pycom08g15290

Belongs to the glycosyl hydrolase 5 (cellulase A) family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Reverse (-)
14926038 .. 14929619
3582 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g15290.7

Sequence Viewer

Length: 1473 bp
ATGCAACAACAATACAAAGCAAAGCATAAACGAATGGCTTTCAACTCCAGGGCATGGCTCCTAAGCATAGGGCTCCTTTTTTGTATGCTGTCCATTTCTTCTGGGAGAATGCCTCAGAATTCCGGTCGAGTGAAAGCAGTTAATCTTGGAGGGTGGCTGGTTACAGAAGGCTGGATTAAACCTTCTCTTTTCGATGGCATTCCCAACAAGGATTTCTTGGATGGAACTGGACTTCAGTTTAAATCTGTCACAACTGGGAAATATCTTGCGGCTGAGTTGGGAGGAGGAAGCATCATAGTTGCAAACAGAACGTCACCTTCAGGCTGGGAAACATTTAAATTGTGGAGGATCAACGAAACCACGTTTAATTTCAGGGTCTTCAACAAAGATTTTTTGGGGCTTGATGTCAATGGCAATGGAACTCAGGTGGTAGCTGTTTCGAAAATACCGGGTAGTTCGGAGACGTTTGAAATCATAAGAAAACCTGATGATTTGCGCCGGGTTCGAATCAAAGCACCGAATGGATTCTTCTTGCAGGCAAGATCAGAGGTGCTGGTGACAGCTGATTATGCGAGGAGTACTGAATGGGGAAACAATGATCCATCTGTTTTTGTGATAACATTTTCTGGAAAATTGGAAGGAGAGTTTCAAGTAACCAATGGTTATGGTCCAAACATGGCTCCACAAGTTATGTGGCTGACTTTATTGGTTTTGTTTTTAAGAAATCTTTTTATAATACATACATGTTTGTATTTTGGCAGGAAATATGGATTAAAGGTAATAATTGATCTCCATGCAGCACCAGGCTCTCAAAATGGTTATGAACACAGTGCTTCCAGAGATGGCTCTCAGGAATGGGGACAAACAGATGAGAACATACAACAGACTGTTCATGTCATTGATTTCTTAACCTCCAGGTATGCTAAGAGCCCAAACCTATATGCAGTTGAGCTCATCAACGAACCTTTGTCACCAGGAGCGTCCCTACAGAACGTGACCAAGTTCTACAAGGCTGGTTATGCTGCTGTTCGAAAGCACTCCTCCACAGCATACGTGGTGTTGTCAAACAGGCTAGGACCAATGGAGCCTAGGGAGCTTTTCCCCCTTGCCAAGGACTTCAAGCGTTCTGTGATCGATGTCCATTACTATAACCTCTTTGTGAGCACCTTCGACAACATCACTGTCCAACAAAACATAGACTTCATCTACACCAATCGGTCCCAGCAATTGAATTATGTCACCACATCGAACGGCCCTCTCATTTTTGTTGGTACGCGATCAACTCCCTGTGAATGGGTGGCTGCGTGGAATATTAAAGAGGCAACAAGGGCGGATTACCAAAGATTTGCCAATGCTCAATTAGAAGTTTGGGGGAGAGCAACATTTGGGTGGGCTTATTGGACTCTTAAGAACGTCAAGAACTACTGGAGTCTTGAGTGGATGATAAAGAATGGTTATATAAAACTTACTTAG

Protein Analysis

491

Amino Acids

55.5

Weight (kDa)

9.47

Isoelectric Point (pI)

