Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003123

Physical Location & Seq

Genomic Coordinates Forward (+)

59650172 .. 59652607

Gene Structure 2436 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21057

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGATATTGTAAGTTTACTGGCGCACTTCATAAGCAAAATAATTGATCTTGATCTTTTGGTTTTGAATAGGAATTTATCTTTGTTGATGCTGCTGTCCACCTTAAGGTACGGCCTTGTCTATTGTGGAAAATCACTTGACATATTGGTTGTCAACTCTTTTGGATCTGCATATCAGGCTCTTTTTGTACTTCTATTTCTACCTTTCTTATCCAATATGAGAGGCATACCATTTGCCCAACTTCCTACATATCTAAAAGACGGTGCTGGTTGCTTTCTGAATATTGGAGCTGGTGCATCAGGCAAGCTGTTGTATCTGTTTTCATTTTCTTTCTGTTGCAATGGAGCTCCATTGCTCCCCCTGCTTTATGTAGCTGCCAATCTGTTGTTCAATATATCCTTGATGAATGTAGTAAAGATTTCTTCGGCAGTCGTTTCTTCTCTCGTTGTGATGTTGTCAGTGCCAATCTCGATTTATGTTCTTTCCCTTCCATTGCCATATCTCCAAGAGGGTGCAACTTTGAGCCCTTTTTTCCTCTTTGGTAGTGCAATTCTTGTCTTGGGTCTTATTCTGTACAGCATACCCCAGCCTGCCAAGGATGTTGCTAAAATTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006857 GO:0006950 GO:0006952 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0010035 GO:0010038 GO:0015711 GO:0015833 GO:0034635 GO:0042221 GO:0042886 GO:0042939 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0051704 GO:0051707 GO:0071702 GO:0071705 GO:0072337 GO:0072348 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRT-like

Protein Analysis

205

Amino Acids

22.16

Weight (kDa)

8.68

Isoelectric Point (pI)

