Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0003123

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG462800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGATGGGTGCTTCCTCTACGTTGTCGTTTCACAAGTTCCTCTCCGTCCCCCCTTCTCTCTCTCACCTCAAAAATGGCGGGACTTCCTTCTCCTCCTCCTCTCCGACCTCAATGCCACTCCTCCATAGGCCTCGCCCTTCTCTCCTCCGCCTCCACACTCCAAACGCACCGTTTCGCCTCCCCTCCGATCGCAAACCCACCGCCCGCAATGTCAAGCTCCACGCTTCACTCCCAAACCCTCCCCCCTCCTCCGCGATCTCAAACGGCGTCGTTTTCAGCTCCGTGATTACCATAGCCCTGGCCGTCGCCAACCGCGTTCTCTACAAGCTCGCACTCGTCCCCATGAAGAACCACCCCTTCTTTCTGGCCCAATTCATAACCTTTGGTTATGTGGTGATATATTTCTCAATATTGTACATACGGTACCGTTCTGGGATTGTGACTGACGAAATGCTAAGGCTTCCGAAATCGCGGTTCGTGGCTATCGGAGCCTTAGAGGCCCTTGGAGTCGCTTCTGGGATGGCTGCTGCAGCCATGCTTCCCGGACCGGCCATACCCTTATTGAGTCAGACAATGTTGGTGTGGCAGCTGGGTTTTTCTTCTCTTATATTGGGAAAAAGATACAGATGCAATCAGATTGTTGGCTGCATCCTTGTAGCTGTAGGTGTAGCGCTAGCTGTGGCAAGCGGGTCTAATTCTGGCCAGATGCTATCTGGAGTTGAGCCTGTGTGGCCTTTACTAATGATTGCTTCAAGTGCTTTTCAAGCTGGTGCATTTATAATCAAGGAATTTATCTTTGTTGATGCTGCTGTCCACCTTAAGGGAAAATCACTTGACATATTGGTTGTCAACTCTTTTGGATCTGCATATCAGGCTCTTTTTGTACTTCTATTTCTACCTTTCTTATCCAATATGAGAGGCATACCATTTGCCCAACTTCCTACATATCTAAAAGACGGTGCTGGTTGCTTTCTGAATATTGGAGCTGGTGCATCAGGCAAGCTGTTGTATCTGTTTTCATTTTCTTTCTGTTTATCTTCAATTCTATTTAATTTTTTTTTTCCGTTCCTGTTGGGATCCTCTTACCTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006857 GO:0006950 GO:0006952 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0010035 GO:0010038 GO:0015711 GO:0015833 GO:0034635 GO:0042221 GO:0042886 GO:0042939 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0051704 GO:0051707 GO:0071702 GO:0071705 GO:0072337 GO:0072348 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRT-like

Protein Analysis

364

Amino Acids

39.17

Weight (kDa)

10.12

Isoelectric Point (pI)

