Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003123

Physical Location & Seq

Genomic Coordinates Reverse (-)

9944535 .. 9949840

Gene Structure 5306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00226430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGCCACTCCTCCATAGGCCTCGCCCTTCTCTCCTCCGCCTCCACACTCCAAACGCACCGTTTCGCCTCCCCTCCGATCGCAAACCCACCGCCCGCAATGTCAAGCTCCACGCTTCACTCCCAAACCCTCCCCCTCCTCCTCCTCCTCCTCCTCCGCGATCTCAAACGGCGTCGTTTTCAGCTCCTTATGTGGTGATATATTTCTCAATATTGTATATACGGTACCGTTCTGGGATTGTGACTGACGAAATGCTAAGGCTTCCGAAATCGCGGTTCGTGGCCATTGGGGCCTTAGAGGCCCTTGGAGTCGCTTCTGGGATGGCTGCTGCAGCCATGCTTCCTGGACCGGCCATACCCATATTGAGTCAGACGTTTTTGGTGTGGCAGCTGGGTTTTTCTTCTCTTGTGTTGGGAAGAACATACAGAATCAATCAGATTGTTGGATGTGTTCTTGTAGCTGCAGGTGTAGCGCTAGCTGTTGCTAGTTTATATCTCTATGCAGCATGCCTATTCTACACTTTCCTCAAGAATTTGCTTAGATCTAGGGCAGTTCTATTCCCACTCCCAGTTTGTCATCCTGCACTTCTTTTTGGGAAAGATTCTGGCCAGATGCTATCTGGAGTTAAGTCTGTGTGGCCATTACTAATGATTTCTTCAAGTGCTTTTCAAGCTGGTGCATCTATAATCAAGGAATTCGTCTTTGTTGATGCTGCGGTCCACTTAAAGGGAAAATCACTTGACATATTTGTTGTCAACTCTTTTGGATCGGGATTTCAGGCTCTTTTTGTACTTCTATTTCTACCTTTCTTATCAAATATGAGAGGCATACCATTCACCCAACTTCCTACATATCTAAAAGATGGTGCTGGTTGCTTTCTCAATATGGGAGCTGCTGCATCAGGCAAGCTGTGTTATCTATCTTCAATTACTTTCTGTTGTAATGGGGCTCCATTGCTTCCGCTGCTTTACATAGCTGCCAATCTTTTGTTCAACATAAGCTTGCTGAATGTAGTAAAGATATCCTCCGCGGTTGTTGCTTCTCTCATTGTGATGTTTGCCAATCTCGATTTATGTCCTTTCCTTCCATTGCCATATCTCCAAGAGGGTGCAACTTTGAGCCCCTTCTTCCTCTTTGGTAGTGCGGTTCTTGTCTTGGGTCTTATTTTGTACAGCATACCCCAACCTGCCAAGGATGTTTCTGAAATTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006857 GO:0006950 GO:0006952 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0010035 GO:0010038 GO:0015711 GO:0015833 GO:0034635 GO:0042221 GO:0042886 GO:0042939 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0051704 GO:0051707 GO:0071702 GO:0071705 GO:0072337 GO:0072348 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRT-like

Protein Analysis

403

Amino Acids

43.37

Weight (kDa)

