Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8458197.1

Orthogroup ID

OG0002687

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1167

Gene Structure 1166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8458197.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 740 bp

atgactgctcaaacttctactccagtaaaagcagttaatctcggaggttggctacttacagaaggctggattaaaccttctcttttcgacggcattcccaacaaggacttcttggatggaaccggccttcagttcaaatcagtcacaactgggaaatttcttgctgctgagaagggaggaggaagcatcatagttgccaaccgaacctcagcttcaggctgggaaacattcaaattgtggaggatcaatgagaccacatttaatttcagggtcttcggtaaacaatttgtgggaattgatgtaaagggaaatggaaaagacgtggtggctgttgtgaccgcgccaggtgtatcggaaacatttgaaatcataagaaaaccggatgattcaagccgggtacggatcaaagcacccaatggattcttcttgcaggcgaagacagaggtgttggttacagctgattatgcagagagtagtagtggatggggagacaatgatccttctgtttttgtgattaccatttctggacgcttgcagggggagtttcagataacaaatggttatggcaaattggctcctgaagtcatgaaggagcactggagaacattcatcgttgaagaagactttgacttcatatcaaaaaatggattaaacgcagtgagaataccagttggttggtggatatcaagcgacccaaaccctccacacccttatgtcgggggttccttgaaagccttgga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005575 GO:0005576 GO:0005623 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0015926 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044464 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulase

Protein Analysis

246

Amino Acids

26.88

Weight (kDa)

6.76

Isoelectric Point (pI)

