Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003123

Physical Location & Seq

Genomic Coordinates Reverse (-)

11678573 .. 11684792

Gene Structure 6220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001190

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGGTTCCTCAACGGCGTCGTTTCACAACTTCCTCTCCCTCCCTTCCCACACCCACCACACCAAAAATGGCGCAACTCGCAACCCTTTATTCTCGCACTCAAGCCAACTTCTTCTGCTTCATCAGAGGTGGCGTCATCATCATCGTCATCGGCTAACTCTCGCTGCTCTACACGCACCGTTTTGCCTCACTTCGGATCGCCGACCAAGGTGCATAGCCAGGCGCAATGTCAGGCTGCACGCTTCGGTCGCCAACCCGGCTTCCTCCTCTAATCCGTCGACTTCAAAACGCGTCGTTTTGAGCTCCCTGTTGACCATTGCTCTCGCCGTAGGGAACAAGGTCTTCTACAAGCTCGCACTCGTTCCCATGAAGAACCACCCTTTCTTTTTCGCCCAATTCACTACCTTCGGTTATGTGATTATATACTTTTCAATACTGTACCTACGGTACCGTTCTGGGAGGGTGACGGATGAAATGATAGCCCTTCCCAAAGCTCCATTTGTGGCCATTGGTGCCTTGGATGCACTTGGAGTCGCTGCTGGGATGGCTGCTGTAGCCATGCTTCCCGGACCGGCCATACCCTTATTGAGTCAGACAATGTTGGTGTGGCAGCTGGGTTTTTCTTCTCTTATCTTGGGAAAAAGATACAGATGCAATCAGATTGTTGGCTGCATCCTTGTAGCTGTGGGTGTAGCGCTAGCTGTGGCAAGCGGGTCTGATTCTGGCCAGATGCTATCTGGAGTTGAGCCTGTGTGGCCTCTACTAATGATTGCTTCAAGTGCTTTTCAAGCTGGTGCATTTATAATCAAGGAATTTATCTTTGTTGATGCTGCTGTCCACCTTAAGGAAAAATCACTTGACATATTGGTTGTCAACTCTTTTGGATCTGCATATCAGGCTCTTTTTGTACTTCTATTGCTACCTTTCTTATCCAATATGAGAGGCATACCATTTGCCCAACTTCCTACATATCTAAAAGACGGTGCTGGTTGCTTTCTGAATATTGGAGCTGGTGCATCAGGCAAGCTGTTGTATCTGCTTTCATTTTCTTTCTGTTTATCTTCAATTCTATTTAATTTTTTTTTTCATTCCTGTTGGGATCCTCTTACCTCTTGTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006857 GO:0006950 GO:0006952 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0010035 GO:0010038 GO:0015711 GO:0015833 GO:0034635 GO:0042221 GO:0042886 GO:0042939 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0051704 GO:0051707 GO:0071702 GO:0071705 GO:0072337 GO:0072348 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRT-like

Protein Analysis

374

Amino Acids

40.66

Weight (kDa)

9.93

Isoelectric Point (pI)

