Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003123

Physical Location & Seq

Genomic Coordinates Forward (+)

27901028 .. 27902218

Gene Structure 1191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0286700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGGATTTGGTGTTGAGCGCCATGCTATAAATTCATGGGAGTTCTATTCAAATTTGGATTCTGATGAGATTCCAAGAAGCGAAAATGAGAGGAAAAGGAAAAAAGCATTCTTGGTTGTGGGTGTTGTAGTTTCCTTCATCCTTTTGATGCTTTGTATGGTCATATGGCGGATTATGGGAAGGAGGCGGATAAACAGAACTGATGGAAATAATTACTCTCATGATGTCTCCAACTCTATGGATACAGATCTTGAGATTCTAGCTCTGCCAAGACGATTTACTTACCAAGAATTGGTTGCAGCCACCAATGGCTTTGCAAATGACATAAGGTTAGGCCATGGTGGATCTAGACAGGTTTATAAAGATCATACAAGATCTGGGGTGTGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006857 GO:0006950 GO:0006952 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0010035 GO:0010038 GO:0015711 GO:0015833 GO:0034635 GO:0042221 GO:0042886 GO:0042939 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0051704 GO:0051707 GO:0071702 GO:0071705 GO:0072337 GO:0072348 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRT-like

Protein Analysis

130

Amino Acids

14.93

Weight (kDa)

9.09

Isoelectric Point (pI)

