Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000039.1

Orthogroup ID

OG0003123

Physical Location & Seq

Genomic Coordinates Forward (+)

108331 .. 114129

Gene Structure 5799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000039.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

atgggttcctcaacggcgtcgtttcacaacttcctctccctcccttcccacaccaaaaatggcgcaactcgcaaccctttattctcacactcaaggccgcttcttctgcttcatcagaggcggcgtcatcatcgtcgtcaccggctctctctcgctactctaaacgcaccgttttgcctcacttcggatcgcggacccgccgggcgcaatgtcaggctgcacgcttcggtcgccaacccggcttcctcctctaatccgtcgacttcaaaacgcgtcgttttgagctccctgttgaccgttgctctcgccgtcggcaacaaggtcttctacaagctcgcactcgttcccatgaagaaccaccctttctttttcgcccaattcactaccttcggttatgtgattatatacttttcaatactgtacctacggtaccgttctgggagggtgacggatgaaatgctagcccttcccaaagctccgtttgtggccattggtgccttggatgctctcggggtcgctgctgggatggctgccgtagccatgcttcccggaccggccatacccttattgagtcagacaatgttggtgtggcagctgggtttttcttctcttatcttgggaaaaagatacagatgcaatcagattgttggctgcatccttgtagctgtaggtgtagcgctagctgtggcaagcgggtctgattctggccagatgctatctggagttgagcctgtgtggcctctactaatgattgcttcaagtgcttttcaagctggtgcatttataatcaaggaatttatctttgttgatgctgctgtccaccttaaggaaaaatcacttgacatattggttgtcaactcttttggatctgcatatcaggctctttttgtacttctatttctacctttcttatccaatatgagaggcataccatttgcccaacttcctacatatctaaaagacggtgctggttgctttctgaatattggagctggtgcatcaggttgcaatggagctccattgctccccctgctttatgtagctgccaatctgttgttcaatatatccttgatgaacgtagtaaagatttcttcggcagtcgtttcttctctcgttgtgatgttgtcagtgccaatctcgatttatgttctttcccttccattgccatatctccaagagggtgcaactttgagcccttttttcctctttggtagtgcaattcttgtcttgggtcttattctgtacagcataccccagcctgccaaggatgttggtaaaattaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006857 GO:0006950 GO:0006952 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0010035 GO:0010038 GO:0015711 GO:0015833 GO:0034635 GO:0042221 GO:0042886 GO:0042939 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0051704 GO:0051707 GO:0071702 GO:0071705 GO:0072337 GO:0072348 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRT-like

Protein Analysis

428

Amino Acids

45.83

Weight (kDa)

10.02

Isoelectric Point (pI)