9.67

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRT-like	PF08627	62 - 162	8.4e-10	CRT-like, chloroquine-resistance transporter-like
CRT-like	PF08627	195 - 355	5.4e-11	CRT-like, chloroquine-resistance transporter-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24460 AT4G24460 AT4G24460 AT4G24460
fragaria_vesca	FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370
malus_domestica	MD02G1042100.v1.1 MD08G1202100.v1.1 MD08G1202700.v1.1 MD08G1202800.v1.1
prunus_persica	Prupe.1G535300_v2.0.a1 Prupe.1G535300_v2.0.a1
pyrus_communis	pycom08g17510
rosa_chinensis	RchiOBHm_Chr7g0234941 RchiOBHm_Chr7g0234951 RchiOBHm_Chr7g0234961
rosa_laevigata	RLG00000001190 RLG00000001191
rosa_multiflora	Rmu_sc0000039.1_g000013 Rmu_sc0000039.1_g000014 Rmu_sc0000768.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226420 Rroxscaffold_3G00226430
rosa_rugosa	Rorug07G0286700
rosa_samantha	Rh7AG441400 Rh7AG441500 Rh7BG414300 Rh7CG462800 Rh7DG431000
rosa_wichuraiana	Rw7G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	452
Acc36I	ACCTGC	2 cut(s)	452, 1192
Acc65I	GGTACC	1 cut(s)	222
AccB1I	GGYRCC	1 cut(s)	222
AccII	CGCG	3 cut(s)	157, 271, 1028
AclWI	GGATC	1 cut(s)	772
AcoI	YGGCCR	4 cut(s)	279, 348, 604, 635
AcsI	RAATTY	2 cut(s)	529, 692
AcyI	GRCGYC	1 cut(s)	170
AfaI	GTAC	3 cut(s)	224, 789, 1169
AfeI	AGCGCT	1 cut(s)	471
AfiI	CCNNNNNNNGG	1 cut(s)	724
AgsI	TTSAA	4 cut(s)	657, 668, 924, 991
AjnI	CCWGG	1 cut(s)	340
AjuI	GAANNNNNNNTTGG	2 cut(s)	971, 1003
AlwI	GGATC	1 cut(s)	772
Aor51HI	AGCGCT	1 cut(s)	471
AoxI	GGCC	7 cut(s)	17, 279, 288, 297, 348, 604, 635
ApoI	RAATTY	2 cut(s)	529, 692
Asp718I	GGTACC	1 cut(s)	222
AspLEI	GCGC	1 cut(s)	472
AspS9I	GGNCC	4 cut(s)	288, 298, 344, 715
AsuHPI	GGTGA	2 cut(s)	205, 826
AsuNHI	GCTAGC	1 cut(s)	472
AvaII	GGWCC	2 cut(s)	344, 715
BalI	TGGCCA	3 cut(s)	281, 606, 637
BanI	GGYRCC	1 cut(s)	222
BanII	GRGCYC	2 cut(s)	949, 1121
BccI	CCATC	2 cut(s)	313, 854
BceAI	ACGGC	1 cut(s)	183
BciT130I	CCWGG	1 cut(s)	342
BfaI	CTAG	3 cut(s)	473, 483, 543
BfmI	CTRYAG	2 cut(s)	327, 459
BfoI	RGCGCY	1 cut(s)	473
BfuAI	ACCTGC	2 cut(s)	452, 1192
BglI	GCCNNNNNGGC	2 cut(s)	287, 296
BglII	AGATCT	1 cut(s)	539
Bme1390I	CCNGG	1 cut(s)	342
Bme18I	GGWCC	2 cut(s)	344, 715
BmgT120I	GGNCC	4 cut(s)	288, 298, 344, 715
BmiI	GGNNCC	3 cut(s)	224, 289, 948
BmrFI	CCNGG	1 cut(s)	342
BmrI	ACTGGG	1 cut(s)	560
BmsI	GCATC	4 cut(s)	600, 686, 697, 905
BmtI	GCTAGC	1 cut(s)	476
BmuI	ACTGGG	1 cut(s)	560
BpmI	CTGGAG	1 cut(s)	639
Bpu10I	CCTNAGC	1 cut(s)	254
BpuEI	CTTGAG	1 cut(s)	509