34.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 734
AccB7I CCANNNNNTGG 1 cut(s) 54
AccII CGCG 1 cut(s) 1276
AciI CCGC 2 cut(s) 269, 1331
AclWI GGATC 2 cut(s) 356, 593
AcsI RAATTY 1 cut(s) 118
AcuI CTGAAG 2 cut(s) 218, 303
AfaI GTAC 2 cut(s) 580, 1273
AfiI CCNNNNNNNGG 3 cut(s) 54, 1111, 1293
AflII CTTAAG 1 cut(s) 1406
AflIII ACRYGT 1 cut(s) 743
AgsI TTSAA 6 cut(s) 43, 382, 470, 650, 1120, 1231
AjnI CCWGG 4 cut(s) 47, 802, 914, 973
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AluBI AGCT 4 cut(s) 434, 563, 952, 1096
AluI AGCT 4 cut(s) 434, 563, 952, 1096
Alw21I GWGCWC 2 cut(s) 954, 1166
Alw26I GTCTC 1 cut(s) 455
AlwI GGATC 2 cut(s) 356, 593
AoxI GGCC 1 cut(s) 1252
ApeKI GCWGC 3 cut(s) 797, 1022, 1301
ApoI RAATTY 1 cut(s) 118
ArsI GACNNNNNNTTYG 2 cut(s) 296, 328
Asp700I GAANNNNTTC 1 cut(s) 524
AspA2I CCTAGG 1 cut(s) 1088
AspLEI GCGC 1 cut(s) 498
AspS9I GGNCC 4 cut(s) 668, 1076, 1218, 1253
AsuC2I CCSGG 2 cut(s) 450, 500
AsuHPI GGTGA 4 cut(s) 306, 568, 963, 1231
AsuII TTCGAA 3 cut(s) 440, 505, 1030
AvaII GGWCC 3 cut(s) 668, 1076, 1218
AvrII CCTAGG 1 cut(s) 1088
BanII GRGCYC 3 cut(s) 75, 932, 954
BbsI GAAGAC 1 cut(s) 370
Bbv12I GWGCWC 2 cut(s) 954, 1166
BbvI GCAGC 3 cut(s) 809, 1009, 1288
BccI CCATC 4 cut(s) 188, 215, 610, 836
BceAI ACGGC 1 cut(s) 1267
BciT130I CCWGG 4 cut(s) 49, 804, 916, 975
BcnI CCSGG 2 cut(s) 450, 500
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 2 cut(s) 1073, 1089
BfmI CTRYAG 1 cut(s) 986
BfrI CTTAAG 1 cut(s) 1406
BisI GCNGC 4 cut(s) 270, 798, 1023, 1302
BlnI CCTAGG 1 cut(s) 1088
BlsI GCNGC 4 cut(s) 271, 799, 1024, 1303
BmcAI AGTACT 1 cut(s) 580
Bme1390I CCNGG 6 cut(s) 49, 450, 500, 804, 916, 975
Bme18I GGWCC 3 cut(s) 668, 1076, 1218
BmgT120I GGNCC 4 cut(s) 668, 1076, 1218, 1253
BmiI GGNNCC 5 cut(s) 59, 74, 681, 1086, 1220
BmrFI CCNGG 6 cut(s) 49, 450, 500, 804, 916, 975
BmrI ACTGGG 1 cut(s) 264
BmsI GCATC 1 cut(s) 300
BmuI ACTGGG 1 cut(s) 264
BpiI GAAGAC 1 cut(s) 370
BplI GAGNNNNNCTC 2 cut(s) 97, 129
BpmI CTGGAG 3 cut(s) 31, 898, 1447
Bpu10I CCTNAGC 1 cut(s) 62
Bpu14I TTCGAA 3 cut(s) 440, 505, 1030
BpuEI CTTGAG 1 cut(s) 1454
BpuMI CCSGG 2 cut(s) 450, 500
