Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003123

Physical Location & Seq

Genomic Coordinates Reverse (-)

11687412 .. 11691264

Gene Structure 3853 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001191

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGTCGTTTCACAAGTTCCTCTCCGTCCCCCCTTCTCTCTCTCACCTCAAAAATGGCGGGACTTCCTCCTCCTCCTCTCCGACGTCAATGCCACTCCTCCATAGGCCTCGCCCTTCTCTCCTCCGCCTCCACACTCCAAACGCACCGTTTCGCCTCCTCTCCGATCGCAAACCCACCGCCCGCAATGTCAAACTCCACGCTTCACTCCCAAACCCTCCCTCCTCCGCCTCCGCCTCCGCGATCTCAAGCGGCGTCGTTTTCAGCTCCGTGTTGACCATAGCCCTAGCCGTCGCCAACCGCGTTCTCTACAAGCTCGCACTCGTCCCCATGAAGAACCACCCCTTCTTTCTCGCCCAATTCATAACCTTTGGGCTCTTTTTGTACTTCTATTTCTACCTTTCTTATCAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006857 GO:0006950 GO:0006952 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0010035 GO:0010038 GO:0015711 GO:0015833 GO:0034635 GO:0042221 GO:0042886 GO:0042939 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0051704 GO:0051707 GO:0071702 GO:0071705 GO:0072337 GO:0072348 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRT-like

Protein Analysis

138

Amino Acids

15.1

Weight (kDa)

11.11

Isoelectric Point (pI)

