Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002687

Physical Location & Seq

Genomic Coordinates Forward (+)

26544107 .. 26544862

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G019750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTGCAGATATGCTAAAAATCCAGCTCTCGGAGCAATTGAGTTAATAAATGAGCCTTGGGCACCACTTGTGACTCTAGACACCCTCAAAAAGTATTACAAAGCTGGTTATGATGCAGTAAGGAAGTACACCTCAAGTGCTTATGTGATCCTATCAAACCGCTTGGGACCTGCTGATCAAAAGGAGCTCCTCTCATTTGCCCAAGCCCTCAGTAAGGTAGTCATAGATGTGCATTACTACAGCTTGTATTCAGACATGTTCAACGGTTTTAGTGTGCAACAAAACATTGATTTCATCTACAACCAACGAGGTTCTGATCTAGCAGCTGTGACCACTTCTAATAGACCCCTCACTTTTGTTGGGGAATGGGTTGCAGAATGGGCAATAAATGGAGCATCTATGCAAGACTACCAGAGATTTGCCAAAGCACAACTAAATGTTTATGGCCGTGCTACTTTTGGATGGGCGTACTGGTCTTACAAGTGTCAGTACAATCACTGGAGCCTCAAATGGATGATCGAGAATAACTATATAAAACTCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulase

Protein Analysis

181

Amino Acids

20.91

Weight (kDa)

8.92

Isoelectric Point (pI)

