FvH4_5g37950

Belongs to the glycosyl hydrolase 5 (cellulase A) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
27994393 .. 27997673
3281 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g37950.t1

Sequence Viewer

Length: 1527 bp
ATGGCTTTCAACTCAAGGACATGGCCACTATGCTTGATGCTGATTTCTTGCATGATCTCTATTTCTTGTGGAAGAAAAATGACTCAAACTTCTACTCGAGTAAAAGCAGTTAATCTCGGAGGTTGGCTAGTTACCGAAGGCTGGATCAAACCTTCTCTTTTCGACGGCATTCCCAACAAGGACTTCTTGGATGGTACTGGCCTTCAGTTCAAATCAGTCACAACTGGGAAATTTCTTTCCTCTGAGAATGGAGGAGGAAGCATCATAGTTGCAAACAGAACCGCAGCTTCAGGCTGGGAAACATTCAAATTGTGGAGGATCAATGAGACCACATTTAACTTCAGGGTTTTCGGCAAACAATTTGTGGGGATTGATGGAAATGGGAAAGATGTGGTGGCTGTTGCTAGCTCGCCGGGTGTATCCGAAACATTCGAAATCATAAGAAAACCAGATGATTCAAGCAGGGTACGGATCAAAGCAACCAATGGATTCTTCTTGCAGGCGAAGACAGAGGATATGGTTACAGCTGATTATGCAGAGAGTAGCAGTGGATGGGGAGACAATGATCCTTCTGTTTTTGTGATTACCTTCTCTGGAAGATTGCAGGGGGAGTTTCAAGTAACAAATGGCTATGGTAAATTGGCTCCTCAAGTTATGAAGGAGCACTGGAGCACATTCATTGTTGAAGAAGACTTTAACTTCATATCAAAAAATGGATTAGACGCAGTGAGAATACCAGTTGGGTGGTGGATATCAAGCGACCCAAACCCTCCACACCCTTATGTTGGGGGTTCCTTGAAAGCCTTGGACAATGCCTTTCTGTGGTCCAAGAAATATGGATTGAAGGTAATAATTGACCTGCATGCAGCACCAGGATCTCAAAATGGTTTTGAACACAGTGCTTCAAGAGATGGATCTCAGGAATGGGGTCAAACCGATGCCAACATACAGCAGACAGTTGATGTCATCGAGTTCTTGACCGCAAGGTATGCAAAGAATCCAAGCCTATACGCAGTTGAGCTCATCAACGAGCCATTCTCCCCAGGAACTTCTCTGCAGAACGTGACCACATATTACAAGGCCGGTTATGCTGCGGTGCGCAAGCACTCTTCGACAGCGTTCGTGGTGTTCTCAAACAGACTAGGTCCAATGGAACCAACTGAGCTTTTCCCTGTTGCCAGTGGCTTGAAGAGAGTCGTCATCGATGTCCATTACTACAACCTCTTTGTGAGTGCTTTCGACAATTTGACTGTCCAGCAGAATATCGACTTCATCTACACTAATCGGACTACGGATTTGAATACTGTTACCACTTCCAATGGCCCTCTCACTTTTGTTGGTGAATGGGTAGCTGAATGGAATGTGCAAGATGCAACAAAGGAGGATTACCAAAGATTTGCCAAGGCTCAGTTAGAAGTTTGGGGGCGAGCAACATTTGGGTGGGCTTATTGGACTCTTAGGAACGTGAATAACCATTGGAGTCTTGAGTGGATGATAAAGAATGGTTACATCAACCTGCTAACTTGA

Protein Analysis

509

Amino Acids

56.7

Weight (kDa)

6.22

Isoelectric Point (pI)