BsaHI	GRCGYC	1 cut(s)	170
BsaJI	CCNNGG	3 cut(s)	301, 1026, 1188
Bsc4I	CCNNNNNNNGG	1 cut(s)	724
Bse118I	RCCGGY	1 cut(s)	346
Bse1I	ACTGG	1 cut(s)	566
Bse3DI	GCAATG	3 cut(s)	103, 950, 1085
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	3 cut(s)	301, 1026, 1188
BseGI	GGATG	4 cut(s)	324, 449, 574, 1198
BseLI	CCNNNNNNNGG	1 cut(s)	724
BseMI	GCAATG	3 cut(s)	103, 950, 1085
BseNI	ACTGG	1 cut(s)	566
BseRI	GAGGAG	7 cut(s)	23, 126, 129, 132, 135, 138, 141
BseYI	CCCAGC	1 cut(s)	388
BsgI	GTGCAG	1 cut(s)	564
Bsh1236I	CGCG	3 cut(s)	157, 271, 1028
Bsh1285I	CGRYCG	1 cut(s)	79
BshFI	GGCC	7 cut(s)	19, 281, 290, 299, 350, 606, 637
BshNI	GGYRCC	1 cut(s)	222
BsiEI	CGRYCG	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	347
BslI	CCNNNNNNNGG	1 cut(s)	724
BsnI	GGCC	7 cut(s)	19, 281, 290, 299, 350, 606, 637
Bsp1286I	GDGCHC	2 cut(s)	949, 1121
Bsp1407I	TGTACA	1 cut(s)	1167
Bsp143I	GATC	4 cut(s)	76, 158, 539, 764
BspANI	GGCC	7 cut(s)	19, 281, 290, 299, 350, 606, 637
BspFNI	CGCG	3 cut(s)	157, 271, 1028
BspLI	GGNNCC	3 cut(s)	224, 289, 948
BspMAI	CTGCAG	2 cut(s)	331, 463
BspMI	ACCTGC	2 cut(s)	452, 1192
BspOI	GCTAGC	1 cut(s)	476
BspPI	GGATC	1 cut(s)	772
BspT107I	GGYRCC	1 cut(s)	222
BsrDI	GCAATG	3 cut(s)	103, 950, 1085
BsrFI	RCCGGY	1 cut(s)	346
BsrGI	TGTACA	1 cut(s)	1167
BsrI	ACTGG	1 cut(s)	566
BssAI	RCCGGY	1 cut(s)	346
BssECI	CCNNGG	3 cut(s)	301, 1026, 1188
BssMI	GATC	4 cut(s)	76, 158, 539, 764
BssNI	GRCGYC	1 cut(s)	170
BssT1I	CCWWGG	2 cut(s)	301, 1188
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	3 cut(s)	60, 222, 227
BstACI	GRCGYC	1 cut(s)	170
BstAUI	TGTACA	1 cut(s)	1167
BstC8I	GCNNGC	5 cut(s)	94, 474, 505, 905, 1001
BstDEI	CTNAG	3 cut(s)	254, 292, 536
BstDSI	CCRYGG	1 cut(s)	1026
BstF5I	GGATG	4 cut(s)	324, 449, 574, 1198
BstFNI	CGCG	3 cut(s)	157, 271, 1028
BstH2I	RGCGCY	1 cut(s)	473
BstHHI	GCGC	1 cut(s)	472
BstKTI	GATC	4 cut(s)	79, 161, 542, 767
BstMBI	GATC	4 cut(s)	76, 158, 539, 764
BstMCI	CGRYCG	1 cut(s)	79
BstMWI	GCNNNNNNNGC	7 cut(s)	287, 296, 329, 467, 668, 961, 1034
BstNI	CCWGG	1 cut(s)	342
BstNSI	RCATGY	1 cut(s)	507
BstSCI	CCNGG	1 cut(s)	340
BstSFI	CTRYAG	2 cut(s)	327, 459
BstUI	CGCG	3 cut(s)	157, 271, 1028
BstX2I	RGATCY	1 cut(s)	539
BstYI	RGATCY	1 cut(s)	539
BsuRI	GGCC	7 cut(s)	19, 281, 290, 299, 350, 606, 637
BtgI	CCRYGG	1 cut(s)	1026
BtsCI	GGATG	4 cut(s)	324, 449, 574, 1198
BveI	ACCTGC	2 cut(s)	452, 1192
Cac8I	GCNNGC	5 cut(s)	94, 474, 505, 905, 1001
CfoI	GCGC	1 cut(s)	472
Cfr10I	RCCGGY	1 cut(s)	346
Cfr13I	GGNCC	4 cut(s)	288, 298, 344, 715