37.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24460 AT4G24460 AT4G24460 AT4G24460
fragaria_vesca	FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370 FvH4_5g34370
malus_domestica	MD02G1042100.v1.1 MD08G1202100.v1.1 MD08G1202700.v1.1 MD08G1202800.v1.1
prunus_persica	Prupe.1G535300_v2.0.a1 Prupe.1G535300_v2.0.a1
pyrus_communis	pycom08g17510
rosa_chinensis	RchiOBHm_Chr7g0234941 RchiOBHm_Chr7g0234951 RchiOBHm_Chr7g0234961
rosa_laevigata	RLG00000001190 RLG00000001191
rosa_multiflora	Rmu_sc0000039.1_g000013 Rmu_sc0000039.1_g000014 Rmu_sc0000768.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226420 Rroxscaffold_3G00226430
rosa_rugosa	Rorug07G0286700
rosa_samantha	Rh7AG441400 Rh7AG441500 Rh7BG414300 Rh7CG462800 Rh7DG431000
rosa_wichuraiana	Rw7G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	785
Acc65I	GGTACC	1 cut(s)	429
AccB1I	GGYRCC	2 cut(s)	429, 494
AccI	GTMKAC	1 cut(s)	260
AccII	CGCG	2 cut(s)	192, 273
AciI	CCGC	5 cut(s)	98, 121, 192, 198, 693
AclWI	GGATC	2 cut(s)	195, 874
AcoI	YGGCCR	3 cut(s)	486, 555, 706
AcsI	RAATTY	1 cut(s)	794
AcyI	GRCGYC	2 cut(s)	17, 124
AfaI	GTAC	4 cut(s)	422, 431, 891, 1244
AfeI	AGCGCT	1 cut(s)	678
AfiI	CCNNNNNNNGG	2 cut(s)	184, 826
AflII	CTTAAG	1 cut(s)	824
AflIII	ACRYGT	1 cut(s)	271
AgsI	TTSAA	5 cut(s)	267, 414, 759, 770, 1060
AjuI	GAANNNNNNNTTGG	2 cut(s)	1040, 1072
Alw21I	GWGCWC	2 cut(s)	287, 1018
AlwI	GGATC	2 cut(s)	195, 874
Ama87I	CYCGRG	1 cut(s)	509
Aor51HI	AGCGCT	1 cut(s)	678
AoxI	GGCC	5 cut(s)	95, 486, 555, 706, 737
ApeKI	GCWGC	7 cut(s)	217, 518, 530, 592, 651, 812, 1043
ApoI	RAATTY	1 cut(s)	794
AseI	ATTAAT	1 cut(s)	1281
Asp718I	GGTACC	1 cut(s)	429
AspLEI	GCGC	3 cut(s)	65, 207, 679
AspS9I	GGNCC	2 cut(s)	194, 551
AsuC2I	CCSGG	3 cut(s)	202, 239, 549
AsuHPI	GGTGA	2 cut(s)	131, 457
AsuNHI	GCTAGC	2 cut(s)	460, 679
AvaI	CYCGRG	1 cut(s)	509
AvaII	GGWCC	2 cut(s)	194, 551
BalI	TGGCCA	2 cut(s)	488, 708
BanI	GGYRCC	2 cut(s)	429, 494
BanII	GRGCYC	3 cut(s)	287, 1018, 1196
BarI	GAAGNNNNNNTAC	2 cut(s)	528, 560
BbsI	GAAGAC	1 cut(s)	316
Bbv12I	GWGCWC	2 cut(s)	287, 1018
BbvI	GCAGC	7 cut(s)	204, 505, 517, 604, 638, 799, 1030
BccI	CCATC	1 cut(s)	520
BceAI	ACGGC	3 cut(s)	30, 293, 518
BcnI	CCSGG	3 cut(s)	202, 239, 549
BfaI	CTAG	2 cut(s)	461, 680
BfmI	CTRYAG	1 cut(s)	666
BfoI	RGCGCY	1 cut(s)	680
BfrI	CTTAAG	1 cut(s)	824
BglI	GCCNNNNNGGC	2 cut(s)	239, 736
BisI	GCNGC	9 cut(s)	98, 122, 218, 519, 531, 593, 652, 813, 1044
BlsI	GCNGC	9 cut(s)	99, 123, 219, 520, 532, 594, 653, 814, 1045
Bme1390I	CCNGG	3 cut(s)	202, 239, 549
Bme18I	GGWCC	2 cut(s)	194, 551
BmeT110I	CYCGRG	1 cut(s)	509
BmgT120I	GGNCC	2 cut(s)	194, 551
BmiI	GGNNCC	4 cut(s)	7, 196, 431, 496
BmrFI	CCNGG	3 cut(s)	202, 239, 549