31.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRT-like	PF08627	90 - 325	1.6e-33	CRT-like, chloroquine-resistance transporter-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24460 AT4G24460 AT4G24460 AT4G24460
fragaria_vesca	FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370
malus_domestica	MD02G1042100.v1.1 MD08G1202100.v1.1 MD08G1202700.v1.1 MD08G1202800.v1.1
prunus_persica	Prupe.1G535300_v2.0.a1 Prupe.1G535300_v2.0.a1
pyrus_communis	pycom08g17510
rosa_chinensis	RchiOBHm_Chr7g0234941 RchiOBHm_Chr7g0234951 RchiOBHm_Chr7g0234961
rosa_laevigata	RLG00000001190 RLG00000001191
rosa_multiflora	Rmu_sc0000039.1_g000013 Rmu_sc0000039.1_g000014 Rmu_sc0000768.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226420 Rroxscaffold_3G00226430
rosa_rugosa	Rorug07G0286700
rosa_samantha	Rh7AG441400 Rh7AG441500 Rh7BG414300 Rh7CG462800 Rh7DG431000
rosa_wichuraiana	Rw7G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	779
Acc65I	GGTACC	1 cut(s)	423
AccB1I	GGYRCC	1 cut(s)	423
AccII	CGCG	3 cut(s)	254, 315, 472
AciI	CCGC	8 cut(s)	78, 148, 201, 205, 252, 313, 472, 687
AclWI	GGATC	3 cut(s)	868, 1071, 1084
AcoI	YGGCCR	3 cut(s)	300, 549, 700
AcsI	RAATTY	1 cut(s)	788
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	3 cut(s)	416, 425, 885
AfeI	AGCGCT	1 cut(s)	672
AfiI	CCNNNNNNNGG	1 cut(s)	820
AflII	CTTAAG	1 cut(s)	818
AgsI	TTSAA	3 cut(s)	753, 764, 1041
AjnI	CCWGG	1 cut(s)	297
AluBI	AGCT	9 cut(s)	217, 279, 328, 589, 659, 677, 767, 986, 1003
AluI	AGCT	9 cut(s)	217, 279, 328, 589, 659, 677, 767, 986, 1003
AlwI	GGATC	3 cut(s)	868, 1071, 1084
Aor51HI	AGCGCT	1 cut(s)	672
AoxI	GGCC	7 cut(s)	128, 300, 366, 498, 549, 700, 731
ApeKI	GCWGC	6 cut(s)	524, 527, 530, 586, 645, 806
ApoI	RAATTY	1 cut(s)	788
Asp718I	GGTACC	1 cut(s)	423
AspLEI	GCGC	1 cut(s)	673
AspS9I	GGNCC	3 cut(s)	367, 499, 545
AsuC2I	CCSGG	1 cut(s)	543
AsuHPI	GGTGA	2 cut(s)	56, 406
AsuNHI	GCTAGC	1 cut(s)	673
AvaII	GGWCC	1 cut(s)	545
BalI	TGGCCA	1 cut(s)	702
BamHI	GGATCC	1 cut(s)	1076
BanI	GGYRCC	1 cut(s)	423
BbvI	GCAGC	6 cut(s)	511, 514, 542, 598, 632, 793
BccI	CCATC	1 cut(s)	514
BceAI	ACGGC	2 cut(s)	280, 287
BcgI	CGANNNNNNTGC	2 cut(s)	94, 128
BciT130I	CCWGG	1 cut(s)	299
BcnI	CCSGG	1 cut(s)	543
BfaI	CTAG	1 cut(s)	674
BfmI	CTRYAG	2 cut(s)	528, 660
BfoI	RGCGCY	1 cut(s)	674
BfrI	CTTAAG	1 cut(s)	818
BglI	GCCNNNNNGGC	2 cut(s)	497, 730
BisI	GCNGC	6 cut(s)	525, 528, 531, 587, 646, 807
BlsI	GCNGC	6 cut(s)	526, 529, 532, 588, 647, 808
Bme1390I	CCNGG	2 cut(s)	299, 543
Bme18I	GGWCC	1 cut(s)	545
BmgT120I	GGNCC	3 cut(s)	367, 499, 545