24.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21360 FvH4_1g21360 FvH4_1g21420 FvH4_5g37950
malus_domestica	MD01G1025400.v1.1 MD08G1178600.v1.1
prunus_persica	Prupe.1G512300_v2.0.a1 Prupe.6G181100_v2.0.a1
pyrus_communis	pycom01g05350 pycom08g15290 pycom08g15300
rosa_chinensis	RchiOBHm_Chr2g0115211 RchiOBHm_Chr7g0239891
rosa_laevigata	RLG00000000720 RLG00000018166
rosa_multiflora	Rmu_co8458197.1_g000001 Rmu_sc0000540.1_g000053 Rmu_sc0002784.1_g000034 Rmu_sc0005738.1_g000014 Rmu_sc0032904.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130710 Rroxscaffold_2G00130730 Rroxscaffold_3G00220700
rosa_rugosa	Rorug02G0194700 Rorug02G0194800 Rorug02G0194800 Rorug02G0194900 Rorug07G0331000
rosa_samantha	Rh2AG252900 Rh2AG253000 Rh2BG262600 Rh2CG257600 Rh2DG261100 Rh2DG261200 Rh7AG484400 Rh7BG457600 Rh7CG501900 Rh7DG470100
rosa_wichuraiana	Rw2G019750 Rw7G040640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	341
AciI	CCGC	1 cut(s)	339
AclWI	GGATC	3 cut(s)	251, 410, 491
AcsI	RAATTY	1 cut(s)	155
AcuI	CTGAAG	3 cut(s)	113, 198, 600
AfaI	GTAC	1 cut(s)	399
AfiI	CCNNNNNNNGG	1 cut(s)	716
AgsI	TTSAA	6 cut(s)	136, 232, 365, 390, 617, 730
AjiI	CACGTC	1 cut(s)	322
AjnI	CCWGG	1 cut(s)	343
AjuI	GAANNNNNNNTTGG	4 cut(s)	92, 124, 407, 439
AluBI	AGCT	2 cut(s)	212, 458
AluI	AGCT	2 cut(s)	212, 458
Alw21I	GWGCWC	1 cut(s)	597
Alw26I	GTCTC	2 cut(s)	245, 483
AlwI	GGATC	3 cut(s)	251, 410, 491
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	1 cut(s)	155
AspLEI	GCGC	1 cut(s)	343
AsuC2I	CCSGG	1 cut(s)	395
BbsI	GAAGAC	3 cut(s)	265, 443, 627
Bbv12I	GWGCWC	1 cut(s)	597
BbvCI	CCTCAGC	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	2 cut(s)	110, 477
BceAI	ACGGC	1 cut(s)	106
BciT130I	CCWGG	1 cut(s)	345
BcnI	CCSGG	1 cut(s)	395
BcoDI	GTCTC	2 cut(s)	245, 483
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
Bme1390I	CCNGG	2 cut(s)	345, 395
BmgBI	CACGTC	1 cut(s)	322
BmiI	GGNNCC	3 cut(s)	121, 576, 724
BmrFI	CCNGG	2 cut(s)	345, 395
BmrI	ACTGGG	1 cut(s)	159
BmsI	GCATC	1 cut(s)	195
BmuI	ACTGGG	1 cut(s)	159
BpiI	GAAGAC	3 cut(s)	265, 443, 627
BpmI	CTGGAG	2 cut(s)	6, 619
Bpu10I	CCTNAGC	1 cut(s)	208
BpuMI	CCSGG	1 cut(s)	395
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	735
BsaWI	WCCGGW	1 cut(s)	379
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	716
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	4 cut(s)	23, 154, 602, 668
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	735
BseGI	GGATG	3 cut(s)	121, 388, 488
BseLI	CCNNNNNNNGG	1 cut(s)	716
BseMII	CTCAG	2 cut(s)	159, 222
BseNI	ACTGG	4 cut(s)	23, 154, 602, 668
BseRI	GAGGAG	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	151
BseYI	CCCAGC	1 cut(s)	219
Bsh1236I	CGCG	1 cut(s)	341
BshFI	GGCC	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	597
BsiSI	CCGG	3 cut(s)	123, 380, 394
BslI	CCNNNNNNNGG	1 cut(s)	716
BsmAI	GTCTC	2 cut(s)	245, 483
BsmI	GAATGC	1 cut(s)	93
BsnI	GGCC	1 cut(s)	126
Bso31I	GGTCTC	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	597
Bsp143I	GATC	3 cut(s)	243, 402, 496
BspACI	CCGC	1 cut(s)	339
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	2 cut(s)	160, 221
BspFNI	CGCG	1 cut(s)	341
BspHI	TCATGA	1 cut(s)	585
BspLI	GGNNCC	3 cut(s)	121, 576, 724
BspPI	GGATC	3 cut(s)	251, 410, 491
BspTNI	GGTCTC	1 cut(s)	245
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	4 cut(s)	23, 154, 602, 668
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	1 cut(s)	735
BssMI	GATC	3 cut(s)	243, 402, 496
BssT1I	CCWWGG	1 cut(s)	735
Bst2UI	CCWGG	1 cut(s)	345
BstC8I	GCNNGC	2 cut(s)	432, 533
BstDEI	CTNAG	2 cut(s)	168, 208
BstF5I	GGATG	3 cut(s)	121, 388, 488
BstFNI	CGCG	1 cut(s)	341
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	3 cut(s)	246, 405, 499
BstMAI	GTCTC	2 cut(s)	245, 483
BstMBI	GATC	3 cut(s)	243, 402, 496
BstMWI	GCNNNNNNNGC	1 cut(s)	464
BstNI	CCWGG	1 cut(s)	345
BstSCI	CCNGG	2 cut(s)	343, 393
BstUI	CGCG	1 cut(s)	341
BstV1I	GCAGC	1 cut(s)	151
BstV2I	GAAGAC	3 cut(s)	265, 443, 627
