Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0003123

Physical Location & Seq

Genomic Coordinates Reverse (-)

26185914 .. 26186595

Gene Structure 682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1202100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 132 bp

ATGTTGTCAGTGCCAATATCAATTTATGTTCTTTCCCTTCCCTTGCCGTATATGGAAGGAGGTTCAACTTTGAGCCCCTTTTTCCTCTTCGGTAGTGCGGTTCTTGTGTTGGGTGCCAAGGATGTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006857 GO:0006950 GO:0006952 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0010035 GO:0010038 GO:0015711 GO:0015833 GO:0034635 GO:0042221 GO:0042886 GO:0042939 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0051704 GO:0051707 GO:0071702 GO:0071705 GO:0072337 GO:0072348 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRT-like

Protein Analysis

44

Amino Acids

4.54

Weight (kDa)

4.37

Isoelectric Point (pI)

49.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24460 AT4G24460 AT4G24460 AT4G24460
fragaria_vesca	FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370
malus_domestica	MD02G1042100.v1.1 MD08G1202100.v1.1 MD08G1202700.v1.1 MD08G1202800.v1.1
prunus_persica	Prupe.1G535300_v2.0.a1 Prupe.1G535300_v2.0.a1
pyrus_communis	pycom08g17510
rosa_chinensis	RchiOBHm_Chr7g0234941 RchiOBHm_Chr7g0234951 RchiOBHm_Chr7g0234961
rosa_laevigata	RLG00000001190 RLG00000001191
rosa_multiflora	Rmu_sc0000039.1_g000013 Rmu_sc0000039.1_g000014 Rmu_sc0000768.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226420 Rroxscaffold_3G00226430
rosa_rugosa	Rorug07G0286700
rosa_samantha	Rh7AG441400 Rh7AG441500 Rh7BG414300 Rh7CG462800 Rh7DG431000
rosa_wichuraiana	Rw7G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	113
AciI	CCGC	1 cut(s)	98
AgsI	TTSAA	1 cut(s)	66
BanI	GGYRCC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	77
BceAI	ACGGC	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	115
BsaJI	CCNNGG	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	1 cut(s)	127
BshNI	GGYRCC	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	77
BspACI	CCGC	1 cut(s)	98
BspLI	GGNNCC	1 cut(s)	115
BspT107I	GGYRCC	1 cut(s)	113
BssECI	CCNNGG	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	117
Bst6I	CTCTTC	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	127
BtsIMutI	CAGTG	1 cut(s)	15
CviJI	RGCY	1 cut(s)	75
CviKI_1	RGCY	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Eco130I	CCWWGG	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	77
EcoT14I	CCWWGG	1 cut(s)	117
EcoT38I	GRGCYC	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	117
FaiI	YATR	3 cut(s)	27, 51, 53
FriOI	GRGCYC	1 cut(s)	77
HpyAV	CCTTC	2 cut(s)	47, 50
MboII	GAAGA	1 cut(s)	79
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	1 cut(s)	21
MnlI	CCTC	2 cut(s)	53, 95
NlaIV	GGNNCC	1 cut(s)	115
PspN4I	GGNNCC	1 cut(s)	115
SduI	GDGCHC	1 cut(s)	77
SetI	ASST	1 cut(s)	64
SgeI	CNNG	2 cut(s)	55, 116
Sse9I	AATT	1 cut(s)	21
SsiI	CCGC	1 cut(s)	98
StyI	CCWWGG	1 cut(s)	117
TasI	AATT	1 cut(s)	21
TscAI	CASTG	1 cut(s)	15
TspRI	CASTG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.