BmiI	GGNNCC	3 cut(s)	425, 490, 1078
BmrFI	CCNGG	2 cut(s)	299, 543
BmsI	GCATC	5 cut(s)	617, 657, 696, 793, 1001
BmtI	GCTAGC	1 cut(s)	677
BpmI	CTGGAG	1 cut(s)	735
Bpu10I	CCTNAGC	1 cut(s)	455
BpuMI	CCSGG	1 cut(s)	543
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	2 cut(s)	297, 502
Bsc4I	CCNNNNNNNGG	1 cut(s)	820
Bse118I	RCCGGY	1 cut(s)	547
Bse3DI	GCAATG	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	299
BseDI	CCNNGG	2 cut(s)	297, 502
BseGI	GGATG	2 cut(s)	525, 648
BseLI	CCNNNNNNNGG	1 cut(s)	820
BseMI	GCAATG	1 cut(s)	214
BseRI	GAGGAG	6 cut(s)	82, 85, 88, 110, 134, 238
BseXI	GCAGC	6 cut(s)	511, 514, 542, 598, 632, 793
BseYI	CCCAGC	1 cut(s)	589
Bsh1236I	CGCG	3 cut(s)	254, 315, 472
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	7 cut(s)	130, 302, 368, 500, 551, 702, 733
BshNI	GGYRCC	1 cut(s)	423
BsiEI	CGRYCG	1 cut(s)	190
BsiSI	CCGG	2 cut(s)	543, 548
BslFI	GGGAC	3 cut(s)	32, 94, 323
BslI	CCNNNNNNNGG	1 cut(s)	820
BsmFI	GGGAC	3 cut(s)	32, 94, 323
BsnI	GGCC	7 cut(s)	130, 302, 368, 500, 551, 702, 733
Bsp1407I	TGTACA	1 cut(s)	414
Bsp143I	GATC	4 cut(s)	187, 255, 860, 1076
BspACI	CCGC	8 cut(s)	78, 148, 201, 205, 252, 313, 472, 687
BspANI	GGCC	7 cut(s)	130, 302, 368, 500, 551, 702, 733
BspFNI	CGCG	3 cut(s)	254, 315, 472
BspLI	GGNNCC	3 cut(s)	425, 490, 1078
BspMAI	CTGCAG	1 cut(s)	532
BspOI	GCTAGC	1 cut(s)	677
BspPI	GGATC	3 cut(s)	868, 1071, 1084
BspT107I	GGYRCC	1 cut(s)	423
BspTI	CTTAAG	1 cut(s)	818
BsrDI	GCAATG	1 cut(s)	214
BsrFI	RCCGGY	1 cut(s)	547
BsrGI	TGTACA	1 cut(s)	414
BssAI	RCCGGY	1 cut(s)	547
BssECI	CCNNGG	2 cut(s)	297, 502
BssMI	GATC	4 cut(s)	187, 255, 860, 1076
BssNI	GRCGYC	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	502
Bst2UI	CCWGG	1 cut(s)	299
Bst4CI	ACNGT	4 cut(s)	171, 423, 428, 959
BstACI	GRCGYC	1 cut(s)	267
BstAFI	CTTAAG	1 cut(s)	818
BstAUI	TGTACA	1 cut(s)	414
BstC8I	GCNNGC	5 cut(s)	205, 330, 675, 685, 1001
BstDEI	CTNAG	2 cut(s)	455, 493
BstF5I	GGATG	2 cut(s)	525, 648
BstFNI	CGCG	3 cut(s)	254, 315, 472
BstH2I	RGCGCY	1 cut(s)	674
BstHHI	GCGC	1 cut(s)	673
BstKTI	GATC	4 cut(s)	190, 258, 863, 1079
BstMBI	GATC	4 cut(s)	187, 255, 860, 1076
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	7 cut(s)	488, 497, 530, 730, 755, 764, 872
BstNI	CCWGG	1 cut(s)	299
BstSCI	CCNGG	2 cut(s)	297, 541
BstSFI	CTRYAG	2 cut(s)	528, 660
BstUI	CGCG	3 cut(s)	254, 315, 472
BstV1I	GCAGC	6 cut(s)	511, 514, 542, 598, 632, 793
BstX2I	RGATCY	2 cut(s)	860, 1076
BstXI	CCANNNNNNTGG	1 cut(s)	298
BstYI	RGATCY	2 cut(s)	860, 1076
BsuRI	GGCC	7 cut(s)	130, 302, 368, 500, 551, 702, 733
BtsCI	GGATG	2 cut(s)	525, 648