BmsI	GCATC	6 cut(s)	493, 623, 663, 702, 799, 1007
BmtI	GCTAGC	2 cut(s)	464, 683
BpiI	GAAGAC	1 cut(s)	316
BpmI	CTGGAG	1 cut(s)	741
BpuEI	CTTGAG	1 cut(s)	76
BpuMI	CCSGG	3 cut(s)	202, 239, 549
BsaHI	GRCGYC	2 cut(s)	17, 124
BsaJI	CCNNGG	2 cut(s)	498, 1263
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 826
Bse118I	RCCGGY	2 cut(s)	141, 553
Bse3DI	GCAATG	4 cut(s)	214, 1015, 1019, 1160
BseDI	CCNNGG	2 cut(s)	498, 1263
BseGI	GGATG	5 cut(s)	457, 508, 531, 654, 1273
BseLI	CCNNNNNNNGG	2 cut(s)	184, 826
BseMI	GCAATG	4 cut(s)	214, 1015, 1019, 1160
BseRI	GAGGAG	1 cut(s)	238
BseXI	GCAGC	7 cut(s)	204, 505, 517, 604, 638, 799, 1030
BseYI	CCCAGC	3 cut(s)	521, 595, 1254
BsgI	GTGCAG	1 cut(s)	203
Bsh1236I	CGCG	2 cut(s)	192, 273
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	5 cut(s)	97, 488, 557, 708, 739
BshNI	GGYRCC	2 cut(s)	429, 494
BsiEI	CGRYCG	1 cut(s)	231
BsiHKAI	GWGCWC	2 cut(s)	287, 1018
BsiHKCI	CYCGRG	1 cut(s)	509
BsiSI	CCGG	5 cut(s)	142, 201, 239, 549, 554
BslI	CCNNNNNNNGG	2 cut(s)	184, 826
BsnI	GGCC	5 cut(s)	97, 488, 557, 708, 739
BsoBI	CYCGRG	1 cut(s)	509
Bsp1286I	GDGCHC	3 cut(s)	287, 1018, 1196
Bsp1407I	TGTACA	1 cut(s)	1242
Bsp143I	GATC	2 cut(s)	187, 866
BspACI	CCGC	5 cut(s)	98, 121, 192, 198, 693
BspANI	GGCC	5 cut(s)	97, 488, 557, 708, 739
BspFNI	CGCG	2 cut(s)	192, 273
BspLI	GGNNCC	4 cut(s)	7, 196, 431, 496
BspOI	GCTAGC	2 cut(s)	464, 683
BspPI	GGATC	2 cut(s)	195, 874
BspT107I	GGYRCC	2 cut(s)	429, 494
BspTI	CTTAAG	1 cut(s)	824
BsrDI	GCAATG	4 cut(s)	214, 1015, 1019, 1160
BsrFI	RCCGGY	2 cut(s)	141, 553
BsrGI	TGTACA	1 cut(s)	1242
BssAI	RCCGGY	2 cut(s)	141, 553
BssECI	CCNNGG	2 cut(s)	498, 1263
BssMI	GATC	2 cut(s)	187, 866
BssNI	GRCGYC	2 cut(s)	17, 124
BssT1I	CCWWGG	2 cut(s)	498, 1263
Bst4CI	ACNGT	6 cut(s)	171, 298, 420, 429, 434, 965
BstACI	GRCGYC	2 cut(s)	17, 124
BstAFI	CTTAAG	1 cut(s)	824
BstAUI	TGTACA	1 cut(s)	1242
BstC8I	GCNNGC	6 cut(s)	222, 336, 462, 681, 691, 1260
BstF5I	GGATG	5 cut(s)	457, 508, 531, 654, 1273
BstFNI	CGCG	2 cut(s)	192, 273
BstH2I	RGCGCY	1 cut(s)	680
BstHHI	GCGC	3 cut(s)	65, 207, 679
BstKTI	GATC	2 cut(s)	190, 869
BstMBI	GATC	2 cut(s)	187, 866
BstMCI	CGRYCG	1 cut(s)	231
BstSCI	CCNGG	3 cut(s)	200, 237, 547
BstSFI	CTRYAG	1 cut(s)	666
BstUI	CGCG	2 cut(s)	192, 273
BstV1I	GCAGC	7 cut(s)	204, 505, 517, 604, 638, 799, 1030
BstV2I	GAAGAC	1 cut(s)	316
BstX2I	RGATCY	1 cut(s)	866
BstYI	RGATCY	1 cut(s)	866
BsuRI	GGCC	5 cut(s)	97, 488, 557, 708, 739
BtsCI	GGATG	5 cut(s)	457, 508, 531, 654, 1273
BtsIMutI	CAGTG	1 cut(s)	1134
Cac8I	GCNNGC	6 cut(s)	222, 336, 462, 681, 691, 1260
CfoI	GCGC	3 cut(s)	65, 207, 679
Cfr10I	RCCGGY	2 cut(s)	141, 553
Cfr13I	GGNCC	2 cut(s)	194, 551
CpoI	CGGWCCG	1 cut(s)	551