30.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7910 PF25490 59 - 196 2.3e-61 Domain of unknown function (DUF7910)
Cellulase PF00150 219 - 488 4.9e-21 Cellulase (glycosyl hydrolase family 5)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1100
Acc36I ACCTGC 1 cut(s) 867
AciI CCGC 3 cut(s) 282, 981, 1094
AclWI GGATC 6 cut(s) 152, 326, 479, 560, 883, 922
AcoI YGGCCR 1 cut(s) 23
AcsI RAATTY 1 cut(s) 230
AcuI CTGAAG 3 cut(s) 188, 273, 325
AfaI GTAC 2 cut(s) 196, 468
AfiI CCNNNNNNNGG 3 cut(s) 141, 785, 822
AjnI CCWGG 2 cut(s) 871, 1042
AjuI GAANNNNNNNTTGG 4 cut(s) 167, 199, 476, 508
AluBI AGCT 6 cut(s) 287, 408, 527, 1021, 1165, 1352
AluI AGCT 6 cut(s) 287, 408, 527, 1021, 1165, 1352
Alw21I GWGCWC 3 cut(s) 666, 674, 1023
Alw26I GTCTC 2 cut(s) 320, 552
AlwI GGATC 6 cut(s) 152, 326, 479, 560, 883, 922
Ama87I CYCGRG 1 cut(s) 96
AoxI GGCC 4 cut(s) 23, 199, 1080, 1321
ApeKI GCWGC 3 cut(s) 284, 866, 1091
ApoI RAATTY 1 cut(s) 230
ArsI GACNNNNNNTTYG 2 cut(s) 1279, 1311
AspLEI GCGC 1 cut(s) 1101
AspS9I GGNCC 3 cut(s) 825, 1145, 1322
AsuC2I CCSGG 1 cut(s) 414
AsuHPI GGTGA 1 cut(s) 1352
AsuII TTCGAA 1 cut(s) 432
AsuNHI GCTAGC 1 cut(s) 404
AvaI CYCGRG 1 cut(s) 96
AvaII GGWCC 2 cut(s) 825, 1145
BalI TGGCCA 1 cut(s) 25
BanII GRGCYC 1 cut(s) 1023
BbsI GAAGAC 2 cut(s) 512, 696
Bbv12I GWGCWC 3 cut(s) 666, 674, 1023
BbvI GCAGC 3 cut(s) 296, 878, 1078
BccI CCATC 4 cut(s) 185, 368, 546, 905
BceAI ACGGC 1 cut(s) 181
BciT130I CCWGG 2 cut(s) 873, 1044
BciVI GTATCC 1 cut(s) 430
BcnI CCSGG 1 cut(s) 414
BcoDI GTCTC 2 cut(s) 320, 552
BfaI CTAG 3 cut(s) 128, 405, 1142
BfmI CTRYAG 1 cut(s) 1055
BfuAI ACCTGC 1 cut(s) 867
BfuI GTATCC 1 cut(s) 430
BisI GCNGC 3 cut(s) 285, 867, 1092
BlsI GCNGC 3 cut(s) 286, 868, 1093
Bme1390I CCNGG 3 cut(s) 414, 873, 1044
Bme18I GGWCC 2 cut(s) 825, 1145
BmeT110I CYCGRG 1 cut(s) 96
BmgT120I GGNCC 3 cut(s) 825, 1145, 1322
BmiI GGNNCC 3 cut(s) 645, 793, 1155
BmrFI CCNGG 3 cut(s) 414, 873, 1044
BmrI ACTGGG 1 cut(s) 234
BmsI GCATC 4 cut(s) 27, 270, 928, 1360
BmtI GCTAGC 1 cut(s) 408
BmuI ACTGGG 1 cut(s) 234
BpiI GAAGAC 2 cut(s) 512, 696
BplI GAGNNNNNCTC 2 cut(s) 1022, 1054
BpmI CTGGAG 1 cut(s) 688