Cac8I	GCNNGC	5 cut(s)	205, 330, 675, 685, 1001
CfoI	GCGC	1 cut(s)	673
Cfr10I	RCCGGY	1 cut(s)	547
Cfr13I	GGNCC	3 cut(s)	367, 499, 545
CpoI	CGGWCCG	1 cut(s)	545
CseI	GACGC	1 cut(s)	256
Csp6I	GTAC	3 cut(s)	415, 424, 884
CspI	CGGWCCG	1 cut(s)	545
CviAII	CATG	2 cut(s)	343, 535
CviQI	GTAC	3 cut(s)	415, 424, 884
DdeI	CTNAG	2 cut(s)	455, 493
DpnI	GATC	4 cut(s)	189, 257, 862, 1078
DpnII	GATC	4 cut(s)	187, 255, 860, 1076
EaeI	YGGCCR	3 cut(s)	300, 549, 700
EciI	GGCGGA	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	502
Eco147I	AGGCCT	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	545
Eco47III	AGCGCT	1 cut(s)	672
EcoO109I	RGGNCCY	1 cut(s)	499
EcoRII	CCWGG	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	502
ErhI	CCWWGG	1 cut(s)	502
FaeI	CATG	2 cut(s)	346, 538
FaqI	GGGAC	3 cut(s)	32, 94, 323
FatI	CATG	2 cut(s)	342, 534
FauI	CCCGC	3 cut(s)	71, 212, 680
Fnu4HI	GCNGC	6 cut(s)	525, 528, 531, 587, 646, 807
FokI	GGATG	2 cut(s)	532, 635
Fsp4HI	GCNGC	6 cut(s)	525, 528, 531, 587, 646, 807
FspBI	CTAG	1 cut(s)	674
GlaI	GCGC	1 cut(s)	672
GluI	GCNGC	6 cut(s)	525, 528, 531, 587, 646, 807
GsaI	CCCAGC	1 cut(s)	593
GsuI	CTGGAG	1 cut(s)	735
HaeII	RGCGCY	1 cut(s)	674
HaeIII	GGCC	7 cut(s)	130, 302, 368, 500, 551, 702, 733
HapII	CCGG	2 cut(s)	543, 548
HgaI	GACGC	1 cut(s)	256
HhaI	GCGC	1 cut(s)	673
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	2 cut(s)	346, 538
Hin6I	GCGC	1 cut(s)	671
HinP1I	GCGC	1 cut(s)	671
HincII	GTYRAC	1 cut(s)	850
HindII	GTYRAC	1 cut(s)	850
HinfI	GANTC	2 cut(s)	507, 565
HpaII	CCGG	2 cut(s)	543, 548
HphI	GGTGA	2 cut(s)	56, 406
Hpy166II	GTNNAC	2 cut(s)	814, 850
Hpy188I	TCNGA	7 cut(s)	105, 187, 465, 488, 570, 636, 975
Hpy188III	TCNNGA	1 cut(s)	714
Hpy8I	GTNNAC	2 cut(s)	814, 850
Hpy99I	CGWCG	2 cut(s)	272, 308
HpyAV	CCTTC	4 cut(s)	63, 97, 147, 367
HpyCH4III	ACNGT	4 cut(s)	171, 423, 428, 959
HpyCH4IV	ACGT	1 cut(s)	20
HpyCH4V	TGCA	6 cut(s)	530, 630, 648, 773, 866, 992
HpyF10VI	GCNNNNNNNGC	7 cut(s)	488, 497, 530, 730, 755, 764, 872
HpyF3I	CTNAG	2 cut(s)	455, 493
HpySE526I	ACGT	1 cut(s)	20
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	2 cut(s)	346, 538
HspAI	GCGC	1 cut(s)	671
KpnI	GGTACC	1 cut(s)	427
Kzo9I	GATC	4 cut(s)	187, 255, 860, 1076
LmnI	GCTCC	4 cut(s)	222, 284, 488, 983
Lsp1109I	GCAGC	6 cut(s)	511, 514, 542, 598, 632, 793
LweI	GCATC	5 cut(s)	617, 657, 696, 793, 1001
MaeI	CTAG	1 cut(s)	674
MaeII	ACGT	1 cut(s)	20
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	4 cut(s)	189, 257, 862, 1078
MboI	GATC	4 cut(s)	187, 255, 860, 1076
MboII	GAAGA	3 cut(s)	358, 591, 1029