CseI	GACGC	3 cut(s)	6, 113, 262
Csp6I	GTAC	4 cut(s)	421, 430, 890, 1243
CspI	CGGWCCG	1 cut(s)	551
CviAII	CATG	2 cut(s)	349, 541
CviQI	GTAC	4 cut(s)	421, 430, 890, 1243
DpnI	GATC	2 cut(s)	189, 868
DpnII	GATC	2 cut(s)	187, 866
EaeI	YGGCCR	3 cut(s)	486, 555, 706
Ecl136II	GAGCTC	2 cut(s)	285, 1016
Eco130I	CCWWGG	2 cut(s)	498, 1263
Eco24I	GRGCYC	3 cut(s)	287, 1018, 1196
Eco47I	GGWCC	2 cut(s)	194, 551
Eco47III	AGCGCT	1 cut(s)	678
Eco53kI	GAGCTC	2 cut(s)	285, 1016
Eco88I	CYCGRG	1 cut(s)	509
EcoICRI	GAGCTC	2 cut(s)	285, 1016
EcoT14I	CCWWGG	2 cut(s)	498, 1263
EcoT38I	GRGCYC	3 cut(s)	287, 1018, 1196
ErhI	CCWWGG	2 cut(s)	498, 1263
FaeI	CATG	2 cut(s)	352, 544
FatI	CATG	2 cut(s)	348, 540
FauI	CCCGC	2 cut(s)	205, 686
FblI	GTMKAC	1 cut(s)	260
Fnu4HI	GCNGC	9 cut(s)	98, 122, 218, 519, 531, 593, 652, 813, 1044
FokI	GGATG	5 cut(s)	464, 515, 538, 641, 1280
FriOI	GRGCYC	3 cut(s)	287, 1018, 1196
Fsp4HI	GCNGC	9 cut(s)	98, 122, 218, 519, 531, 593, 652, 813, 1044
FspBI	CTAG	2 cut(s)	461, 680
GlaI	GCGC	3 cut(s)	64, 206, 678
GluI	GCNGC	9 cut(s)	98, 122, 218, 519, 531, 593, 652, 813, 1044
GsaI	CCCAGC	3 cut(s)	525, 599, 1258
GsuI	CTGGAG	1 cut(s)	741
HaeII	RGCGCY	1 cut(s)	680
HaeIII	GGCC	5 cut(s)	97, 488, 557, 708, 739
HapII	CCGG	5 cut(s)	142, 201, 239, 549, 554
HgaI	GACGC	3 cut(s)	6, 113, 262
HhaI	GCGC	3 cut(s)	65, 207, 679
Hin1I	GRCGYC	2 cut(s)	17, 124
Hin1II	CATG	2 cut(s)	352, 544
Hin6I	GCGC	3 cut(s)	63, 205, 677
HinP1I	GCGC	3 cut(s)	63, 205, 677
HincII	GTYRAC	3 cut(s)	261, 294, 856
HindII	GTYRAC	3 cut(s)	261, 294, 856
HinfI	GANTC	2 cut(s)	571, 701
HpaII	CCGG	5 cut(s)	142, 201, 239, 549, 554
HphI	GGTGA	2 cut(s)	131, 457
Hpy166II	GTNNAC	4 cut(s)	261, 294, 820, 856
Hpy188I	TCNGA	6 cut(s)	117, 187, 576, 642, 700, 981
Hpy188III	TCNNGA	2 cut(s)	720, 1138
Hpy8I	GTNNAC	4 cut(s)	261, 294, 820, 856
Hpy99I	CGWCG	5 cut(s)	22, 138, 262, 278, 314
HpyAV	CCTTC	4 cut(s)	54, 397, 476, 1166
HpyCH4III	ACNGT	6 cut(s)	171, 298, 420, 429, 434, 965
HpyCH4IV	ACGT	1 cut(s)	1077
HpyCH4V	TGCA	9 cut(s)	220, 636, 654, 779, 872, 998, 1008, 1184, 1217
HpySE526I	ACGT	1 cut(s)	1077
Hsp92I	GRCGYC	2 cut(s)	17, 124
Hsp92II	CATG	2 cut(s)	352, 544
HspAI	GCGC	3 cut(s)	63, 205, 677
KpnI	GGTACC	1 cut(s)	433
Kzo9I	GATC	2 cut(s)	187, 866
LmnI	GCTCC	6 cut(s)	290, 481, 989, 1013, 1021, 1029
Lsp1109I	GCAGC	7 cut(s)	204, 505, 517, 604, 638, 799, 1030
LweI	GCATC	6 cut(s)	493, 623, 663, 702, 799, 1007
MaeI	CTAG	2 cut(s)	461, 680
MaeII	ACGT	1 cut(s)	1077
MaeIII	GTNAC	2 cut(s)	137, 445
MalI	GATC	2 cut(s)	189, 868
MboI	GATC	2 cut(s)	187, 866
MboII	GAAGA	6 cut(s)	95, 316, 364, 597, 1083, 1098
MflI	RGATCY	1 cut(s)	866
MhlI	GDGCHC	3 cut(s)	287, 1018, 1196
MlsI	TGGCCA	2 cut(s)	488, 708