35.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRT-like	PF08627	99 - 333	2.1e-35	CRT-like, chloroquine-resistance transporter-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24460 AT4G24460 AT4G24460 AT4G24460
fragaria_vesca	FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370
malus_domestica	MD02G1042100.v1.1 MD08G1202100.v1.1 MD08G1202700.v1.1 MD08G1202800.v1.1
prunus_persica	Prupe.1G535300_v2.0.a1 Prupe.1G535300_v2.0.a1
pyrus_communis	pycom08g17510
rosa_chinensis	RchiOBHm_Chr7g0234941 RchiOBHm_Chr7g0234951 RchiOBHm_Chr7g0234961
rosa_laevigata	RLG00000001190 RLG00000001191
rosa_multiflora	Rmu_sc0000039.1_g000013 Rmu_sc0000039.1_g000014 Rmu_sc0000768.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226420 Rroxscaffold_3G00226430
rosa_rugosa	Rorug07G0286700
rosa_samantha	Rh7AG441400 Rh7AG441500 Rh7BG414300 Rh7CG462800 Rh7DG431000
rosa_wichuraiana	Rw7G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	803
Acc65I	GGTACC	1 cut(s)	447
AccB1I	GGYRCC	2 cut(s)	447, 512
AccI	GTMKAC	1 cut(s)	278
AccII	CGCG	1 cut(s)	291
AciI	CCGC	1 cut(s)	711
AclWI	GGATC	4 cut(s)	204, 892, 1094, 1107
AcoI	YGGCCR	3 cut(s)	504, 573, 724
AcsI	RAATTY	1 cut(s)	812
AcyI	GRCGYC	2 cut(s)	17, 133
AfaI	GTAC	3 cut(s)	440, 449, 909
AfeI	AGCGCT	1 cut(s)	696
AfiI	CCNNNNNNNGG	2 cut(s)	193, 844
AflII	CTTAAG	1 cut(s)	842
AflIII	ACRYGT	1 cut(s)	289
AgsI	TTSAA	5 cut(s)	285, 432, 777, 788, 1065
AjnI	CCWGG	1 cut(s)	218
AluBI	AGCT	9 cut(s)	303, 352, 494, 613, 683, 701, 791, 1010, 1027
AluI	AGCT	9 cut(s)	303, 352, 494, 613, 683, 701, 791, 1010, 1027
Alw21I	GWGCWC	1 cut(s)	305
AlwI	GGATC	4 cut(s)	204, 892, 1094, 1107
Aor51HI	AGCGCT	1 cut(s)	696
AoxI	GGCC	4 cut(s)	504, 573, 724, 755
ApeKI	GCWGC	7 cut(s)	164, 235, 536, 548, 610, 669, 830
ApoI	RAATTY	1 cut(s)	812
Asp718I	GGTACC	1 cut(s)	447
AspLEI	GCGC	3 cut(s)	74, 225, 697
AspS9I	GGNCC	1 cut(s)	569
AsuC2I	CCSGG	2 cut(s)	257, 567
AsuHPI	GGTGA	1 cut(s)	475
AsuNHI	GCTAGC	1 cut(s)	697
AvaII	GGWCC	1 cut(s)	569
BalI	TGGCCA	2 cut(s)	506, 726
BamHI	GGATCC	1 cut(s)	1099
BanI	GGYRCC	2 cut(s)	447, 512
BanII	GRGCYC	1 cut(s)	305
BarI	GAAGNNNNNNTAC	2 cut(s)	546, 578
BbsI	GAAGAC	1 cut(s)	334
Bbv12I	GWGCWC	1 cut(s)	305
BbvI	GCAGC	7 cut(s)	151, 222, 523, 535, 622, 656, 817
BccI	CCATC	1 cut(s)	538
BceAI	ACGGC	2 cut(s)	30, 311
BcgI	CGANNNNNNTGC	2 cut(s)	192, 226
BciT130I	CCWGG	1 cut(s)	220
BcnI	CCSGG	2 cut(s)	257, 567
BfaI	CTAG	1 cut(s)	698
BfmI	CTRYAG	1 cut(s)	552
BfoI	RGCGCY	1 cut(s)	698
BfrI	CTTAAG	1 cut(s)	842
BglI	GCCNNNNNGGC	2 cut(s)	257, 754
BisI	GCNGC	7 cut(s)	165, 236, 537, 549, 611, 670, 831