18.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21360 FvH4_1g21360 FvH4_1g21420 FvH4_5g37950
malus_domestica	MD01G1025400.v1.1 MD08G1178600.v1.1
prunus_persica	Prupe.1G512300_v2.0.a1 Prupe.6G181100_v2.0.a1
pyrus_communis	pycom01g05350 pycom08g15290 pycom08g15300
rosa_chinensis	RchiOBHm_Chr2g0115211 RchiOBHm_Chr7g0239891
rosa_laevigata	RLG00000000720 RLG00000018166
rosa_multiflora	Rmu_co8458197.1_g000001 Rmu_sc0000540.1_g000053 Rmu_sc0002784.1_g000034 Rmu_sc0005738.1_g000014 Rmu_sc0032904.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130710 Rroxscaffold_2G00130730 Rroxscaffold_3G00220700
rosa_rugosa	Rorug02G0194700 Rorug02G0194800 Rorug02G0194800 Rorug02G0194900 Rorug07G0331000
rosa_samantha	Rh2AG252900 Rh2AG253000 Rh2BG262600 Rh2CG257600 Rh2DG261100 Rh2DG261200 Rh7AG484400 Rh7BG457600 Rh7CG501900 Rh7DG470100
rosa_wichuraiana	Rw2G019750 Rw7G040640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	178
AccB1I	GGYRCC	1 cut(s)	61
AciI	CCGC	1 cut(s)	160
AclWI	GGATC	1 cut(s)	142
AcoI	YGGCCR	1 cut(s)	445
AfaI	GTAC	3 cut(s)	128, 470, 491
AfiI	CCNNNNNNNGG	2 cut(s)	29, 214
AflIII	ACRYGT	1 cut(s)	255
AgsI	TTSAA	1 cut(s)	262
AluBI	AGCT	5 cut(s)	26, 104, 187, 243, 326
AluI	AGCT	5 cut(s)	26, 104, 187, 243, 326
Alw21I	GWGCWC	1 cut(s)	189
AlwI	GGATC	1 cut(s)	142
AoxI	GGCC	1 cut(s)	445
ApeKI	GCWGC	1 cut(s)	323
AspS9I	GGNCC	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	167
BaeGI	GKGCMC	1 cut(s)	64
BanI	GGYRCC	1 cut(s)	61
BanII	GRGCYC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	335
BccI	CCATC	1 cut(s)	456
BceAI	ACGGC	1 cut(s)	432
BclI	TGATCA	1 cut(s)	175
BfaI	CTAG	2 cut(s)	77, 320
BfmI	CTRYAG	1 cut(s)	238
BfuAI	ACCTGC	1 cut(s)	178
BisI	GCNGC	1 cut(s)	324
BlsI	GCNGC	1 cut(s)	325
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	3 cut(s)	63, 168, 503
BmsI	GCATC	2 cut(s)	103, 404
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
BpmI	CTGGAG	1 cut(s)	520
BpuEI	CTTGAG	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 214
Bse1I	ACTGG	2 cut(s)	476, 503
BseDI	CCNNGG	1 cut(s)	56
BseGI	GGATG	2 cut(s)	467, 519
BseLI	CCNNNNNNNGG	2 cut(s)	29, 214
BseMII	CTCAG	1 cut(s)	223
BseNI	ACTGG	2 cut(s)	476, 503
BseRI	GAGGAG	1 cut(s)	179
BseSI	GKGCMC	1 cut(s)	64
BseXI	GCAGC	1 cut(s)	335
BsgI	GTGCAG	1 cut(s)	25
BshFI	GGCC	1 cut(s)	447
BshNI	GGYRCC	1 cut(s)	61
BsiHKAI	GWGCWC	1 cut(s)	189
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	2 cut(s)	29, 214
BsmFI	GGGAC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	447
Bsp1286I	GDGCHC	2 cut(s)	64, 189
Bsp143I	GATC	4 cut(s)	147, 175, 316, 516
BspACI	CCGC	1 cut(s)	160
BspANI	GGCC	1 cut(s)	447
BspCNI	CTCAG	1 cut(s)	222
BspLI	GGNNCC	3 cut(s)	63, 168, 503
BspMI	ACCTGC	1 cut(s)	178
BspPI	GGATC	1 cut(s)	142
BspT107I	GGYRCC	1 cut(s)	61
BsrI	ACTGG	2 cut(s)	476, 503
BssECI	CCNNGG	1 cut(s)	56
BssMI	GATC	4 cut(s)	147, 175, 316, 516
BssT1I	CCWWGG	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	266
BstDEI	CTNAG	1 cut(s)	209
BstENI	CCTNNNNNAGG	1 cut(s)	212
BstF5I	GGATG	2 cut(s)	467, 519
BstKTI	GATC	4 cut(s)	150, 178, 319, 519
BstMBI	GATC	4 cut(s)	147, 175, 316, 516
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 380
BstNSI	RCATGY	1 cut(s)	259
BstSFI	CTRYAG	1 cut(s)	238
BstSLI	GKGCMC	1 cut(s)	64
BstV1I	GCAGC	1 cut(s)	335
BsuRI	GGCC	1 cut(s)	447
BtsCI	GGATG	2 cut(s)	467, 519
BtsIMutI	CAGTG	1 cut(s)	496
BveI	ACCTGC	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	167
Csp6I	GTAC	3 cut(s)	127, 469, 490
CviAII	CATG	1 cut(s)	256
CviJI	RGCY	9 cut(s)	26, 55, 104, 187, 206, 243, 326, 447, 504
CviKI_1	RGCY	9 cut(s)	26, 55, 104, 187, 206, 243, 326, 447, 504