Bpu14I TTCGAA 1 cut(s) 432
BpuEI CTTGAG 2 cut(s) 633, 1505
BpuMI CCSGG 1 cut(s) 414
Bsa29I ATCGAT 1 cut(s) 1203
BsaI GGTCTC 1 cut(s) 320
BsaJI CCNNGG 3 cut(s) 804, 1042, 1401
Bsc4I CCNNNNNNNGG 3 cut(s) 141, 785, 822
Bse118I RCCGGY 1 cut(s) 1082
Bse1I ACTGG 5 cut(s) 202, 229, 671, 737, 1179
BseBI CCWGG 2 cut(s) 873, 1044
BseCI ATCGAT 1 cut(s) 1203
BseDI CCNNGG 3 cut(s) 804, 1042, 1401
BseGI GGATG 3 cut(s) 196, 557, 1497
BseLI CCNNNNNNNGG 3 cut(s) 141, 785, 822
BseMII CTCAG 4 cut(s) 234, 932, 1152, 1421
BseNI ACTGG 5 cut(s) 202, 229, 671, 737, 1179
BseRI GAGGAG 2 cut(s) 267, 636
BseXI GCAGC 3 cut(s) 296, 878, 1078
BseYI CCCAGC 1 cut(s) 294
BshFI GGCC 4 cut(s) 25, 201, 1082, 1323
BshVI ATCGAT 1 cut(s) 1203
BsiHKAI GWGCWC 3 cut(s) 666, 674, 1023
BsiHKCI CYCGRG 1 cut(s) 96
BsiSI CCGG 2 cut(s) 413, 1083
BslI CCNNNNNNNGG 3 cut(s) 141, 785, 822
BsmAI GTCTC 2 cut(s) 320, 552
BsmI GAATGC 1 cut(s) 168
BsnI GGCC 4 cut(s) 25, 201, 1082, 1323
Bso31I GGTCTC 1 cut(s) 320
BsoBI CYCGRG 1 cut(s) 96
Bsp119I TTCGAA 1 cut(s) 432
Bsp1286I GDGCHC 3 cut(s) 666, 674, 1023
Bsp143I GATC 7 cut(s) 54, 144, 318, 471, 565, 875, 914
BspACI CCGC 3 cut(s) 282, 981, 1094
BspANI GGCC 4 cut(s) 25, 201, 1082, 1323
BspCNI CTCAG 4 cut(s) 235, 931, 1153, 1420
BspDI ATCGAT 1 cut(s) 1203
BspLI GGNNCC 3 cut(s) 645, 793, 1155
BspMAI CTGCAG 1 cut(s) 1059
BspMI ACCTGC 1 cut(s) 867
BspOI GCTAGC 1 cut(s) 408
BspPI GGATC 6 cut(s) 152, 326, 479, 560, 883, 922
BspT104I TTCGAA 1 cut(s) 432
BspTNI GGTCTC 1 cut(s) 320
BsrFI RCCGGY 1 cut(s) 1082
BsrI ACTGG 5 cut(s) 202, 229, 671, 737, 1179
BssAI RCCGGY 1 cut(s) 1082
BssECI CCNNGG 3 cut(s) 804, 1042, 1401
BssMI GATC 7 cut(s) 54, 144, 318, 471, 565, 875, 914
BssT1I CCWWGG 2 cut(s) 804, 1401
Bst2UI CCWGG 2 cut(s) 873, 1044
Bst4CI ACNGT 4 cut(s) 899, 958, 1252, 1306
Bst6I CTCTTC 2 cut(s) 1114, 1184
BstAPI GCANNNNNTGC 1 cut(s) 989
BstBI TTCGAA 1 cut(s) 432
BstC8I GCNNGC 6 cut(s) 406, 410, 501, 864, 1103, 1428
BstDEI CTNAG 5 cut(s) 243, 918, 1161, 1407, 1457
BstF5I GGATG 3 cut(s) 196, 557, 1497
BstHHI GCGC 1 cut(s) 1101
BstKTI GATC 7 cut(s) 57, 147, 321, 474, 568, 878, 917
BstMAI GTCTC 2 cut(s) 320, 552
