MD08G1178600.v1.1

Belongs to the glycosyl hydrolase 5 (cellulase A) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
21966004 .. 21969762
3759 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1178600.v1.1.491

Sequence Viewer

Length: 1560 bp
ATGCAACAACAATACAAAGCAAAGCATAAACGAATGGCTTTCAACTCAAGGGCATGGCTTCTAAGCATAGGGCTCCTTTTTTGTATGCTGTCCATTTGTTTTGGGAGAATGCCTCAGAATTCCGGTCGAGTGAAAGCAGTTAATCTTGGAGGGTGGCTGGTTACAGAAGGCTGGATTAAACCTTCTCTTTTCGATGGCATTCCCAACAAGGATTTCTTGGATGGAACTGGACTTCAGTTTAAATCTGTCACAACTGGGAAATATCTTGCGGCTGAGTTGGGAGGAGGAAGCATCATAGTTGCAAACAGAACGTCAGCTTCAGGCTGGGAAACATTTAAATTGTGGAGGATCAACGAAACCACGTTTAATTTCAGGGTCTTCAACAAAGATTTTGTGGGGCTTGATGTCAATGGCAATGGAACTCAGGTGGTAGCTGTTTCGAAAACACCGGGTAGTTCGGAGACGTTTGAAATCATAAGAAAACCTGATGATTTGCGCCGGGTTCGAATCAAAGCACCGAATGGATTCTTCTTGCAGGCAAGATCAGAGGTGCTGGTGACAGCTGATTATGCGAGGAGTACTGGATGGGGAAACAATGATCCATCTGTTTTTGTGATTACCTTTTCTGGAAAATTGGAAGGAGAGTTTCAAGTAACCAATGGTTATGGTCCAAAAAAGGCTCCACAAGTTATGTGGGAACATTGGAATACATTCATAGTTGAGGATGACTTCCACTTCATATCAACAAATGGGTTAAACGCTGTGAGAATACCAGTTGGTTGGTGGATTGCAAGTGATCCCACTCCTCCACACCCTTATGTTGGAGGTTCATTACATGCACTAGACAAAGCCTTCTTGTGGGCACAGAAATATGGATTAAAGGTAATAATTGATCTCCATGCAGCACCAGGCTCTCAAAATGGTTTTGAACACAGTGCTTCCAGAGATGGCTCTCAGGAATGGGGACAAACAGATGAGAACATACAACAGACTGTTCATGTCATTGATTTCTTAACCTCCAGGTATGCTAAGAGCCCAAACCTATATGCAGTTGAGCTCATCAACGAGCCTTTCTCACCAGGAGCGTCCCTACAGAACGTGACCAAGTTCTACAAGGCTGGTTATGCTGCAGTTCGAAAGCACTCCTCCACAGCATACGTGGTGTTGTCAAACAGGCTAGGACCAATGGAGCCCAGGGAGCTTTTCCCCCTTGCCAAGGACTTCAAGCGTTCTGTGATCGATGTCCATTACTATAACCTCTTTGTGAGCACCTTCGACAACATGACTGTCCAACAAAACATAGACTTCATCTACACCAATCGGTCCCAGCAATTGAATTATGTCACCACATCGAACGGCCCTCTCACTTTTGTTGGTGAATGGGTGGCTGAGTGGAATGTTAAAGAGGCAACACAGGCGGATTACCAAAGATTTGCCAATGCTCAATTAGAAGTTTGGGGGAGAGCAACATTTGGGTGGGCTTATTGGACTCTTAAGAACGTCAATAACCGCTGGAGTCTTGAGTGGATGATAAGGAATGGTTATATAAAACTTACTTAG

Protein Analysis

520

Amino Acids

58.67

Weight (kDa)

9.16

Isoelectric Point (pI)