BstXI	CCANNNNNNTGG	1 cut(s)	675
BsuRI	GGCC	1 cut(s)	126
BtrI	CACGTC	1 cut(s)	322
BtsCI	GGATG	3 cut(s)	121, 388, 488
BtsI	GCAGTG	1 cut(s)	663
BtsIMutI	CAGTG	2 cut(s)	595, 663
Cac8I	GCNNGC	2 cut(s)	432, 533
CciI	TCATGA	1 cut(s)	585
CfoI	GCGC	1 cut(s)	343
Cfr10I	RCCGGY	1 cut(s)	122
CseI	GACGC	1 cut(s)	537
Csp6I	GTAC	1 cut(s)	398
CviAII	CATG	1 cut(s)	586
CviQI	GTAC	1 cut(s)	398
DdeI	CTNAG	2 cut(s)	168, 208
DpnI	GATC	3 cut(s)	245, 404, 498
DpnII	GATC	3 cut(s)	243, 402, 496
Eco130I	CCWWGG	1 cut(s)	735
Eco31I	GGTCTC	1 cut(s)	245
Eco32I	GATATC	1 cut(s)	684
Eco57I	CTGAAG	3 cut(s)	113, 198, 600
EcoRII	CCWGG	1 cut(s)	343
EcoRV	GATATC	1 cut(s)	684
EcoT14I	CCWWGG	1 cut(s)	735
ErhI	CCWWGG	1 cut(s)	735
FaeI	CATG	1 cut(s)	589
FaiI	YATR	7 cut(s)	191, 371, 465, 564, 587, 635, 714
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FatI	CATG	1 cut(s)	585
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	3 cut(s)	128, 395, 495
Fsp4HI	GCNGC	1 cut(s)	165
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	1 cut(s)	165
GsaI	CCCAGC	1 cut(s)	223
GsuI	CTGGAG	2 cut(s)	6, 619
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	3 cut(s)	123, 380, 394
HgaI	GACGC	1 cut(s)	537
HhaI	GCGC	1 cut(s)	343
Hin1II	CATG	1 cut(s)	589
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HinfI	GANTC	2 cut(s)	386, 420
HpaII	CCGG	3 cut(s)	123, 380, 394
Hpy166II	GTNNAC	1 cut(s)	281
Hpy188I	TCNGA	3 cut(s)	44, 355, 549
Hpy188III	TCNNGA	3 cut(s)	525, 578, 586
Hpy8I	GTNNAC	1 cut(s)	281
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	6 cut(s)	56, 87, 137, 166, 510, 583
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	3 cut(s)	430, 467, 535
HpyF10VI	GCNNNNNNNGC	1 cut(s)	464
HpyF3I	CTNAG	2 cut(s)	168, 208
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	1 cut(s)	589
HspAI	GCGC	1 cut(s)	341
Kzo9I	GATC	3 cut(s)	243, 402, 496
LmnI	GCTCC	2 cut(s)	580, 592
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	1 cut(s)	195
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	3 cut(s)	142, 334, 451
MalI	GATC	3 cut(s)	245, 404, 498
MboI	GATC	3 cut(s)	243, 402, 496
MboII	GAAGA	5 cut(s)	265, 415, 448, 629, 632
MhlI	GDGCHC	1 cut(s)	597
MluCI	AATT	6 cut(s)	155, 233, 262, 284, 294, 569
MnlI	CCTC	7 cut(s)	38, 170, 173, 217, 234, 436, 711
MseI	TTAA	4 cut(s)	36, 72, 261, 650
MslI	CAYNNNNRTG	1 cut(s)	711
MspA1I	CMGCKG	1 cut(s)	458
MspI	CCGG	3 cut(s)	123, 380, 394
MspR9I	CCNGG	2 cut(s)	345, 395
Mva1269I	GAATGC	1 cut(s)	93
MvaI	CCWGG	1 cut(s)	345
MvnI	CGCG	1 cut(s)	341
MwoI	GCNNNNNNNGC	1 cut(s)	464
NciI	CCSGG	1 cut(s)	395
NdeII	GATC	3 cut(s)	243, 402, 496
NlaIII	CATG	1 cut(s)	589
NlaIV	GGNNCC	3 cut(s)	121, 576, 724
NmuCI	GTSAC	2 cut(s)	142, 334
PagI	TCATGA	1 cut(s)	585
PctI	GAATGC	1 cut(s)	93
PfeI	GAWTC	2 cut(s)	386, 420
PkrI	GCNGC	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	343
PspFI	CCCAGC	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	3 cut(s)	121, 576, 724
PvuII	CAGCTG	1 cut(s)	458
RsaI	GTAC	1 cut(s)	399
RsaNI	GTAC	1 cut(s)	398
RseI	CAYNNNNRTG	1 cut(s)	711
SaqAI	TTAA	4 cut(s)	36, 72, 261, 650
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	3 cut(s)	243, 402, 496
ScrFI	CCNGG	2 cut(s)	345, 395
SduI	GDGCHC	1 cut(s)	597
SetI	ASST	8 cut(s)	49, 79, 209, 214, 324, 349, 447, 460
SfaNI	GCATC	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	711
Sse9I	AATT	6 cut(s)	155, 233, 262, 284, 294, 569
SsiI	CCGC	1 cut(s)	339
StyD4I	CCNGG	2 cut(s)	343, 393
StyI	CCWWGG	1 cut(s)	735
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	1 cut(s)	87
TasI	AATT	6 cut(s)	155, 233, 262, 284, 294, 569
TfiI	GAWTC	2 cut(s)	386, 420
Tru1I	TTAA	4 cut(s)	36, 72, 261, 650
Tru9I	TTAA	4 cut(s)	36, 72, 261, 650
TscAI	CASTG	2 cut(s)	602, 663
TseFI	GTSAC	2 cut(s)	142, 334
TseI	GCWGC	1 cut(s)	164
Tsp45I	GTSAC	2 cut(s)	142, 334
TspDTI	ATGAA	3 cut(s)	598, 602, 622
TspGWI	ACGGA	1 cut(s)	415
TspRI	CASTG	2 cut(s)	602, 663
XapI	RAATTY	1 cut(s)	155
XcmI	CCANNNNNNNNNTGG	1 cut(s)	675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.