Bsa29I ATCGAT 1 cut(s) 1134
BsaAI YACGTR 1 cut(s) 1054
BsaJI CCNNGG 3 cut(s) 48, 1088, 1110
BsaWI WCCGGW 1 cut(s) 122
Bsc4I CCNNNNNNNGG 3 cut(s) 54, 1111, 1293
Bse1I ACTGG 3 cut(s) 232, 259, 1430
Bse3DI GCAATG 1 cut(s) 421
BseBI CCWGG 4 cut(s) 49, 804, 916, 975
BseCI ATCGAT 1 cut(s) 1134
BseDI CCNNGG 3 cut(s) 48, 1088, 1110
BseGI GGATG 2 cut(s) 226, 1446
BseLI CCNNNNNNNGG 3 cut(s) 54, 1111, 1293
BseMI GCAATG 1 cut(s) 421
BseMII CTCAG 4 cut(s) 128, 264, 437, 863
BseNI ACTGG 3 cut(s) 232, 259, 1430
BseRI GAGGAG 3 cut(s) 297, 589, 1030
BseXI GCAGC 3 cut(s) 809, 1009, 1288
BseYI CCCAGC 2 cut(s) 324, 1221
Bsh1236I CGCG 1 cut(s) 1276
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 1 cut(s) 1254
BshVI ATCGAT 1 cut(s) 1134
BsiEI CGRYCG 1 cut(s) 127
BsiHKAI GWGCWC 2 cut(s) 954, 1166
BsiSI CCGG 3 cut(s) 123, 449, 499
BslFI GGGAC 3 cut(s) 873, 967, 1204
BslI CCNNNNNNNGG 3 cut(s) 54, 1111, 1293
BsmAI GTCTC 1 cut(s) 455
BsmBI CGTCTC 1 cut(s) 455
BsmFI GGGAC 3 cut(s) 873, 967, 1204
BsmI GAATGC 2 cut(s) 114, 198
BsnI GGCC 1 cut(s) 1254
Bsp119I TTCGAA 3 cut(s) 440, 505, 1030
Bsp1286I GDGCHC 4 cut(s) 75, 932, 954, 1166
Bsp143I GATC 6 cut(s) 348, 542, 598, 787, 1131, 1277
BspACI CCGC 2 cut(s) 269, 1331
BspANI GGCC 1 cut(s) 1254
BspCNI CTCAG 4 cut(s) 127, 265, 436, 862
BspDI ATCGAT 1 cut(s) 1134
BspFNI CGCG 1 cut(s) 1276
BspLI GGNNCC 5 cut(s) 59, 74, 681, 1086, 1220
BspPI GGATC 2 cut(s) 356, 593
BspT104I TTCGAA 3 cut(s) 440, 505, 1030
BspTI CTTAAG 1 cut(s) 1406
BsrDI GCAATG 1 cut(s) 421
BsrI ACTGG 3 cut(s) 232, 259, 1430
BssECI CCNNGG 3 cut(s) 48, 1088, 1110
BssMI GATC 6 cut(s) 348, 542, 598, 787, 1131, 1277
BssT1I CCWWGG 2 cut(s) 1088, 1110
Bst2UI CCWGG 4 cut(s) 49, 804, 916, 975
Bst4CI ACNGT 3 cut(s) 830, 889, 1183
BstAFI CTTAAG 1 cut(s) 1406
BstBAI YACGTR 1 cut(s) 1054
BstBI TTCGAA 3 cut(s) 440, 505, 1030
BstC8I GCNNGC 1 cut(s) 537
BstDEI CTNAG 7 cut(s) 62, 114, 273, 423, 849, 924, 1470
BstENI CCTNNNNNAGG 1 cut(s) 1109
BstF5I GGATG 2 cut(s) 226, 1446
BstFNI CGCG 1 cut(s) 1276
BstHHI GCGC 1 cut(s) 498
BstKTI GATC 6 cut(s) 351, 545, 601, 790, 1134, 1280
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 6 cut(s) 348, 542, 598, 787, 1131, 1277