30.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7910 PF25490 69 - 207 2.5e-62 Domain of unknown function (DUF7910)
Cellulase PF00150 234 - 500 2.1e-20 Cellulase (glycosyl hydrolase family 5)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 269, 1418, 1510
AclWI GGATC 3 cut(s) 356, 593, 791
AcsI RAATTY 1 cut(s) 118
AcuI CTGAAG 2 cut(s) 218, 303
AfaI GTAC 1 cut(s) 580
AfiI CCNNNNNNNGG 3 cut(s) 821, 858, 1216
AflII CTTAAG 1 cut(s) 1493
AgsI TTSAA 7 cut(s) 43, 382, 470, 650, 929, 1225, 1336
AjnI CCWGG 4 cut(s) 907, 1019, 1078, 1193
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AluBI AGCT 5 cut(s) 317, 434, 563, 1057, 1201
AluI AGCT 5 cut(s) 317, 434, 563, 1057, 1201
Alw21I GWGCWC 2 cut(s) 1059, 1271
Alw26I GTCTC 1 cut(s) 455
AlwI GGATC 3 cut(s) 356, 593, 791
AoxI GGCC 1 cut(s) 1357
ApeKI GCWGC 2 cut(s) 902, 1127
ApoI RAATTY 1 cut(s) 118
ArsI GACNNNNNNTTYG 2 cut(s) 296, 328
Asp700I GAANNNNTTC 2 cut(s) 524, 710
AspLEI GCGC 1 cut(s) 498
AspS9I GGNCC 4 cut(s) 668, 1181, 1323, 1358
AsuC2I CCSGG 2 cut(s) 450, 500
AsuHPI GGTGA 4 cut(s) 568, 1068, 1336, 1388
AsuII TTCGAA 3 cut(s) 440, 505, 1135
AvaII GGWCC 3 cut(s) 668, 1181, 1323
BaeGI GKGCMC 1 cut(s) 865
BanII GRGCYC 4 cut(s) 75, 1037, 1059, 1194
BbsI GAAGAC 1 cut(s) 370
Bbv12I GWGCWC 2 cut(s) 1059, 1271
BbvI GCAGC 2 cut(s) 914, 1114
BccI CCATC 5 cut(s) 188, 215, 579, 610, 941
BceAI ACGGC 1 cut(s) 1372
BciT130I CCWGG 4 cut(s) 909, 1021, 1080, 1195
BcnI CCSGG 2 cut(s) 450, 500
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 2 cut(s) 842, 1178
BfmI CTRYAG 2 cut(s) 1091, 1128
BfrI CTTAAG 1 cut(s) 1493
BisI GCNGC 3 cut(s) 270, 903, 1128
BlsI GCNGC 3 cut(s) 271, 904, 1129
BmcAI AGTACT 1 cut(s) 580
Bme1390I CCNGG 6 cut(s) 450, 500, 909, 1021, 1080, 1195
Bme18I GGWCC 3 cut(s) 668, 1181, 1323
BmgT120I GGNCC 4 cut(s) 668, 1181, 1323, 1358
BmiI GGNNCC 4 cut(s) 74, 681, 1191, 1325
BmrFI CCNGG 6 cut(s) 450, 500, 909, 1021, 1080, 1195
BmrI ACTGGG 1 cut(s) 264
BmsI GCATC 1 cut(s) 300
BmuI ACTGGG 1 cut(s) 264
BpiI GAAGAC 1 cut(s) 370
BplI GAGNNNNNCTC 4 cut(s) 97, 129, 1058, 1090
BpmI CTGGAG 2 cut(s) 1003, 1534
Bpu14I TTCGAA 3 cut(s) 440, 505, 1135
BpuEI CTTGAG 2 cut(s) 31, 1541
BpuMI CCSGG 2 cut(s) 450, 500
Bsa29I ATCGAT 1 cut(s) 1239
BsaAI YACGTR 1 cut(s) 1159
BsaJI CCNNGG 3 cut(s) 1193, 1194, 1215
BsaWI WCCGGW 1 cut(s) 122
Bsc4I CCNNNNNNNGG 3 cut(s) 821, 858, 1216
Bse1I ACTGG 4 cut(s) 232, 259, 586, 773
Bse3DI GCAATG 1 cut(s) 421
BseBI CCWGG 4 cut(s) 909, 1021, 1080, 1195
BseCI ATCGAT 1 cut(s) 1239
BseDI CCNNGG 3 cut(s) 1193, 1194, 1215
BseGI GGATG 4 cut(s) 226, 590, 730, 1533
BseLI CCNNNNNNNGG 3 cut(s) 821, 858, 1216