BstMBI GATC 7 cut(s) 54, 144, 318, 471, 565, 875, 914
BstMWI GCNNNNNNNGC 3 cut(s) 533, 989, 1088
BstNI CCWGG 2 cut(s) 873, 1044
BstNSI RCATGY 1 cut(s) 866
BstSCI CCNGG 3 cut(s) 412, 871, 1042
BstSFI CTRYAG 1 cut(s) 1055
BstV1I GCAGC 3 cut(s) 296, 878, 1078
BstV2I GAAGAC 2 cut(s) 512, 696
BstX2I RGATCY 2 cut(s) 875, 914
BstXI CCANNNNNNTGG 1 cut(s) 744
BstYI RGATCY 2 cut(s) 875, 914
Bsu15I ATCGAT 1 cut(s) 1203
BsuI GTATCC 1 cut(s) 430
BsuRI GGCC 4 cut(s) 25, 201, 1082, 1323
BsuTUI ATCGAT 1 cut(s) 1203
BtsCI GGATG 3 cut(s) 196, 557, 1497
BtsI GCAGTG 2 cut(s) 553, 732
BtsIMutI CAGTG 5 cut(s) 553, 664, 732, 904, 1186
BveI ACCTGC 1 cut(s) 867
Cac8I GCNNGC 6 cut(s) 406, 410, 501, 864, 1103, 1428
CfoI GCGC 1 cut(s) 1101
Cfr10I RCCGGY 1 cut(s) 1082
Cfr13I GGNCC 3 cut(s) 825, 1145, 1322
ClaI ATCGAT 1 cut(s) 1203
CseI GACGC 1 cut(s) 731
Csp6I GTAC 2 cut(s) 195, 467
CspCI CAANNNNNGTGG 2 cut(s) 15, 50
CviAII CATG 3 cut(s) 21, 52, 863
CviQI GTAC 2 cut(s) 195, 467
DdeI CTNAG 5 cut(s) 243, 918, 1161, 1407, 1457
DpnI GATC 7 cut(s) 56, 146, 320, 473, 567, 877, 916
DpnII GATC 7 cut(s) 54, 144, 318, 471, 565, 875, 914
EaeI YGGCCR 1 cut(s) 23
Eam1104I CTCTTC 2 cut(s) 1114, 1184
EarI CTCTTC 2 cut(s) 1114, 1184
Ecl136II GAGCTC 1 cut(s) 1021
Eco130I CCWWGG 2 cut(s) 804, 1401
Eco24I GRGCYC 1 cut(s) 1023
Eco31I GGTCTC 1 cut(s) 320
Eco32I GATATC 1 cut(s) 753
Eco47I GGWCC 2 cut(s) 825, 1145
Eco53kI GAGCTC 1 cut(s) 1021
Eco57I CTGAAG 3 cut(s) 188, 273, 325
Eco88I CYCGRG 1 cut(s) 96
EcoICRI GAGCTC 1 cut(s) 1021
EcoRII CCWGG 2 cut(s) 871, 1042
EcoRV GATATC 1 cut(s) 753
EcoT14I CCWWGG 2 cut(s) 804, 1401
EcoT38I GRGCYC 1 cut(s) 1023
ErhI CCWWGG 2 cut(s) 804, 1401
FaeI CATG 3 cut(s) 24, 55, 866
FalI AAGNNNNNCTT 2 cut(s) 170, 202
FatI CATG 3 cut(s) 20, 51, 862
Fnu4HI GCNGC 3 cut(s) 285, 867, 1092
FokI GGATG 3 cut(s) 203, 564, 1504
FriOI GRGCYC 1 cut(s) 1023
Fsp4HI GCNGC 3 cut(s) 285, 867, 1092
FspBI CTAG 3 cut(s) 128, 405, 1142
FspI TGCGCA 1 cut(s) 1100
GlaI GCGC 1 cut(s) 1100
GluI GCNGC 3 cut(s) 285, 867, 1092
GsaI CCCAGC 1 cut(s) 298
GsuI CTGGAG 1 cut(s) 688
HaeIII GGCC 4 cut(s) 25, 201, 1082, 1323
HapII CCGG 2 cut(s) 413, 1083
HgaI GACGC 1 cut(s) 731