Cfr42I	CCGCGG	1 cut(s)	1029
CseI	GACGC	1 cut(s)	159
Csp6I	GTAC	3 cut(s)	223, 788, 1168
CviAII	CATG	2 cut(s)	334, 504
CviQI	GTAC	3 cut(s)	223, 788, 1168
DdeI	CTNAG	3 cut(s)	254, 292, 536
DpnI	GATC	4 cut(s)	78, 160, 541, 766
DpnII	GATC	4 cut(s)	76, 158, 539, 764
EaeI	YGGCCR	4 cut(s)	279, 348, 604, 635
EciI	GGCGGA	1 cut(s)	26
Eco130I	CCWWGG	2 cut(s)	301, 1188
Eco147I	AGGCCT	1 cut(s)	19
Eco24I	GRGCYC	2 cut(s)	949, 1121
Eco32I	GATATC	1 cut(s)	1020
Eco47I	GGWCC	2 cut(s)	344, 715
Eco47III	AGCGCT	1 cut(s)	471
EcoO109I	RGGNCCY	2 cut(s)	288, 298
EcoRI	GAATTC	1 cut(s)	692
EcoRII	CCWGG	1 cut(s)	340
EcoRV	GATATC	1 cut(s)	1020
EcoT14I	CCWWGG	2 cut(s)	301, 1188
EcoT38I	GRGCYC	2 cut(s)	949, 1121
ErhI	CCWWGG	2 cut(s)	301, 1188
FaeI	CATG	2 cut(s)	337, 507
FatI	CATG	2 cut(s)	333, 503
FauI	CCCGC	1 cut(s)	101
FokI	GGATG	4 cut(s)	331, 456, 561, 1205
FriOI	GRGCYC	2 cut(s)	949, 1121
FspBI	CTAG	3 cut(s)	473, 483, 543
GlaI	GCGC	1 cut(s)	471
GsaI	CCCAGC	1 cut(s)	392
GsuI	CTGGAG	1 cut(s)	639
HaeII	RGCGCY	1 cut(s)	473
HaeIII	GGCC	7 cut(s)	19, 281, 290, 299, 350, 606, 637
HapII	CCGG	1 cut(s)	347
HgaI	GACGC	1 cut(s)	159
HhaI	GCGC	1 cut(s)	472
Hin1I	GRCGYC	1 cut(s)	170
Hin1II	CATG	2 cut(s)	337, 507
Hin6I	GCGC	1 cut(s)	470
HinP1I	GCGC	1 cut(s)	470
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HindIII	AAGCTT	1 cut(s)	997
HinfI	GANTC	4 cut(s)	306, 364, 426, 599
HpaII	CCGG	1 cut(s)	347
HphI	GGTGA	2 cut(s)	205, 826
Hpy166II	GTNNAC	2 cut(s)	718, 754
Hpy188I	TCNGA	5 cut(s)	76, 264, 369, 435, 1201
Hpy188III	TCNNGA	4 cut(s)	526, 618, 768, 1064
Hpy8I	GTNNAC	2 cut(s)	718, 754
Hpy99I	CGWCG	1 cut(s)	175
HpyAV	CCTTC	3 cut(s)	36, 1091, 1132
HpyCH4III	ACNGT	3 cut(s)	60, 222, 227
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	7 cut(s)	329, 461, 500, 581, 677, 896, 1109
HpyF10VI	GCNNNNNNNGC	7 cut(s)	287, 296, 329, 467, 668, 961, 1034
HpyF3I	CTNAG	3 cut(s)	254, 292, 536
HpySE526I	ACGT	1 cut(s)	371
Hsp92I	GRCGYC	1 cut(s)	170
Hsp92II	CATG	2 cut(s)	337, 507
HspAI	GCGC	1 cut(s)	470
KpnI	GGTACC	1 cut(s)	226
KspI	CCGCGG	1 cut(s)	1029
Kzo9I	GATC	4 cut(s)	76, 158, 539, 764
LmnI	GCTCC	4 cut(s)	111, 187, 887, 952
LweI	GCATC	4 cut(s)	600, 686, 697, 905
MaeI	CTAG	3 cut(s)	473, 483, 543
MaeII	ACGT	1 cut(s)	371
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	4 cut(s)	78, 160, 541, 766
MboI	GATC	4 cut(s)	76, 158, 539, 764
MboII	GAAGA	5 cut(s)	390, 426, 645, 912, 1117
MflI	RGATCY	1 cut(s)	539
MhlI	GDGCHC	2 cut(s)	949, 1121
MlsI	TGGCCA	3 cut(s)	281, 606, 637
MluCI	AATT	4 cut(s)	529, 692, 924, 1203