BseMI GCAATG 1 cut(s) 421
BseMII CTCAG 5 cut(s) 128, 264, 437, 968, 1380
BseNI ACTGG 4 cut(s) 232, 259, 586, 773
BseRI GAGGAG 4 cut(s) 297, 589, 795, 1135
BseSI GKGCMC 1 cut(s) 865
BseXI GCAGC 2 cut(s) 914, 1114
BseYI CCCAGC 2 cut(s) 324, 1326
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 1 cut(s) 1359
BshVI ATCGAT 1 cut(s) 1239
BsiEI CGRYCG 1 cut(s) 127
BsiHKAI GWGCWC 2 cut(s) 1059, 1271
BsiSI CCGG 3 cut(s) 123, 449, 499
BslFI GGGAC 3 cut(s) 978, 1072, 1309
BslI CCNNNNNNNGG 3 cut(s) 821, 858, 1216
BsmAI GTCTC 1 cut(s) 455
BsmBI CGTCTC 1 cut(s) 455
BsmFI GGGAC 3 cut(s) 978, 1072, 1309
BsmI GAATGC 2 cut(s) 114, 198
BsnI GGCC 1 cut(s) 1359
Bsp119I TTCGAA 3 cut(s) 440, 505, 1135
Bsp1286I GDGCHC 6 cut(s) 75, 865, 1037, 1059, 1194, 1271
Bsp143I GATC 6 cut(s) 348, 542, 598, 796, 892, 1236
BspACI CCGC 3 cut(s) 269, 1418, 1510
BspANI GGCC 1 cut(s) 1359
BspCNI CTCAG 5 cut(s) 127, 265, 436, 967, 1381
BspDI ATCGAT 1 cut(s) 1239
BspLI GGNNCC 4 cut(s) 74, 681, 1191, 1325
BspMAI CTGCAG 1 cut(s) 1132
BspPI GGATC 3 cut(s) 356, 593, 791
BspT104I TTCGAA 3 cut(s) 440, 505, 1135
BspTI CTTAAG 1 cut(s) 1493
BsrDI GCAATG 1 cut(s) 421
BsrI ACTGG 4 cut(s) 232, 259, 586, 773
BssECI CCNNGG 3 cut(s) 1193, 1194, 1215
BssMI GATC 6 cut(s) 348, 542, 598, 796, 892, 1236
BssT1I CCWWGG 1 cut(s) 1215
Bst2UI CCWGG 4 cut(s) 909, 1021, 1080, 1195
Bst4CI ACNGT 3 cut(s) 935, 994, 1288
BstAFI CTTAAG 1 cut(s) 1493
BstBAI YACGTR 1 cut(s) 1159
BstBI TTCGAA 3 cut(s) 440, 505, 1135
BstC8I GCNNGC 1 cut(s) 537
BstDEI CTNAG 8 cut(s) 62, 114, 273, 423, 954, 1029, 1389, 1557
BstENI CCTNNNNNAGG 1 cut(s) 1214
BstF5I GGATG 4 cut(s) 226, 590, 730, 1533
BstHHI GCGC 1 cut(s) 498
BstKTI GATC 6 cut(s) 351, 545, 601, 799, 895, 1239
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 6 cut(s) 348, 542, 598, 796, 892, 1236
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 4 cut(s) 569, 1124, 1198, 1415
BstNI CCWGG 4 cut(s) 909, 1021, 1080, 1195
BstNSI RCATGY 1 cut(s) 839
BstSCI CCNGG 6 cut(s) 448, 498, 907, 1019, 1078, 1193
BstSFI CTRYAG 2 cut(s) 1091, 1128
BstSLI GKGCMC 1 cut(s) 865
BstV1I GCAGC 2 cut(s) 914, 1114
BstV2I GAAGAC 1 cut(s) 370
BstXI CCANNNNNNTGG 1 cut(s) 780
Bsu15I ATCGAT 1 cut(s) 1239
BsuRI GGCC 1 cut(s) 1359
BsuTUI ATCGAT 1 cut(s) 1239
BtsCI GGATG 4 cut(s) 226, 590, 730, 1533
BtsIMutI CAGTG 1 cut(s) 940
Cac8I GCNNGC 1 cut(s) 537
CfoI GCGC 1 cut(s) 498
Cfr13I GGNCC 4 cut(s) 668, 1181, 1323, 1358
ClaI ATCGAT 1 cut(s) 1239
CseI GACGC 1 cut(s) 1074
Csp6I GTAC 1 cut(s) 579
CspCI CAANNNNNGTGG 2 cut(s) 674, 709
CviAII CATG 5 cut(s) 54, 836, 899, 998, 1282
CviQI GTAC 1 cut(s) 579
DdeI CTNAG 8 cut(s) 62, 114, 273, 423, 954, 1029, 1389, 1557