HhaI GCGC 1 cut(s) 1101
Hin1II CATG 3 cut(s) 24, 55, 866
Hin6I GCGC 1 cut(s) 1099
HinP1I GCGC 1 cut(s) 1099
HinfI GANTC 7 cut(s) 82, 455, 489, 997, 1194, 1453, 1480
HpaII CCGG 2 cut(s) 413, 1083
HphI GGTGA 1 cut(s) 1352
Hpy188I TCNGA 4 cut(s) 119, 244, 424, 1287
Hpy188III TCNNGA 5 cut(s) 594, 906, 920, 976, 1484
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 7 cut(s) 131, 162, 212, 579, 598, 652, 838
HpyCH4III ACNGT 4 cut(s) 899, 958, 1252, 1306
HpyCH4IV ACGT 2 cut(s) 1062, 1464
HpyF10VI GCNNNNNNNGC 3 cut(s) 533, 989, 1088
HpyF3I CTNAG 5 cut(s) 243, 918, 1161, 1407, 1457
HpySE526I ACGT 2 cut(s) 1062, 1464
Hsp92II CATG 3 cut(s) 24, 55, 866
HspAI GCGC 1 cut(s) 1099
Kzo9I GATC 7 cut(s) 54, 144, 318, 471, 565, 875, 914
LmnI GCTCC 3 cut(s) 649, 661, 669
Lsp1109I GCAGC 3 cut(s) 296, 878, 1078
LweI GCATC 4 cut(s) 27, 270, 928, 1360
MaeI CTAG 3 cut(s) 128, 405, 1142
MaeII ACGT 2 cut(s) 1062, 1464
MaeIII GTNAC 7 cut(s) 130, 217, 520, 619, 1063, 1306, 1505
MalI GATC 7 cut(s) 56, 146, 320, 473, 567, 877, 916
MboI GATC 7 cut(s) 54, 144, 318, 471, 565, 875, 914
MboII GAAGA 8 cut(s) 84, 484, 517, 609, 698, 701, 1101, 1201
MflI RGATCY 2 cut(s) 875, 914
MhlI GDGCHC 3 cut(s) 666, 674, 1023
MlsI TGGCCA 1 cut(s) 25
MluCI AATT 6 cut(s) 230, 308, 359, 638, 852, 1243
MluNI TGGCCA 1 cut(s) 25
MlyI GAGTC 4 cut(s) 76, 1203, 1447, 1489
Mox20I TGGCCA 1 cut(s) 25
MscI TGGCCA 1 cut(s) 25
MseI TTAA 3 cut(s) 111, 336, 696
MslI CAYNNNNRTG 2 cut(s) 780, 1438
Msp20I TGGCCA 1 cut(s) 25
MspA1I CMGCKG 1 cut(s) 527
MspI CCGG 2 cut(s) 413, 1083
MspR9I CCNGG 3 cut(s) 414, 873, 1044
Mva1269I GAATGC 1 cut(s) 168
MvaI CCWGG 2 cut(s) 873, 1044
MwoI GCNNNNNNNGC 3 cut(s) 533, 989, 1088
NciI CCSGG 1 cut(s) 414
NdeII GATC 7 cut(s) 54, 144, 318, 471, 565, 875, 914
NheI GCTAGC 1 cut(s) 404
NlaIII CATG 3 cut(s) 24, 55, 866
NlaIV GGNNCC 3 cut(s) 645, 793, 1155
NmuCI GTSAC 2 cut(s) 217, 1063
NsbI TGCGCA 1 cut(s) 1100
NspI RCATGY 1 cut(s) 866
NspV TTCGAA 1 cut(s) 432
PaeI GCATGC 1 cut(s) 866
PaeR7I CTCGAG 1 cut(s) 96
PctI GAATGC 1 cut(s) 168
PfeI GAWTC 3 cut(s) 455, 489, 997
PflFI GACNNNGTC 1 cut(s) 1143
PkrI GCNGC 3 cut(s) 286, 868, 1093