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 4 cut(s) 569, 1019, 1093, 1328
BstNI CCWGG 4 cut(s) 49, 804, 916, 975
BstNSI RCATGY 1 cut(s) 747
BstSCI CCNGG 6 cut(s) 47, 448, 498, 802, 914, 973
BstSFI CTRYAG 1 cut(s) 986
BstUI CGCG 1 cut(s) 1276
BstV1I GCAGC 3 cut(s) 809, 1009, 1288
BstV2I GAAGAC 1 cut(s) 370
Bsu15I ATCGAT 1 cut(s) 1134
BsuRI GGCC 1 cut(s) 1254
BsuTUI ATCGAT 1 cut(s) 1134
BtsCI GGATG 2 cut(s) 226, 1446
BtsIMutI CAGTG 2 cut(s) 835, 1179
Cac8I GCNNGC 1 cut(s) 537
CfoI GCGC 1 cut(s) 498
Cfr13I GGNCC 4 cut(s) 668, 1076, 1218, 1253
ClaI ATCGAT 1 cut(s) 1134
CseI GACGC 1 cut(s) 969
Csp6I GTAC 2 cut(s) 579, 1272
CspCI CAANNNNNGTGG 2 cut(s) 674, 709
CviAII CATG 5 cut(s) 54, 676, 744, 794, 893
CviQI GTAC 2 cut(s) 579, 1272
DdeI CTNAG 7 cut(s) 62, 114, 273, 423, 849, 924, 1470
DpnI GATC 6 cut(s) 350, 544, 600, 789, 1133, 1279
DpnII GATC 6 cut(s) 348, 542, 598, 787, 1131, 1277
DraI TTTAAA 2 cut(s) 241, 337
EciI GGCGGA 1 cut(s) 1346
Ecl136II GAGCTC 1 cut(s) 952
Eco130I CCWWGG 2 cut(s) 1088, 1110
Eco24I GRGCYC 3 cut(s) 75, 932, 954
Eco47I GGWCC 3 cut(s) 668, 1076, 1218
Eco53kI GAGCTC 1 cut(s) 952
Eco57I CTGAAG 2 cut(s) 218, 303
EcoICRI GAGCTC 1 cut(s) 952
EcoNI CCTNNNNNAGG 1 cut(s) 1109
EcoRI GAATTC 1 cut(s) 118
EcoRII CCWGG 4 cut(s) 47, 802, 914, 973
EcoT14I CCWWGG 2 cut(s) 1088, 1110
EcoT38I GRGCYC 3 cut(s) 75, 932, 954
ErhI CCWWGG 2 cut(s) 1088, 1110
Esp3I CGTCTC 1 cut(s) 455
FaeI CATG 5 cut(s) 57, 679, 747, 797, 896
FalI AAGNNNNNCTT 2 cut(s) 200, 232
FaqI GGGAC 3 cut(s) 873, 967, 1204
FatI CATG 5 cut(s) 53, 675, 743, 793, 892
Fnu4HI GCNGC 4 cut(s) 270, 798, 1023, 1302
FokI GGATG 2 cut(s) 233, 1453
FriOI GRGCYC 3 cut(s) 75, 932, 954
Fsp4HI GCNGC 4 cut(s) 270, 798, 1023, 1302
FspBI CTAG 2 cut(s) 1073, 1089
GlaI GCGC 1 cut(s) 497
GluI GCNGC 4 cut(s) 270, 798, 1023, 1302
GsaI CCCAGC 2 cut(s) 328, 1225
GsuI CTGGAG 3 cut(s) 31, 898, 1447
HaeIII GGCC 1 cut(s) 1254
HapII CCGG 3 cut(s) 123, 449, 499
HgaI GACGC 1 cut(s) 969
HhaI GCGC 1 cut(s) 498
Hin1II CATG 5 cut(s) 57, 679, 747, 797, 896
Hin6I GCGC 1 cut(s) 496
HinP1I GCGC 1 cut(s) 496
HinfI GANTC 4 cut(s) 507, 525, 1402, 1429
