MD02G1042100.v1.1

pollen tube development

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
3457324 .. 3458221
898 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1042100.v1.1.491

Sequence Viewer

Length: 186 bp
ATGCCTATATTTGGAAATTCCTCTTCTCAGCTTTTACTCTGTATCCACATTGTGCAGACTTTTTTGGTGTGGCAGATGAGTTTTTCTGCCTTTCTCTTGGGGAGAACAAACACACTCAATCAGATTGTTGGCTGCATACTCGTAGCTACAGGTGTAGCAGCGGCTGTTTCAAGGTTAAGCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

62

Amino Acids

6.53

Weight (kDa)

9.01

Isoelectric Point (pI)

42.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 161
AcsI RAATTY 1 cut(s) 16
AdeI CACNNNGTG 1 cut(s) 52
AfiI CCNNNNNNNGG 1 cut(s) 11
AgsI TTSAA 1 cut(s) 171
AluBI AGCT 2 cut(s) 31, 146
AluI AGCT 2 cut(s) 31, 146
AlwNI CAGNNNCTG 1 cut(s) 164
ApeKI GCWGC 2 cut(s) 132, 158
ApoI RAATTY 1 cut(s) 16
BbvI GCAGC 2 cut(s) 119, 170
BciVI GTATCC 1 cut(s) 53
BfmI CTRYAG 1 cut(s) 147
BfuI GTATCC 1 cut(s) 53
BisI GCNGC 3 cut(s) 133, 159, 162
BlsI GCNGC 3 cut(s) 134, 160, 163
Bsc4I CCNNNNNNNGG 1 cut(s) 11
BseLI CCNNNNNNNGG 1 cut(s) 11
BseMII CTCAG 1 cut(s) 41
BseXI GCAGC 2 cut(s) 119, 170
BsgI GTGCAG 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 11
BspACI CCGC 1 cut(s) 161
BspCNI CTCAG 1 cut(s) 40
Bst6I CTCTTC 1 cut(s) 28
BstDEI CTNAG 1 cut(s) 27
BstSFI CTRYAG 1 cut(s) 147
BstV1I GCAGC 2 cut(s) 119, 170
BsuI GTATCC 1 cut(s) 53
CaiI CAGNNNCTG 1 cut(s) 164
CviJI RGCY 4 cut(s) 31, 132, 146, 164
CviKI_1 RGCY 4 cut(s) 31, 132, 146, 164
DdeI CTNAG 1 cut(s) 27
DraIII CACNNNGTG 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 28
EarI CTCTTC 1 cut(s) 28
FaiI YATR 2 cut(s) 8, 137
Fnu4HI GCNGC 3 cut(s) 133, 159, 162
Fsp4HI GCNGC 3 cut(s) 133, 159, 162
GluI GCNGC 3 cut(s) 133, 159, 162
Hpy188I TCNGA 1 cut(s) 123
HpyCH4V TGCA 2 cut(s) 55, 135
HpyF3I CTNAG 1 cut(s) 27
LpnPI CCDG 1 cut(s) 135
Lsp1109I GCAGC 2 cut(s) 119, 170
MboII GAAGA 1 cut(s) 15
MluCI AATT 1 cut(s) 16
MnlI CCTC 1 cut(s) 31
MseI TTAA 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 161
PkrI GCNGC 3 cut(s) 134, 160, 163
PstNI CAGNNNCTG 1 cut(s) 164
SaqAI TTAA 1 cut(s) 176
SatI GCNGC 3 cut(s) 133, 159, 162
SetI ASST 4 cut(s) 33, 148, 154, 176
SfcI CTRYAG 1 cut(s) 147
SgeI CNNG 3 cut(s) 109, 152, 162
Sse9I AATT 1 cut(s) 16
SsiI CCGC 1 cut(s) 161
TasI AATT 1 cut(s) 16
TauI GCSGC 1 cut(s) 164
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TseI GCWGC 2 cut(s) 132, 158
XapI RAATTY 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.