MflI	RGATCY	2 cut(s)	860, 1076
MlsI	TGGCCA	1 cut(s)	702
MluCI	AATT	5 cut(s)	371, 694, 788, 1041, 1051
MluNI	TGGCCA	1 cut(s)	702
MlyI	GAGTC	2 cut(s)	516, 574
MmeI	TCCRAC	1 cut(s)	128
Mox20I	TGGCCA	1 cut(s)	702
MscI	TGGCCA	1 cut(s)	702
MseI	TTAA	2 cut(s)	819, 1050
Msp20I	TGGCCA	1 cut(s)	702
MspA1I	CMGCKG	1 cut(s)	589
MspCI	CTTAAG	1 cut(s)	818
MspI	CCGG	2 cut(s)	543, 548
MspR9I	CCNGG	2 cut(s)	299, 543
MvaI	CCWGG	1 cut(s)	299
MvnI	CGCG	3 cut(s)	254, 315, 472
MwoI	GCNNNNNNNGC	7 cut(s)	488, 497, 530, 730, 755, 764, 872
NciI	CCSGG	1 cut(s)	543
NdeII	GATC	4 cut(s)	187, 255, 860, 1076
NheI	GCTAGC	1 cut(s)	673
NlaIII	CATG	2 cut(s)	346, 538
NlaIV	GGNNCC	3 cut(s)	425, 490, 1078
NmuCI	GTSAC	1 cut(s)	439
PceI	AGGCCT	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PfoI	TCCNGGA	1 cut(s)	541
PkrI	GCNGC	6 cut(s)	526, 529, 532, 588, 647, 808
Ple19I	CGATCG	1 cut(s)	190
PleI	GAGTC	2 cut(s)	515, 573
PpsI	GAGTC	2 cut(s)	515, 573
PsiI	TTATAA	1 cut(s)	779
Psp6I	CCWGG	1 cut(s)	297
PspFI	CCCAGC	1 cut(s)	589
PspGI	CCWGG	1 cut(s)	297
PspN4I	GGNNCC	3 cut(s)	425, 490, 1078
PspPI	GGNCC	3 cut(s)	367, 499, 545
PstI	CTGCAG	1 cut(s)	532
PsuI	RGATCY	2 cut(s)	860, 1076
PvuI	CGATCG	1 cut(s)	190
PvuII	CAGCTG	1 cut(s)	589
RsaI	GTAC	3 cut(s)	416, 425, 885
RsaNI	GTAC	3 cut(s)	415, 424, 884
Rsr2I	CGGWCCG	1 cut(s)	545
RsrII	CGGWCCG	1 cut(s)	545
SaqAI	TTAA	2 cut(s)	819, 1050
SatI	GCNGC	6 cut(s)	525, 528, 531, 587, 646, 807
Sau3AI	GATC	4 cut(s)	187, 255, 860, 1076
Sau96I	GGNCC	3 cut(s)	367, 499, 545
SchI	GAGTC	2 cut(s)	516, 574
ScrFI	CCNGG	2 cut(s)	299, 543
SfaNI	GCATC	5 cut(s)	617, 657, 696, 793, 1001
SfcI	CTRYAG	2 cut(s)	528, 660
SinI	GGWCC	1 cut(s)	545
SmlI	CTYRAG	1 cut(s)	818
SmoI	CTYRAG	1 cut(s)	818
Sse9I	AATT	5 cut(s)	371, 694, 788, 1041, 1051
SseBI	AGGCCT	1 cut(s)	130
SsiI	CCGC	8 cut(s)	78, 148, 201, 205, 252, 313, 472, 687
SspI	AATATT	2 cut(s)	411, 979
SspMI	CTAG	1 cut(s)	674
StuI	AGGCCT	1 cut(s)	130
StyD4I	CCNGG	2 cut(s)	297, 541
StyI	CCWWGG	1 cut(s)	502
TaaI	ACNGT	4 cut(s)	171, 423, 428, 959
TaiI	ACGT	1 cut(s)	23
TasI	AATT	5 cut(s)	371, 694, 788, 1041, 1051
TatI	WGTACW	2 cut(s)	414, 883
Tru1I	TTAA	2 cut(s)	819, 1050
Tru9I	TTAA	2 cut(s)	819, 1050
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	6 cut(s)	524, 527, 530, 586, 645, 806
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	3 cut(s)	359, 364, 1008
TspGWI	ACGGA	3 cut(s)	34, 271, 1053
Vha464I	CTTAAG	1 cut(s)	818
VpaK11BI	GGWCC	1 cut(s)	545
XapI	RAATTY	1 cut(s)	788
XcmI	CCANNNNNNNNNTGG	1 cut(s)	710
XspI	CTAG	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.