BlsI	GCNGC	7 cut(s)	166, 237, 538, 550, 612, 671, 832
Bme1390I	CCNGG	3 cut(s)	220, 257, 567
Bme18I	GGWCC	1 cut(s)	569
BmgT120I	GGNCC	1 cut(s)	569
BmiI	GGNNCC	4 cut(s)	7, 449, 514, 1101
BmrFI	CCNGG	3 cut(s)	220, 257, 567
BmsI	GCATC	6 cut(s)	511, 641, 681, 720, 817, 1025
BmtI	GCTAGC	1 cut(s)	701
BpiI	GAAGAC	1 cut(s)	334
BpmI	CTGGAG	1 cut(s)	759
BpuEI	CTTGAG	1 cut(s)	85
BpuMI	CCSGG	2 cut(s)	257, 567
BsaHI	GRCGYC	2 cut(s)	17, 133
BsaJI	CCNNGG	2 cut(s)	206, 516
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 844
Bse118I	RCCGGY	1 cut(s)	571
Bse3DI	GCAATG	2 cut(s)	232, 315
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	2 cut(s)	206, 516
BseGI	GGATG	4 cut(s)	475, 526, 549, 672
BseLI	CCNNNNNNNGG	2 cut(s)	193, 844
BseMI	GCAATG	2 cut(s)	232, 315
BseRI	GAGGAG	1 cut(s)	256
BseXI	GCAGC	7 cut(s)	151, 222, 523, 535, 622, 656, 817
BseYI	CCCAGC	2 cut(s)	539, 613
BsgI	GTGCAG	1 cut(s)	221
Bsh1236I	CGCG	1 cut(s)	291
Bsh1285I	CGRYCG	1 cut(s)	249
BshFI	GGCC	4 cut(s)	506, 575, 726, 757
BshNI	GGYRCC	2 cut(s)	447, 512
BsiEI	CGRYCG	1 cut(s)	249
BsiHKAI	GWGCWC	1 cut(s)	305
BsiSI	CCGG	3 cut(s)	257, 567, 572
BslI	CCNNNNNNNGG	2 cut(s)	193, 844
BsnI	GGCC	4 cut(s)	506, 575, 726, 757
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp143I	GATC	3 cut(s)	196, 884, 1099
BspACI	CCGC	1 cut(s)	711
BspANI	GGCC	4 cut(s)	506, 575, 726, 757
BspFNI	CGCG	1 cut(s)	291
BspLI	GGNNCC	4 cut(s)	7, 449, 514, 1101
BspOI	GCTAGC	1 cut(s)	701
BspPI	GGATC	4 cut(s)	204, 892, 1094, 1107
BspT107I	GGYRCC	2 cut(s)	447, 512
BspTI	CTTAAG	1 cut(s)	842
BsrDI	GCAATG	2 cut(s)	232, 315
BsrFI	RCCGGY	1 cut(s)	571
BssAI	RCCGGY	1 cut(s)	571
BssECI	CCNNGG	2 cut(s)	206, 516
BssMI	GATC	3 cut(s)	196, 884, 1099
BssNI	GRCGYC	2 cut(s)	17, 133
BssT1I	CCWWGG	2 cut(s)	206, 516
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	5 cut(s)	180, 438, 447, 452, 983
BstACI	GRCGYC	2 cut(s)	17, 133
BstAFI	CTTAAG	1 cut(s)	842
BstC8I	GCNNGC	5 cut(s)	240, 354, 699, 709, 1025
BstF5I	GGATG	4 cut(s)	475, 526, 549, 672
BstFNI	CGCG	1 cut(s)	291
BstH2I	RGCGCY	1 cut(s)	698
BstHHI	GCGC	3 cut(s)	74, 225, 697
BstKTI	GATC	3 cut(s)	199, 887, 1102
BstMBI	GATC	3 cut(s)	196, 884, 1099
BstMCI	CGRYCG	1 cut(s)	249
BstNI	CCWGG	1 cut(s)	220
BstSCI	CCNGG	3 cut(s)	218, 255, 565
BstSFI	CTRYAG	1 cut(s)	552
BstUI	CGCG	1 cut(s)	291
BstV1I	GCAGC	7 cut(s)	151, 222, 523, 535, 622, 656, 817
BstV2I	GAAGAC	1 cut(s)	334
BstX2I	RGATCY	2 cut(s)	884, 1099
BstYI	RGATCY	2 cut(s)	884, 1099
BsuRI	GGCC	4 cut(s)	506, 575, 726, 757
BtsCI	GGATG	4 cut(s)	475, 526, 549, 672
