 1044
TaaI	ACNGT	3 cut(s)	171, 426, 431
TaiI	ACGT	2 cut(s)	23, 930
TaqI	TCGA	1 cut(s)	920
TasI	AATT	3 cut(s)	374, 575, 1059
TatI	WGTACW	2 cut(s)	417, 1023
TauI	GCSGC	2 cut(s)	203, 599
Tru1I	TTAA	1 cut(s)	605
Tru9I	TTAA	1 cut(s)	605
TscAI	CASTG	1 cut(s)	915
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	8 cut(s)	527, 530, 533, 593, 773, 776, 811, 824
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	2 cut(s)	362, 367
TspGWI	ACGGA	2 cut(s)	34, 274
TspRI	CASTG	1 cut(s)	915
VpaK11BI	GGWCC	1 cut(s)	548
XagI	CCTNNNNNAGG	1 cut(s)	956
XapI	RAATTY	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.