27.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRT-like	PF08627	38 - 192	4.3e-10	CRT-like, chloroquine-resistance transporter-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24460 AT4G24460 AT4G24460 AT4G24460
fragaria_vesca	FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370
malus_domestica	MD02G1042100.v1.1 MD08G1202100.v1.1 MD08G1202700.v1.1 MD08G1202800.v1.1
prunus_persica	Prupe.1G535300_v2.0.a1 Prupe.1G535300_v2.0.a1
pyrus_communis	pycom08g17510
rosa_chinensis	RchiOBHm_Chr7g0234941 RchiOBHm_Chr7g0234951 RchiOBHm_Chr7g0234961
rosa_laevigata	RLG00000001190 RLG00000001191
rosa_multiflora	Rmu_sc0000039.1_g000013 Rmu_sc0000039.1_g000014 Rmu_sc0000768.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226420 Rroxscaffold_3G00226430
rosa_rugosa	Rorug07G0286700
rosa_samantha	Rh7AG441400 Rh7AG441500 Rh7BG414300 Rh7CG462800 Rh7DG431000
rosa_wichuraiana	Rw7G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	172
AcsI	RAATTY	1 cut(s)	73
AfaI	GTAC	3 cut(s)	110, 189, 575
AfiI	CCNNNNNNNGG	1 cut(s)	105
AflII	CTTAAG	1 cut(s)	103
AgsI	TTSAA	2 cut(s)	67, 391
AjuI	GAANNNNNNNTTGG	2 cut(s)	371, 403
AluBI	AGCT	4 cut(s)	290, 307, 347, 374
AluI	AGCT	4 cut(s)	290, 307, 347, 374
Alw21I	GWGCWC	1 cut(s)	349
AlwI	GGATC	1 cut(s)	172
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	2 cut(s)	91, 374
ApoI	RAATTY	1 cut(s)	73
AseI	ATTAAT	1 cut(s)	612
AspLEI	GCGC	1 cut(s)	25
BanII	GRGCYC	2 cut(s)	349, 527
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	2 cut(s)	78, 361
BceAI	ACGGC	1 cut(s)	127
BfrI	CTTAAG	1 cut(s)	103
BisI	GCNGC	2 cut(s)	92, 375
BlsI	GCNGC	2 cut(s)	93, 376
BmsI	GCATC	2 cut(s)	78, 305
BsaBI	GATNNNNATC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	594
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse1I	ACTGG	1 cut(s)	24
Bse3DI	GCAATG	3 cut(s)	346, 350, 491
Bse8I	GATNNNNATC	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	594
BseGI	GGATG	1 cut(s)	604
BseJI	GATNNNNATC	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMI	GCAATG	3 cut(s)	346, 350, 491
BseNI	ACTGG	1 cut(s)	24
BseXI	GCAGC	2 cut(s)	78, 361
BseYI	CCCAGC	1 cut(s)	585
BshFI	GGCC	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	349
BslI	CCNNNNNNNGG	1 cut(s)	105
BsnI	GGCC	1 cut(s)	114
Bsp1286I	GDGCHC	2 cut(s)	349, 527
Bsp1407I	TGTACA	1 cut(s)	573
Bsp143I	GATC	3 cut(s)	46, 52, 164
BspANI	GGCC	1 cut(s)	114
BspPI	GGATC	1 cut(s)	172
BspTI	CTTAAG	1 cut(s)	103
BsrDI	GCAATG	3 cut(s)	346, 350, 491
BsrGI	TGTACA	1 cut(s)	573
BsrI	ACTGG	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	594
BssMI	GATC	3 cut(s)	46, 52, 164
BssT1I	CCWWGG	1 cut(s)	594
Bst4CI	ACNGT	1 cut(s)	263
BstAFI	CTTAAG	1 cut(s)	103
BstAUI	TGTACA	1 cut(s)	573
BstC8I	GCNNGC	2 cut(s)	305, 591
BstF5I	GGATG	1 cut(s)	604
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	3 cut(s)	49, 55, 167
BstMBI	GATC	3 cut(s)	46, 52, 164
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 361
BstV1I	GCAGC	2 cut(s)	78, 361
BstX2I	RGATCY	1 cut(s)	164
BstYI	RGATCY	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	604
BtsIMutI	CAGTG	1 cut(s)	465
Cac8I	GCNNGC	2 cut(s)	305, 591
CfoI	GCGC	1 cut(s)	25
Csp6I	GTAC	3 cut(s)	109, 188, 574
CviJI	RGCY	8 cut(s)	114, 179, 290, 307, 347, 374, 525, 589
CviKI_1	RGCY	8 cut(s)	114, 179, 290, 307, 347, 374, 525, 589
CviQI	GTAC	3 cut(s)	109, 188, 574
DpnI	GATC	3 cut(s)	48, 54, 166
DpnII	GATC	3 cut(s)	46, 52, 164
Ecl136II	GAGCTC	1 cut(s)	347
Eco130I	CCWWGG	1 cut(s)	594
Eco24I	GRGCYC	2 cut(s)	349, 527
Eco53kI	GAGCTC	1 cut(s)	347
EcoICRI	GAGCTC	1 cut(s)	347
EcoT14I	CCWWGG	1 cut(s)	594
EcoT38I	GRGCYC	2 cut(s)	349, 527
ErhI	CCWWGG	1 cut(s)	594
Fnu4HI	GCNGC	2 cut(s)	92, 375
FokI	GGATG	1 cut(s)	611
FriOI	GRGCYC	2 cut(s)	349, 527
Fsp4HI	GCNGC	2 cut(s)	92, 375
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	2 cut(s)	92, 375
GsaI	CCCAGC	1 cut(s)	589
HaeIII	GGCC	1 cut(s)	114
HhaI	GCGC	1 cut(s)	25
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
Hpy166II	GTNNAC	3 cut(s)	17, 99, 154
Hpy188I	TCNGA	1 cut(s)	279
Hpy188III	TCNNGA	2 cut(s)	50, 469
Hpy8I	GTNNAC	3 cut(s)	17, 99, 154
HpyAV	CCTTC	1 cut(s)	497
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4V	TGCA	5 cut(s)	170, 296, 339, 515, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 361
HspAI	GCGC	1 cut(s)	23
Kzo9I	GATC	3 cut(s)	46, 52, 164
LmnI	GCTCC	4 cut(s)	287, 344, 352, 360
LpnPI	CCDG	8 cut(s)	5, 161, 252, 276, 285, 374, 599, 603
Lsp1109I	GCAGC	2 cut(s)	78, 361
LweI	GCATC	2 cut(s)	78, 305
MalI	GATC	3 cut(s)	48, 54, 166
MboI	GATC	3 cut(s)	46, 52, 164
MboII	GAAGA	2 cut(s)	414, 429
MflI	RGATCY	1 cut(s)	164
MhlI	GDGCHC	2 cut(s)	349, 527
MluCI	AATT	5 cut(s)	42, 73, 549, 609, 613
MnlI	CCTC	3 cut(s)	215, 502, 545
MseI	TTAA	2 cut(s)	104, 612
MspCI	CTTAAG	1 cut(s)	103
MwoI	GCNNNNNNNGC	2 cut(s)	176, 361
NdeII	GATC	3 cut(s)	46, 52, 164
PkrI	GCNGC	2 cut(s)	93, 376
PshBI	ATTAAT	1 cut(s)	612
Psp124BI	GAGCTC	1 cut(s)	349
PspFI	CCCAGC	1 cut(s)	585
PsuI	RGATCY	1 cut(s)	164
RsaI	GTAC	3 cut(s)	110, 189, 575
RsaNI	GTAC	3 cut(s)	109, 188, 574
SacI	GAGCTC	1 cut(s)	349
SaqAI	TTAA	2 cut(s)	104, 612
SatI	GCNGC	2 cut(s)	92, 375
Sau3AI	GATC	3 cut(s)	46, 52, 164
SduI	GDGCHC	2 cut(s)	349, 527
SetI	ASST	7 cut(s)	104, 110, 205, 292, 309, 349, 376
SfaNI	GCATC	2 cut(s)	78, 305
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
Sse9I	AATT	5 cut(s)	42, 73, 549, 609, 613
SspI	AATATT	1 cut(s)	283
SstI	GAGCTC	1 cut(s)	349
StyI	CCWWGG	1 cut(s)	594
TaaI	ACNGT	1 cut(s)	263
TaqI	TCGA	1 cut(s)	470
TasI	AATT	5 cut(s)	42, 73, 549, 609, 613
TatI	WGTACW	2 cut(s)	187, 573
Tru1I	TTAA	2 cut(s)	104, 612
Tru9I	TTAA	2 cut(s)	104, 612
TscAI	CASTG	1 cut(s)	465
TseI	GCWGC	2 cut(s)	91, 374
TspDTI	ATGAA	3 cut(s)	19, 312, 419
TspRI	CASTG	1 cut(s)	465
Vha464I	CTTAAG	1 cut(s)	103
VspI	ATTAAT	1 cut(s)	612
XapI	RAATTY	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.