MluCI	AATT	5 cut(s)	377, 794, 1218, 1278, 1282
MluI	ACGCGT	1 cut(s)	271
MluNI	TGGCCA	2 cut(s)	488, 708
MlyI	GAGTC	1 cut(s)	580
Mox20I	TGGCCA	2 cut(s)	488, 708
MscI	TGGCCA	2 cut(s)	488, 708
MseI	TTAA	2 cut(s)	825, 1281
Msp20I	TGGCCA	2 cut(s)	488, 708
MspA1I	CMGCKG	1 cut(s)	595
MspCI	CTTAAG	1 cut(s)	824
MspI	CCGG	5 cut(s)	142, 201, 239, 549, 554
MspR9I	CCNGG	3 cut(s)	202, 239, 549
MvnI	CGCG	2 cut(s)	192, 273
NciI	CCSGG	3 cut(s)	202, 239, 549
NdeII	GATC	2 cut(s)	187, 866
NheI	GCTAGC	2 cut(s)	460, 679
NlaIII	CATG	2 cut(s)	352, 544
NlaIV	GGNNCC	4 cut(s)	7, 196, 431, 496
NmuCI	GTSAC	2 cut(s)	137, 445
PfeI	GAWTC	1 cut(s)	701
PfoI	TCCNGGA	1 cut(s)	547
PkrI	GCNGC	9 cut(s)	99, 123, 219, 520, 532, 594, 653, 814, 1045
PleI	GAGTC	1 cut(s)	579
PpsI	GAGTC	1 cut(s)	579
PshBI	ATTAAT	1 cut(s)	1281
PsiI	TTATAA	1 cut(s)	785
Psp124BI	GAGCTC	2 cut(s)	287, 1018
PspFI	CCCAGC	3 cut(s)	521, 595, 1254
PspN4I	GGNNCC	4 cut(s)	7, 196, 431, 496
PspPI	GGNCC	2 cut(s)	194, 551
PsuI	RGATCY	1 cut(s)	866
PvuII	CAGCTG	1 cut(s)	595
RsaI	GTAC	4 cut(s)	422, 431, 891, 1244
RsaNI	GTAC	4 cut(s)	421, 430, 890, 1243
Rsr2I	CGGWCCG	1 cut(s)	551
RsrII	CGGWCCG	1 cut(s)	551
SacI	GAGCTC	2 cut(s)	287, 1018
SalI	GTCGAC	1 cut(s)	259
SaqAI	TTAA	2 cut(s)	825, 1281
SatI	GCNGC	9 cut(s)	98, 122, 218, 519, 531, 593, 652, 813, 1044
Sau3AI	GATC	2 cut(s)	187, 866
Sau96I	GGNCC	2 cut(s)	194, 551
SchI	GAGTC	1 cut(s)	580
ScrFI	CCNGG	3 cut(s)	202, 239, 549
SduI	GDGCHC	3 cut(s)	287, 1018, 1196
SfaNI	GCATC	6 cut(s)	493, 623, 663, 702, 799, 1007
SfcI	CTRYAG	1 cut(s)	666
SinI	GGWCC	2 cut(s)	194, 551
SmlI	CTYRAG	2 cut(s)	91, 824
SmoI	CTYRAG	2 cut(s)	91, 824
Sse9I	AATT	5 cut(s)	377, 794, 1218, 1278, 1282
SsiI	CCGC	5 cut(s)	98, 121, 192, 198, 693
SspI	AATATT	1 cut(s)	985
SspMI	CTAG	2 cut(s)	461, 680
SstI	GAGCTC	2 cut(s)	287, 1018
StyD4I	CCNGG	3 cut(s)	200, 237, 547
StyI	CCWWGG	2 cut(s)	498, 1263
TaaI	ACNGT	6 cut(s)	171, 298, 420, 429, 434, 965
TaiI	ACGT	1 cut(s)	1080
TaqI	TCGA	2 cut(s)	260, 1139
TaqII	GACCGA	1 cut(s)	217
TasI	AATT	5 cut(s)	377, 794, 1218, 1278, 1282
TatI	WGTACW	2 cut(s)	889, 1242
TauI	GCSGC	2 cut(s)	100, 124
TfiI	GAWTC	1 cut(s)	701
Tru1I	TTAA	2 cut(s)	825, 1281
Tru9I	TTAA	2 cut(s)	825, 1281
TscAI	CASTG	1 cut(s)	1134
TseFI	GTSAC	2 cut(s)	137, 445
TseI	GCWGC	7 cut(s)	217, 518, 530, 592, 651, 812, 1043
Tsp45I	GTSAC	2 cut(s)	137, 445
TspDTI	ATGAA	4 cut(s)	101, 365, 468, 1088
TspGWI	ACGGA	3 cut(s)	246, 464, 468
TspRI	CASTG	1 cut(s)	1134
Vha464I	CTTAAG	1 cut(s)	824
VpaK11BI	GGWCC	2 cut(s)	194, 551
VspI	ATTAAT	1 cut(s)	1281
XapI	RAATTY	1 cut(s)	794
XcmI	CCANNNNNNNNNTGG	3 cut(s)	56, 496, 716
XmiI	GTMKAC	1 cut(s)	260
XspI	CTAG	2 cut(s)	461, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.