50.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRT-like	PF08627	85 - 137	6e-06	CRT-like, chloroquine-resistance transporter-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24460 AT4G24460 AT4G24460 AT4G24460
fragaria_vesca	FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370
malus_domestica	MD02G1042100.v1.1 MD08G1202100.v1.1 MD08G1202700.v1.1 MD08G1202800.v1.1
prunus_persica	Prupe.1G535300_v2.0.a1 Prupe.1G535300_v2.0.a1
pyrus_communis	pycom08g17510
rosa_chinensis	RchiOBHm_Chr7g0234941 RchiOBHm_Chr7g0234951 RchiOBHm_Chr7g0234961
rosa_laevigata	RLG00000001190 RLG00000001191
rosa_multiflora	Rmu_sc0000039.1_g000013 Rmu_sc0000039.1_g000014 Rmu_sc0000768.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226420 Rroxscaffold_3G00226430
rosa_rugosa	Rorug07G0286700
rosa_samantha	Rh7AG441400 Rh7AG441500 Rh7BG414300 Rh7CG462800 Rh7DG431000
rosa_wichuraiana	Rw7G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	86
AccII	CGCG	2 cut(s)	239, 300
AciI	CCGC	9 cut(s)	57, 124, 177, 181, 225, 231, 237, 249, 298
AcyI	GRCGYC	2 cut(s)	83, 252
AfaI	GTAC	1 cut(s)	383
AluBI	AGCT	2 cut(s)	264, 313
AluI	AGCT	2 cut(s)	264, 313
AoxI	GGCC	1 cut(s)	104
AsuHPI	GGTGA	1 cut(s)	35
BanII	GRGCYC	1 cut(s)	375
BceAI	ACGGC	1 cut(s)	272
BcgI	CGANNNNNNTGC	2 cut(s)	70, 104
BfaI	CTAG	1 cut(s)	284
BisI	GCNGC	1 cut(s)	250
BlsI	GCNGC	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	229
BsaHI	GRCGYC	2 cut(s)	83, 252
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bse3DI	GCAATG	1 cut(s)	190
BseMI	GCAATG	1 cut(s)	190
BseRI	GAGGAG	7 cut(s)	58, 61, 64, 86, 110, 146, 211
Bsh1236I	CGCG	2 cut(s)	239, 300
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	1 cut(s)	106
BsiEI	CGRYCG	1 cut(s)	166
BslFI	GGGAC	3 cut(s)	11, 73, 308
BsmFI	GGGAC	3 cut(s)	11, 73, 308
BsnI	GGCC	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	2 cut(s)	163, 240
BspACI	CCGC	9 cut(s)	57, 124, 177, 181, 225, 231, 237, 249, 298
BspANI	GGCC	1 cut(s)	106
BspFNI	CGCG	2 cut(s)	239, 300
BsrDI	GCAATG	1 cut(s)	190
BssMI	GATC	2 cut(s)	163, 240
BssNI	GRCGYC	2 cut(s)	83, 252
Bst4CI	ACNGT	1 cut(s)	147
BstACI	GRCGYC	2 cut(s)	83, 252
BstC8I	GCNNGC	2 cut(s)	181, 315
BstFNI	CGCG	2 cut(s)	239, 300
BstKTI	GATC	2 cut(s)	166, 243
BstMBI	GATC	2 cut(s)	163, 240
BstMCI	CGRYCG	1 cut(s)	166
BstUI	CGCG	2 cut(s)	239, 300
BsuRI	GGCC	1 cut(s)	106
Cac8I	GCNNGC	2 cut(s)	181, 315
CseI	GACGC	1 cut(s)	241
Csp6I	GTAC	1 cut(s)	382
CviAII	CATG	1 cut(s)	328
CviJI	RGCY	6 cut(s)	106, 264, 281, 287, 313, 373
CviKI_1	RGCY	6 cut(s)	106, 264, 281, 287, 313, 373
CviQI	GTAC	1 cut(s)	382
DpnI	GATC	2 cut(s)	165, 242
DpnII	GATC	2 cut(s)	163, 240
EciI	GGCGGA	3 cut(s)	113, 214, 220
Eco147I	AGGCCT	1 cut(s)	106
Eco24I	GRGCYC	1 cut(s)	375
EcoT38I	GRGCYC	1 cut(s)	375
FaeI	CATG	1 cut(s)	331
FaiI	YATR	5 cut(s)	102, 278, 329, 362, 412
FaqI	GGGAC	3 cut(s)	11, 73, 308
FatI	CATG	1 cut(s)	327
FauI	CCCGC	2 cut(s)	50, 188
Fnu4HI	GCNGC	1 cut(s)	250
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	1 cut(s)	250
FspBI	CTAG	1 cut(s)	284
GluI	GCNGC	1 cut(s)	250
HaeIII	GGCC	1 cut(s)	106
HgaI	GACGC	1 cut(s)	241
Hin1I	GRCGYC	2 cut(s)	83, 252
Hin1II	CATG	1 cut(s)	331
HincII	GTYRAC	1 cut(s)	273
HindII	GTYRAC	1 cut(s)	273
HphI	GGTGA	1 cut(s)	35
Hpy166II	GTNNAC	1 cut(s)	273
Hpy188I	TCNGA	2 cut(s)	81, 163
Hpy8I	GTNNAC	1 cut(s)	273
Hpy99I	CGWCG	3 cut(s)	85, 257, 293
HpyAV	CCTTC	3 cut(s)	42, 123, 352
HpyCH4III	ACNGT	1 cut(s)	147
HpyCH4IV	ACGT	1 cut(s)	83
HpySE526I	ACGT	1 cut(s)	83
Hsp92I	GRCGYC	2 cut(s)	83, 252
Hsp92II	CATG	1 cut(s)	331
Kzo9I	GATC	2 cut(s)	163, 240
LmnI	GCTCC	1 cut(s)	269
MaeI	CTAG	1 cut(s)	284
MaeII	ACGT	1 cut(s)	83
MalI	GATC	2 cut(s)	165, 242
MboI	GATC	2 cut(s)	163, 240
MboII	GAAGA	1 cut(s)	343
MhlI	GDGCHC	1 cut(s)	375
MluCI	AATT	1 cut(s)	356
MmeI	TCCRAC	1 cut(s)	104
MvnI	CGCG	2 cut(s)	239, 300
NdeII	GATC	2 cut(s)	163, 240
NlaIII	CATG	1 cut(s)	331
PceI	AGGCCT	1 cut(s)	106
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PkrI	GCNGC	1 cut(s)	251
Ple19I	CGATCG	1 cut(s)	166
PvuI	CGATCG	1 cut(s)	166
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
SatI	GCNGC	1 cut(s)	250
Sau3AI	GATC	2 cut(s)	163, 240
SduI	GDGCHC	1 cut(s)	375
SetI	ASST	6 cut(s)	48, 86, 266, 315, 368, 399
SmlI	CTYRAG	1 cut(s)	244
SmoI	CTYRAG	1 cut(s)	244
Sse9I	AATT	1 cut(s)	356
SseBI	AGGCCT	1 cut(s)	106
SsiI	CCGC	9 cut(s)	57, 124, 177, 181, 225, 231, 237, 249, 298
SspMI	CTAG	1 cut(s)	284
StuI	AGGCCT	1 cut(s)	106
TaaI	ACNGT	1 cut(s)	147
TaiI	ACGT	1 cut(s)	86
TasI	AATT	1 cut(s)	356
TatI	WGTACW	1 cut(s)	381
TauI	GCSGC	1 cut(s)	252
TspDTI	ATGAA	2 cut(s)	344, 349
TspGWI	ACGGA	2 cut(s)	13, 256
XspI	CTAG	1 cut(s)	284
ZraI	GACGTC	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.