HpaII CCGG 3 cut(s) 123, 449, 499
HphI GGTGA 4 cut(s) 306, 568, 963, 1231
Hpy188I TCNGA 3 cut(s) 117, 460, 547
Hpy188III TCNNGA 5 cut(s) 627, 837, 851, 1417, 1433
HpyAV CCTTC 5 cut(s) 161, 192, 327, 632, 1177
HpyCH4III ACNGT 3 cut(s) 830, 889, 1183
HpyCH4IV ACGT 6 cut(s) 311, 362, 464, 993, 1053, 1413
HpyCH4V TGCA 5 cut(s) 4, 302, 535, 797, 944
HpyF10VI GCNNNNNNNGC 4 cut(s) 569, 1019, 1093, 1328
HpyF3I CTNAG 7 cut(s) 62, 114, 273, 423, 849, 924, 1470
HpySE526I ACGT 6 cut(s) 311, 362, 464, 993, 1053, 1413
Hsp92II CATG 5 cut(s) 57, 679, 747, 797, 896
HspAI GCGC 1 cut(s) 496
Kzo9I GATC 6 cut(s) 348, 542, 598, 787, 1131, 1277
LmnI GCTCC 6 cut(s) 63, 78, 685, 977, 1084, 1093
Lsp1109I GCAGC 3 cut(s) 809, 1009, 1288
LweI GCATC 1 cut(s) 300
MaeI CTAG 2 cut(s) 1073, 1089
MaeII ACGT 6 cut(s) 311, 362, 464, 993, 1053, 1413
MaeIII GTNAC 8 cut(s) 160, 247, 312, 556, 652, 969, 994, 1237
MalI GATC 6 cut(s) 350, 544, 600, 789, 1133, 1279
MboI GATC 6 cut(s) 348, 542, 598, 787, 1131, 1277
MboII GAAGA 3 cut(s) 90, 370, 520
MfeI CAATTG 1 cut(s) 1226
MhlI GDGCHC 4 cut(s) 75, 932, 954, 1166
MluCI AATT 8 cut(s) 118, 338, 367, 632, 783, 1226, 1231, 1358
MlyI GAGTC 2 cut(s) 1396, 1438
MmeI TCCRAC 1 cut(s) 1210
MroXI GAANNNNTTC 1 cut(s) 524
MslI CAYNNNNRTG 1 cut(s) 1387
MspA1I CMGCKG 1 cut(s) 563
MspCI CTTAAG 1 cut(s) 1406
MspI CCGG 3 cut(s) 123, 449, 499
MspR9I CCNGG 6 cut(s) 49, 450, 500, 804, 916, 975
MunI CAATTG 1 cut(s) 1226
Mva1269I GAATGC 2 cut(s) 114, 198
MvaI CCWGG 4 cut(s) 49, 804, 916, 975
MvnI CGCG 1 cut(s) 1276
MwoI GCNNNNNNNGC 4 cut(s) 569, 1019, 1093, 1328
NciI CCSGG 2 cut(s) 450, 500
NdeII GATC 6 cut(s) 348, 542, 598, 787, 1131, 1277
NlaIII CATG 5 cut(s) 57, 679, 747, 797, 896
NlaIV GGNNCC 5 cut(s) 59, 74, 681, 1086, 1220
NmuCI GTSAC 6 cut(s) 247, 312, 556, 969, 994, 1237
NspI RCATGY 1 cut(s) 747
NspV TTCGAA 3 cut(s) 440, 505, 1030
PciI ACATGT 1 cut(s) 743
PctI GAATGC 2 cut(s) 114, 198
PdmI GAANNNNTTC 1 cut(s) 524
PfeI GAWTC 2 cut(s) 507, 525
PflMI CCANNNNNTGG 1 cut(s) 54
PkrI GCNGC 4 cut(s) 271, 799, 1024, 1303
PleI GAGTC 2 cut(s) 1396, 1437
PpsI GAGTC 2 cut(s) 1396, 1437
Ppu21I YACGTR 1 cut(s) 1054
PscI ACATGT 1 cut(s) 743