45.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24460 AT4G24460 AT4G24460 AT4G24460
fragaria_vesca	FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370
malus_domestica	MD02G1042100.v1.1 MD08G1202100.v1.1 MD08G1202700.v1.1 MD08G1202800.v1.1
prunus_persica	Prupe.1G535300_v2.0.a1 Prupe.1G535300_v2.0.a1
pyrus_communis	pycom08g17510
rosa_chinensis	RchiOBHm_Chr7g0234941 RchiOBHm_Chr7g0234951 RchiOBHm_Chr7g0234961
rosa_laevigata	RLG00000001190 RLG00000001191
rosa_multiflora	Rmu_sc0000039.1_g000013 Rmu_sc0000039.1_g000014 Rmu_sc0000768.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226420 Rroxscaffold_3G00226430
rosa_rugosa	Rorug07G0286700
rosa_samantha	Rh7AG441400 Rh7AG441500 Rh7BG414300 Rh7CG462800 Rh7DG431000
rosa_wichuraiana	Rw7G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	360
AccB7I	CCANNNNNTGG	1 cut(s)	292
AciI	CCGC	2 cut(s)	169, 187
AclWI	GGATC	1 cut(s)	352
AcsI	RAATTY	2 cut(s)	31, 52
AfiI	CCNNNNNNNGG	1 cut(s)	292
AgsI	TTSAA	1 cut(s)	51
AluBI	AGCT	1 cut(s)	263
AluI	AGCT	1 cut(s)	263
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	1 cut(s)	352
AoxI	GGCC	1 cut(s)	334
ApeKI	GCWGC	1 cut(s)	299
ApoI	RAATTY	2 cut(s)	31, 52
AspLEI	GCGC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	311
BccI	CCATC	1 cut(s)	197
BciVI	GTATCC	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	232
BfaI	CTAG	2 cut(s)	260, 348
BfoI	RGCGCY	1 cut(s)	22
BfuI	GTATCC	1 cut(s)	235
BglII	AGATCT	2 cut(s)	247, 374
BisI	GCNGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	301
BmsI	GCATC	1 cut(s)	138
BpuEI	CTTGAG	1 cut(s)	272
BsaBI	GATNNNNATC	1 cut(s)	246
BsaJI	CCNNGG	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
Bse8I	GATNNNNATC	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	337
BseGI	GGATG	1 cut(s)	138
BseJI	GATNNNNATC	1 cut(s)	246
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseXI	GCAGC	1 cut(s)	311
BshFI	GGCC	1 cut(s)	336
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmAI	GTCTC	1 cut(s)	232
BsmI	GAATGC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	336
Bsp143I	GATC	4 cut(s)	247, 344, 364, 374
Bsp19I	CCATGG	1 cut(s)	337
BspACI	CCGC	2 cut(s)	169, 187
BspANI	GGCC	1 cut(s)	336
BspHI	TCATGA	1 cut(s)	220
BspPI	GGATC	1 cut(s)	352
BssECI	CCNNGG	1 cut(s)	337
BssMI	GATC	4 cut(s)	247, 344, 364, 374
BssT1I	CCWWGG	1 cut(s)	337
BstDSI	CCRYGG	1 cut(s)	337
BstF5I	GGATG	1 cut(s)	138
BstH2I	RGCGCY	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	4 cut(s)	250, 347, 367, 377
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	4 cut(s)	247, 344, 364, 374
BstV1I	GCAGC	1 cut(s)	311
BstX2I	RGATCY	3 cut(s)	247, 344, 374
BstXI	CCANNNNNNTGG	1 cut(s)	238
BstYI	RGATCY	3 cut(s)	247, 344, 374
BsuI	GTATCC	1 cut(s)	235
BsuRI	GGCC	1 cut(s)	336
BtgI	CCRYGG	1 cut(s)	337
BtsCI	GGATG	1 cut(s)	138
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	1 cut(s)	21
CviAII	CATG	4 cut(s)	23, 36, 221, 338
CviJI	RGCY	4 cut(s)	263, 302, 312, 336
CviKI_1	RGCY	4 cut(s)	263, 302, 312, 336
DpnI	GATC	4 cut(s)	249, 346, 366, 376
DpnII	GATC	4 cut(s)	247, 344, 364, 374
EciI	GGCGGA	2 cut(s)	184, 202
Eco130I	CCWWGG	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	337
FaeI	CATG	4 cut(s)	26, 39, 224, 341
FatI	CATG	4 cut(s)	22, 35, 220, 337
FauNDI	CATATG	1 cut(s)	164
Fnu4HI	GCNGC	1 cut(s)	300
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	300
FspBI	CTAG	2 cut(s)	260, 348
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	1 cut(s)	300
HaeII	RGCGCY	1 cut(s)	22
HaeIII	GGCC	1 cut(s)	336
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	4 cut(s)	26, 39, 224, 341
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HinfI	GANTC	3 cut(s)	59, 70, 256
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	3 cut(s)	221, 251, 348
HpyAV	CCTTC	2 cut(s)	145, 174
HpyCH4V	TGCA	3 cut(s)	299, 317, 387
Hsp92II	CATG	4 cut(s)	26, 39, 224, 341
HspAI	GCGC	1 cut(s)	19
Kzo9I	GATC	4 cut(s)	247, 344, 364, 374
LpnPI	CCDG	2 cut(s)	338, 363
Lsp1109I	GCAGC	1 cut(s)	311
LweI	GCATC	1 cut(s)	138
MaeI	CTAG	2 cut(s)	260, 348
MalI	GATC	4 cut(s)	249, 346, 366, 376
MboI	GATC	4 cut(s)	247, 344, 364, 374
MflI	RGATCY	3 cut(s)	247, 344, 374
MluCI	AATT	4 cut(s)	31, 52, 211, 290
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	2 cut(s)	84, 177
Mva1269I	GAATGC	1 cut(s)	107
NcoI	CCATGG	1 cut(s)	337
NdeI	CATATG	1 cut(s)	164
NdeII	GATC	4 cut(s)	247, 344, 364, 374
NlaIII	CATG	4 cut(s)	26, 39, 224, 341
PagI	TCATGA	1 cut(s)	220
PctI	GAATGC	1 cut(s)	107
PfeI	GAWTC	3 cut(s)	59, 70, 256
PflMI	CCANNNNNTGG	1 cut(s)	292
PkrI	GCNGC	1 cut(s)	301
PsiI	TTATAA	1 cut(s)	360
PsuI	RGATCY	3 cut(s)	247, 344, 374
SatI	GCNGC	1 cut(s)	300
Sau3AI	GATC	4 cut(s)	247, 344, 364, 374
SetI	ASST	3 cut(s)	265, 332, 357
SfaNI	GCATC	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	4 cut(s)	31, 52, 211, 290
SsiI	CCGC	2 cut(s)	169, 187
SspMI	CTAG	2 cut(s)	260, 348
StyI	CCWWGG	1 cut(s)	337
TasI	AATT	4 cut(s)	31, 52, 211, 290
TfiI	GAWTC	3 cut(s)	59, 70, 256
TseI	GCWGC	1 cut(s)	299
TspDTI	ATGAA	2 cut(s)	24, 127
Van91I	CCANNNNNTGG	1 cut(s)	292
XapI	RAATTY	2 cut(s)	31, 52
XbaI	TCTAGA	1 cut(s)	347
XspI	CTAG	2 cut(s)	260, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.