CviQI	GTAC	3 cut(s)	127, 469, 490
DdeI	CTNAG	1 cut(s)	209
DpnI	GATC	4 cut(s)	149, 177, 318, 518
DpnII	GATC	4 cut(s)	147, 175, 316, 516
EaeI	YGGCCR	1 cut(s)	445
Ecl136II	GAGCTC	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	56
Eco24I	GRGCYC	1 cut(s)	189
Eco47I	GGWCC	1 cut(s)	167
Eco53kI	GAGCTC	1 cut(s)	187
EcoICRI	GAGCTC	1 cut(s)	187
EcoNI	CCTNNNNNAGG	1 cut(s)	212
EcoO109I	RGGNCCY	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	56
EcoT38I	GRGCYC	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	56
FaeI	CATG	1 cut(s)	259
FaiI	YATR	9 cut(s)	12, 111, 144, 224, 257, 401, 444, 531, 533
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	1 cut(s)	255
FbaI	TGATCA	1 cut(s)	175
Fnu4HI	GCNGC	1 cut(s)	324
FokI	GGATG	2 cut(s)	474, 526
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	1 cut(s)	324
FspBI	CTAG	2 cut(s)	77, 320
GluI	GCNGC	1 cut(s)	324
GsuI	CTGGAG	1 cut(s)	520
HaeIII	GGCC	1 cut(s)	447
Hin1II	CATG	1 cut(s)	259
HinfI	GANTC	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188I	TCNGA	3 cut(s)	32, 253, 316
Hpy188III	TCNNGA	2 cut(s)	77, 520
Hpy8I	GTNNAC	1 cut(s)	129
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4V	TGCA	6 cut(s)	6, 116, 232, 277, 374, 403
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 380
HpyF3I	CTNAG	1 cut(s)	209
Hsp92II	CATG	1 cut(s)	259
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	4 cut(s)	147, 175, 316, 516
LmnI	GCTCC	5 cut(s)	32, 184, 192, 392, 501
LpnPI	CCDG	6 cut(s)	36, 90, 183, 425, 457, 484
Lsp1109I	GCAGC	1 cut(s)	335
LweI	GCATC	2 cut(s)	103, 404
MaeI	CTAG	2 cut(s)	77, 320
MaeIII	GTNAC	2 cut(s)	70, 328
MalI	GATC	4 cut(s)	149, 177, 318, 518
MboI	GATC	4 cut(s)	147, 175, 316, 516
MfeI	CAATTG	1 cut(s)	36
MhlI	GDGCHC	2 cut(s)	64, 189
MluCI	AATT	2 cut(s)	36, 541
MlyI	GAGTC	1 cut(s)	67
MnlI	CCTC	7 cut(s)	95, 142, 200, 218, 302, 359, 515
MseI	TTAA	1 cut(s)	44
MslI	CAYNNNNRTG	1 cut(s)	227
MspA1I	CMGCKG	1 cut(s)	326
MunI	CAATTG	1 cut(s)	36
MwoI	GCNNNNNNNGC	2 cut(s)	32, 380
NdeII	GATC	4 cut(s)	147, 175, 316, 516
NlaIII	CATG	1 cut(s)	259
NlaIV	GGNNCC	3 cut(s)	63, 168, 503
NmuCI	GTSAC	2 cut(s)	70, 328
NspI	RCATGY	1 cut(s)	259
PciI	ACATGT	1 cut(s)	255
PkrI	GCNGC	1 cut(s)	325
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
PpuMI	RGGWCCY	1 cut(s)	167
PscI	ACATGT	1 cut(s)	255
Psp124BI	GAGCTC	1 cut(s)	189
Psp5II	RGGWCCY	1 cut(s)	167
PspN4I	GGNNCC	3 cut(s)	63, 168, 503
PspPI	GGNCC	1 cut(s)	167
PspPPI	RGGWCCY	1 cut(s)	167
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	3 cut(s)	128, 470, 491
RsaNI	GTAC	3 cut(s)	127, 469, 490
RseI	CAYNNNNRTG	1 cut(s)	227
SacI	GAGCTC	1 cut(s)	189
SaqAI	TTAA	1 cut(s)	44
SatI	GCNGC	1 cut(s)	324
Sau3AI	GATC	4 cut(s)	147, 175, 316, 516
Sau96I	GGNCC	1 cut(s)	167
SchI	GAGTC	1 cut(s)	67
SduI	GDGCHC	2 cut(s)	64, 189
SetI	ASST	9 cut(s)	28, 106, 134, 172, 189, 219, 245, 313, 328
SfaNI	GCATC	2 cut(s)	103, 404
SfcI	CTRYAG	1 cut(s)	238
SinI	GGWCC	1 cut(s)	167
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
Sse9I	AATT	2 cut(s)	36, 541
SsiI	CCGC	1 cut(s)	160
SspMI	CTAG	2 cut(s)	77, 320
SstI	GAGCTC	1 cut(s)	189
StyI	CCWWGG	1 cut(s)	56
TaaI	ACNGT	1 cut(s)	266
TaqI	TCGA	1 cut(s)	519
TasI	AATT	2 cut(s)	36, 541
TatI	WGTACW	2 cut(s)	126, 489
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TscAI	CASTG	1 cut(s)	503
TseFI	GTSAC	2 cut(s)	70, 328
TseI	GCWGC	1 cut(s)	323
Tsp45I	GTSAC	2 cut(s)	70, 328
TspDTI	ATGAA	1 cut(s)	283
TspRI	CASTG	1 cut(s)	503
VpaK11BI	GGWCC	1 cut(s)	167
XagI	CCTNNNNNAGG	1 cut(s)	212
XbaI	TCTAGA	1 cut(s)	76
XceI	RCATGY	1 cut(s)	259
XspI	CTAG	2 cut(s)	77, 320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.