PsiI TTATAA 1 cut(s) 734
Psp124BI GAGCTC 1 cut(s) 954
Psp6I CCWGG 4 cut(s) 47, 802, 914, 973
PspFI CCCAGC 2 cut(s) 324, 1221
PspGI CCWGG 4 cut(s) 47, 802, 914, 973
PspN4I GGNNCC 5 cut(s) 59, 74, 681, 1086, 1220
PspPI GGNCC 4 cut(s) 668, 1076, 1218, 1253
PvuII CAGCTG 1 cut(s) 563
RsaI GTAC 2 cut(s) 580, 1273
RsaNI GTAC 2 cut(s) 579, 1272
RseI CAYNNNNRTG 1 cut(s) 1387
SacI GAGCTC 1 cut(s) 954
SatI GCNGC 4 cut(s) 270, 798, 1023, 1302
Sau3AI GATC 6 cut(s) 348, 542, 598, 787, 1131, 1277
Sau96I GGNCC 4 cut(s) 668, 1076, 1218, 1253
ScaI AGTACT 1 cut(s) 580
SchI GAGTC 2 cut(s) 1396, 1438
ScrFI CCNGG 6 cut(s) 49, 450, 500, 804, 916, 975
SduI GDGCHC 4 cut(s) 75, 932, 954, 1166
SfaNI GCATC 1 cut(s) 300
SfcI CTRYAG 1 cut(s) 986
SfuI TTCGAA 3 cut(s) 440, 505, 1030
SinI GGWCC 3 cut(s) 668, 1076, 1218
SmiI ATTTAAAT 1 cut(s) 337
SmiMI CAYNNNNRTG 1 cut(s) 1387
SmlI CTYRAG 2 cut(s) 1406, 1433
SmoI CTYRAG 2 cut(s) 1406, 1433
Sse9I AATT 8 cut(s) 118, 338, 367, 632, 783, 1226, 1231, 1358
SsiI CCGC 2 cut(s) 269, 1331
SspI AATATT 1 cut(s) 1312
SspMI CTAG 2 cut(s) 1073, 1089
SstI GAGCTC 1 cut(s) 954
StyD4I CCNGG 6 cut(s) 47, 448, 498, 802, 914, 973
StyI CCWWGG 2 cut(s) 1088, 1110
SwaI ATTTAAAT 1 cut(s) 337
TaaI ACNGT 3 cut(s) 830, 889, 1183
TaiI ACGT 6 cut(s) 314, 365, 467, 996, 1056, 1416
TaqI TCGA 8 cut(s) 127, 192, 440, 505, 1030, 1134, 1170, 1247
TaqII GACCGA 1 cut(s) 1206
TasI AATT 8 cut(s) 118, 338, 367, 632, 783, 1226, 1231, 1358
TatI WGTACW 1 cut(s) 578
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 2 cut(s) 507, 525
TscAI CASTG 2 cut(s) 835, 1186
TseFI GTSAC 6 cut(s) 247, 312, 556, 969, 994, 1237
TseI GCWGC 3 cut(s) 797, 1022, 1301
Tsp45I GTSAC 6 cut(s) 247, 312, 556, 969, 994, 1237
TspDTI ATGAA 3 cut(s) 837, 881, 1192
TspRI CASTG 2 cut(s) 835, 1186
Van91I CCANNNNNTGG 1 cut(s) 54
Vha464I CTTAAG 1 cut(s) 1406
VpaK11BI GGWCC 3 cut(s) 668, 1076, 1218
XagI CCTNNNNNAGG 1 cut(s) 1109
XapI RAATTY 1 cut(s) 118
XceI RCATGY 1 cut(s) 747
XcmI CCANNNNNNNNNTGG 2 cut(s) 690, 1051
XmaJI CCTAGG 1 cut(s) 1088
XmnI GAANNNNTTC 1 cut(s) 524
XspI CTAG 2 cut(s) 1073, 1089
ZrmI AGTACT 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.