PleI GAGTC 4 cut(s) 76, 1202, 1447, 1488
PpsI GAGTC 4 cut(s) 76, 1202, 1447, 1488
Psp124BI GAGCTC 1 cut(s) 1023
Psp6I CCWGG 2 cut(s) 871, 1042
PspFI CCCAGC 1 cut(s) 294
PspGI CCWGG 2 cut(s) 871, 1042
PspN4I GGNNCC 3 cut(s) 645, 793, 1155
PspPI GGNCC 3 cut(s) 825, 1145, 1322
PspXI VCTCGAGB 1 cut(s) 96
PstI CTGCAG 1 cut(s) 1059
PsuI RGATCY 2 cut(s) 875, 914
PsyI GACNNNGTC 1 cut(s) 1143
PvuII CAGCTG 1 cut(s) 527
RsaI GTAC 2 cut(s) 196, 468
RsaNI GTAC 2 cut(s) 195, 467
RseI CAYNNNNRTG 2 cut(s) 780, 1438
SacI GAGCTC 1 cut(s) 1023
SaqAI TTAA 3 cut(s) 111, 336, 696
SatI GCNGC 3 cut(s) 285, 867, 1092
Sau3AI GATC 7 cut(s) 54, 144, 318, 471, 565, 875, 914
Sau96I GGNCC 3 cut(s) 825, 1145, 1322
SchI GAGTC 4 cut(s) 76, 1203, 1447, 1489
ScrFI CCNGG 3 cut(s) 414, 873, 1044
SduI GDGCHC 3 cut(s) 666, 674, 1023
SfaNI GCATC 4 cut(s) 27, 270, 928, 1360
SfcI CTRYAG 1 cut(s) 1055
Sfr274I CTCGAG 1 cut(s) 96
SfuI TTCGAA 1 cut(s) 432
SinI GGWCC 2 cut(s) 825, 1145
SlaI CTCGAG 1 cut(s) 96
SmiMI CAYNNNNRTG 2 cut(s) 780, 1438
SmlI CTYRAG 4 cut(s) 13, 96, 648, 1484
SmoI CTYRAG 4 cut(s) 13, 96, 648, 1484
SphI GCATGC 1 cut(s) 866
Sse9I AATT 6 cut(s) 230, 308, 359, 638, 852, 1243
SsiI CCGC 3 cut(s) 282, 981, 1094
SspMI CTAG 3 cut(s) 128, 405, 1142
SstI GAGCTC 1 cut(s) 1023
StyD4I CCNGG 3 cut(s) 412, 871, 1042
StyI CCWWGG 2 cut(s) 804, 1401
TaaI ACNGT 4 cut(s) 899, 958, 1252, 1306
TaiI ACGT 2 cut(s) 1065, 1467
TaqI TCGA 8 cut(s) 97, 162, 432, 969, 1112, 1203, 1239, 1266
TasI AATT 6 cut(s) 230, 308, 359, 638, 852, 1243
TfiI GAWTC 3 cut(s) 455, 489, 997
Tru1I TTAA 3 cut(s) 111, 336, 696
Tru9I TTAA 3 cut(s) 111, 336, 696
TscAI CASTG 5 cut(s) 553, 671, 732, 904, 1186
TseFI GTSAC 2 cut(s) 217, 1063
TseI GCWGC 3 cut(s) 284, 866, 1091
Tsp45I GTSAC 2 cut(s) 217, 1063
TspDTI ATGAA 4 cut(s) 667, 671, 691, 1261
TspGWI ACGGA 2 cut(s) 484, 1307
TspRI CASTG 5 cut(s) 553, 671, 732, 904, 1186
Tth111I GACNNNGTC 1 cut(s) 1143
VpaK11BI GGWCC 2 cut(s) 825, 1145
XapI RAATTY 1 cut(s) 230
XceI RCATGY 1 cut(s) 866
XcmI CCANNNNNNNNNTGG 1 cut(s) 744
XhoI CTCGAG 1 cut(s) 96
XspI CTAG 3 cut(s) 128, 405, 1142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.