Cac8I	GCNNGC	5 cut(s)	240, 354, 699, 709, 1025
CfoI	GCGC	3 cut(s)	74, 225, 697
Cfr10I	RCCGGY	1 cut(s)	571
Cfr13I	GGNCC	1 cut(s)	569
CpoI	CGGWCCG	1 cut(s)	569
CseI	GACGC	3 cut(s)	6, 122, 280
Csp6I	GTAC	3 cut(s)	439, 448, 908
CspI	CGGWCCG	1 cut(s)	569
CviAII	CATG	2 cut(s)	367, 559
CviQI	GTAC	3 cut(s)	439, 448, 908
DpnI	GATC	3 cut(s)	198, 886, 1101
DpnII	GATC	3 cut(s)	196, 884, 1099
EaeI	YGGCCR	3 cut(s)	504, 573, 724
Ecl136II	GAGCTC	1 cut(s)	303
Eco130I	CCWWGG	2 cut(s)	206, 516
Eco24I	GRGCYC	1 cut(s)	305
Eco47I	GGWCC	1 cut(s)	569
Eco47III	AGCGCT	1 cut(s)	696
Eco53kI	GAGCTC	1 cut(s)	303
EcoICRI	GAGCTC	1 cut(s)	303
EcoRII	CCWGG	1 cut(s)	218
EcoT14I	CCWWGG	2 cut(s)	206, 516
EcoT38I	GRGCYC	1 cut(s)	305
ErhI	CCWWGG	2 cut(s)	206, 516
FaeI	CATG	2 cut(s)	370, 562
FatI	CATG	2 cut(s)	366, 558
FauI	CCCGC	1 cut(s)	704
FblI	GTMKAC	1 cut(s)	278
Fnu4HI	GCNGC	7 cut(s)	165, 236, 537, 549, 611, 670, 831
FokI	GGATG	4 cut(s)	482, 533, 556, 659
FriOI	GRGCYC	1 cut(s)	305
Fsp4HI	GCNGC	7 cut(s)	165, 236, 537, 549, 611, 670, 831
FspBI	CTAG	1 cut(s)	698
GlaI	GCGC	3 cut(s)	73, 224, 696
GluI	GCNGC	7 cut(s)	165, 236, 537, 549, 611, 670, 831
GsaI	CCCAGC	2 cut(s)	543, 617
GsuI	CTGGAG	1 cut(s)	759
HaeII	RGCGCY	1 cut(s)	698
HaeIII	GGCC	4 cut(s)	506, 575, 726, 757
HapII	CCGG	3 cut(s)	257, 567, 572
HgaI	GACGC	3 cut(s)	6, 122, 280
HhaI	GCGC	3 cut(s)	74, 225, 697
Hin1I	GRCGYC	2 cut(s)	17, 133
Hin1II	CATG	2 cut(s)	370, 562
Hin6I	GCGC	3 cut(s)	72, 223, 695
HinP1I	GCGC	3 cut(s)	72, 223, 695
HincII	GTYRAC	3 cut(s)	279, 312, 874
HindII	GTYRAC	3 cut(s)	279, 312, 874
HinfI	GANTC	3 cut(s)	531, 589, 719
HpaII	CCGG	3 cut(s)	257, 567, 572
HphI	GGTGA	1 cut(s)	475
Hpy166II	GTNNAC	4 cut(s)	279, 312, 838, 874
Hpy188I	TCNGA	6 cut(s)	126, 196, 594, 660, 718, 999
Hpy188III	TCNNGA	1 cut(s)	738
Hpy8I	GTNNAC	4 cut(s)	279, 312, 838, 874
Hpy99I	CGWCG	3 cut(s)	22, 280, 296
HpyAV	CCTTC	3 cut(s)	54, 415, 494
HpyCH4III	ACNGT	5 cut(s)	180, 438, 447, 452, 983
HpyCH4V	TGCA	8 cut(s)	213, 238, 524, 654, 672, 797, 890, 1016
Hsp92I	GRCGYC	2 cut(s)	17, 133
Hsp92II	CATG	2 cut(s)	370, 562
HspAI	GCGC	3 cut(s)	72, 223, 695
KpnI	GGTACC	1 cut(s)	451
Kzo9I	GATC	3 cut(s)	196, 884, 1099
LmnI	GCTCC	3 cut(s)	308, 499, 1007
Lsp1109I	GCAGC	7 cut(s)	151, 222, 523, 535, 622, 656, 817
LweI	GCATC	6 cut(s)	511, 641, 681, 720, 817, 1025
MaeI	CTAG	1 cut(s)	698
MaeIII	GTNAC	1 cut(s)	463
MalI	GATC	3 cut(s)	198, 886, 1101
MboI	GATC	3 cut(s)	196, 884, 1099
MboII	GAAGA	5 cut(s)	104, 334, 382, 615, 1053
MflI	RGATCY	2 cut(s)	884, 1099
MhlI	GDGCHC	1 cut(s)	305
MlsI	TGGCCA	2 cut(s)	506, 726