MluNI	TGGCCA	3 cut(s)	281, 606, 637
MlyI	GAGTC	2 cut(s)	315, 373
MmeI	TCCRAC	1 cut(s)	421
Mox20I	TGGCCA	3 cut(s)	281, 606, 637
MscI	TGGCCA	3 cut(s)	281, 606, 637
MseI	TTAA	2 cut(s)	624, 722
MslI	CAYNNNNRTG	1 cut(s)	1049
Msp20I	TGGCCA	3 cut(s)	281, 606, 637
MspA1I	CMGCKG	3 cut(s)	388, 961, 1028
MspI	CCGG	1 cut(s)	347
MspR9I	CCNGG	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	342
MvnI	CGCG	3 cut(s)	157, 271, 1028
MwoI	GCNNNNNNNGC	7 cut(s)	287, 296, 329, 467, 668, 961, 1034
NdeII	GATC	4 cut(s)	76, 158, 539, 764
NheI	GCTAGC	1 cut(s)	472
NlaIII	CATG	2 cut(s)	337, 507
NlaIV	GGNNCC	3 cut(s)	224, 289, 948
NmuCI	GTSAC	1 cut(s)	238
NspI	RCATGY	1 cut(s)	507
PaeI	GCATGC	1 cut(s)	507
PaqCI	CACCTGC	1 cut(s)	452
PceI	AGGCCT	1 cut(s)	19
PfeI	GAWTC	2 cut(s)	426, 599
PfoI	TCCNGGA	1 cut(s)	340
Ple19I	CGATCG	1 cut(s)	79
PleI	GAGTC	2 cut(s)	314, 372
PpsI	GAGTC	2 cut(s)	314, 372
Psp6I	CCWGG	1 cut(s)	340
PspFI	CCCAGC	1 cut(s)	388
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	3 cut(s)	224, 289, 948
PspPI	GGNCC	4 cut(s)	288, 298, 344, 715
PstI	CTGCAG	2 cut(s)	331, 463
PsuI	RGATCY	1 cut(s)	539
PvuI	CGATCG	1 cut(s)	79
PvuII	CAGCTG	1 cut(s)	388
RsaI	GTAC	3 cut(s)	224, 789, 1169
RsaNI	GTAC	3 cut(s)	223, 788, 1168
RseI	CAYNNNNRTG	1 cut(s)	1049
SacII	CCGCGG	1 cut(s)	1029
SaqAI	TTAA	2 cut(s)	624, 722
Sau3AI	GATC	4 cut(s)	76, 158, 539, 764
Sau96I	GGNCC	4 cut(s)	288, 298, 344, 715
SchI	GAGTC	2 cut(s)	315, 373
ScrFI	CCNGG	1 cut(s)	342
SduI	GDGCHC	2 cut(s)	949, 1121
SfaNI	GCATC	4 cut(s)	600, 686, 697, 905
SfcI	CTRYAG	2 cut(s)	327, 459
SfiI	GGCCNNNNNGGCC	2 cut(s)	287, 296
Sfr303I	CCGCGG	1 cut(s)	1029
SgrBI	CCGCGG	1 cut(s)	1029
SinI	GGWCC	2 cut(s)	344, 715
SmiMI	CAYNNNNRTG	1 cut(s)	1049
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
SphI	GCATGC	1 cut(s)	507
Sse9I	AATT	4 cut(s)	529, 692, 924, 1203
SseBI	AGGCCT	1 cut(s)	19
SspI	AATATT	1 cut(s)	210
SspMI	CTAG	3 cut(s)	473, 483, 543
StuI	AGGCCT	1 cut(s)	19
StyD4I	CCNGG	1 cut(s)	340
StyI	CCWWGG	2 cut(s)	301, 1188
TaaI	ACNGT	3 cut(s)	60, 222, 227
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	1 cut(s)	1065
TasI	AATT	4 cut(s)	529, 692, 924, 1203
TatI	WGTACW	2 cut(s)	787, 1167
TfiI	GAWTC	2 cut(s)	426, 599
Tru1I	TTAA	2 cut(s)	624, 722
Tru9I	TTAA	2 cut(s)	624, 722
TseFI	GTSAC	1 cut(s)	238
Tsp45I	GTSAC	1 cut(s)	238
VpaK11BI	GGWCC	2 cut(s)	344, 715
XapI	RAATTY	2 cut(s)	529, 692
XceI	RCATGY	1 cut(s)	507
XcmI	CCANNNNNNNNNTGG	1 cut(s)	614
XspI	CTAG	3 cut(s)	473, 483, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.