MluCI	AATT	4 cut(s)	395, 812, 1065, 1075
MluI	ACGCGT	1 cut(s)	289
MluNI	TGGCCA	2 cut(s)	506, 726
MlyI	GAGTC	2 cut(s)	540, 598
Mox20I	TGGCCA	2 cut(s)	506, 726
MscI	TGGCCA	2 cut(s)	506, 726
MseI	TTAA	3 cut(s)	843, 1074, 1120
Msp20I	TGGCCA	2 cut(s)	506, 726
MspA1I	CMGCKG	1 cut(s)	613
MspCI	CTTAAG	1 cut(s)	842
MspI	CCGG	3 cut(s)	257, 567, 572
MspR9I	CCNGG	3 cut(s)	220, 257, 567
MvaI	CCWGG	1 cut(s)	220
MvnI	CGCG	1 cut(s)	291
NciI	CCSGG	2 cut(s)	257, 567
NdeII	GATC	3 cut(s)	196, 884, 1099
NheI	GCTAGC	1 cut(s)	697
NlaIII	CATG	2 cut(s)	370, 562
NlaIV	GGNNCC	4 cut(s)	7, 449, 514, 1101
NmuCI	GTSAC	1 cut(s)	463
PfeI	GAWTC	1 cut(s)	719
PfoI	TCCNGGA	1 cut(s)	565
PkrI	GCNGC	7 cut(s)	166, 237, 538, 550, 612, 671, 832
PleI	GAGTC	2 cut(s)	539, 597
PpsI	GAGTC	2 cut(s)	539, 597
PsiI	TTATAA	1 cut(s)	803
Psp124BI	GAGCTC	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	218
PspFI	CCCAGC	2 cut(s)	539, 613
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	4 cut(s)	7, 449, 514, 1101
PspPI	GGNCC	1 cut(s)	569
PsuI	RGATCY	2 cut(s)	884, 1099
PvuII	CAGCTG	1 cut(s)	613
RsaI	GTAC	3 cut(s)	440, 449, 909
RsaNI	GTAC	3 cut(s)	439, 448, 908
Rsr2I	CGGWCCG	1 cut(s)	569
RsrII	CGGWCCG	1 cut(s)	569
SacI	GAGCTC	1 cut(s)	305
SalI	GTCGAC	1 cut(s)	277
SaqAI	TTAA	3 cut(s)	843, 1074, 1120
SatI	GCNGC	7 cut(s)	165, 236, 537, 549, 611, 670, 831
Sau3AI	GATC	3 cut(s)	196, 884, 1099
Sau96I	GGNCC	1 cut(s)	569
SchI	GAGTC	2 cut(s)	540, 598
ScrFI	CCNGG	3 cut(s)	220, 257, 567
SduI	GDGCHC	1 cut(s)	305
SfaNI	GCATC	6 cut(s)	511, 641, 681, 720, 817, 1025
SfcI	CTRYAG	1 cut(s)	552
SinI	GGWCC	1 cut(s)	569
SmlI	CTYRAG	2 cut(s)	100, 842
SmoI	CTYRAG	2 cut(s)	100, 842
Sse9I	AATT	4 cut(s)	395, 812, 1065, 1075
SsiI	CCGC	1 cut(s)	711
SspI	AATATT	1 cut(s)	1003
SspMI	CTAG	1 cut(s)	698
SstI	GAGCTC	1 cut(s)	305
StyD4I	CCNGG	3 cut(s)	218, 255, 565
StyI	CCWWGG	2 cut(s)	206, 516
TaaI	ACNGT	5 cut(s)	180, 438, 447, 452, 983
TaqI	TCGA	1 cut(s)	278
TaqII	GACCGA	1 cut(s)	235
TasI	AATT	4 cut(s)	395, 812, 1065, 1075
TatI	WGTACW	1 cut(s)	907
TfiI	GAWTC	1 cut(s)	719
Tru1I	TTAA	3 cut(s)	843, 1074, 1120
Tru9I	TTAA	3 cut(s)	843, 1074, 1120
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	7 cut(s)	164, 235, 536, 548, 610, 669, 830
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	5 cut(s)	110, 383, 486, 1032, 1076
TspGWI	ACGGA	2 cut(s)	264, 482
Vha464I	CTTAAG	1 cut(s)	842
VpaK11BI	GGWCC	1 cut(s)	569
XapI	RAATTY	1 cut(s)	812
XcmI	CCANNNNNNNNNTGG	3 cut(s)	65, 514, 734
XmiI	GTMKAC	1 cut(s)	278
XspI	CTAG	1 cut(s)	698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.