DpnI GATC 6 cut(s) 350, 544, 600, 798, 894, 1238
DpnII GATC 6 cut(s) 348, 542, 598, 796, 892, 1236
DraI TTTAAA 2 cut(s) 241, 337
EciI GGCGGA 1 cut(s) 1433
Ecl136II GAGCTC 1 cut(s) 1057
Eco130I CCWWGG 1 cut(s) 1215
Eco24I GRGCYC 4 cut(s) 75, 1037, 1059, 1194
Eco47I GGWCC 3 cut(s) 668, 1181, 1323
Eco53kI GAGCTC 1 cut(s) 1057
Eco57I CTGAAG 2 cut(s) 218, 303
EcoICRI GAGCTC 1 cut(s) 1057
EcoNI CCTNNNNNAGG 1 cut(s) 1214
EcoRI GAATTC 1 cut(s) 118
EcoRII CCWGG 4 cut(s) 907, 1019, 1078, 1193
EcoT14I CCWWGG 1 cut(s) 1215
EcoT38I GRGCYC 4 cut(s) 75, 1037, 1059, 1194
ErhI CCWWGG 1 cut(s) 1215
Esp3I CGTCTC 1 cut(s) 455
FaeI CATG 5 cut(s) 57, 839, 902, 1001, 1285
FalI AAGNNNNNCTT 2 cut(s) 200, 232
FaqI GGGAC 3 cut(s) 978, 1072, 1309
FatI CATG 5 cut(s) 53, 835, 898, 997, 1281
Fnu4HI GCNGC 3 cut(s) 270, 903, 1128
FokI GGATG 4 cut(s) 233, 597, 737, 1540
FriOI GRGCYC 4 cut(s) 75, 1037, 1059, 1194
Fsp4HI GCNGC 3 cut(s) 270, 903, 1128
FspBI CTAG 2 cut(s) 842, 1178
GlaI GCGC 1 cut(s) 497
GluI GCNGC 3 cut(s) 270, 903, 1128
GsaI CCCAGC 2 cut(s) 328, 1330
GsuI CTGGAG 2 cut(s) 1003, 1534
HaeIII GGCC 1 cut(s) 1359
HapII CCGG 3 cut(s) 123, 449, 499
HgaI GACGC 1 cut(s) 1074
HhaI GCGC 1 cut(s) 498
Hin1II CATG 5 cut(s) 57, 839, 902, 1001, 1285
Hin6I GCGC 1 cut(s) 496
HinP1I GCGC 1 cut(s) 496
HinfI GANTC 4 cut(s) 507, 525, 1489, 1516
HpaII CCGG 3 cut(s) 123, 449, 499
HphI GGTGA 4 cut(s) 568, 1068, 1336, 1388
Hpy188I TCNGA 3 cut(s) 117, 460, 547
Hpy188III TCNNGA 4 cut(s) 627, 942, 956, 1520
HpyAV CCTTC 5 cut(s) 161, 192, 632, 862, 1282
HpyCH4III ACNGT 3 cut(s) 935, 994, 1288
HpyCH4IV ACGT 6 cut(s) 311, 362, 464, 1098, 1158, 1500
HpyCH4V TGCA 8 cut(s) 4, 302, 535, 791, 839, 902, 1049, 1130
HpyF10VI GCNNNNNNNGC 4 cut(s) 569, 1124, 1198, 1415
HpyF3I CTNAG 8 cut(s) 62, 114, 273, 423, 954, 1029, 1389, 1557
HpySE526I ACGT 6 cut(s) 311, 362, 464, 1098, 1158, 1500
Hsp92II CATG 5 cut(s) 57, 839, 902, 1001, 1285
HspAI GCGC 1 cut(s) 496
Kzo9I GATC 6 cut(s) 348, 542, 598, 796, 892, 1236
LmnI GCTCC 5 cut(s) 78, 685, 1082, 1189, 1198
Lsp1109I GCAGC 2 cut(s) 914, 1114
LweI GCATC 1 cut(s) 300
MaeI CTAG 2 cut(s) 842, 1178
MaeII ACGT 6 cut(s) 311, 362, 464, 1098, 1158, 1500
MaeIII GTNAC 6 cut(s) 160, 247, 556, 652, 1099, 1342
MalI GATC 6 cut(s) 350, 544, 600, 798, 894, 1238
MboI GATC 6 cut(s) 348, 542, 598, 796, 892, 1236
MboII GAAGA 2 cut(s) 370, 520
MfeI CAATTG 1 cut(s) 1331
MhlI GDGCHC 6 cut(s) 75, 865, 1037, 1059, 1194, 1271
MluCI AATT 8 cut(s) 118, 338, 367, 632, 888, 1331, 1336, 1445
MlyI GAGTC 2 cut(s) 1483, 1525
MmeI TCCRAC 2 cut(s) 802, 1315
MroXI GAANNNNTTC 2 cut(s) 524, 710
MslI CAYNNNNRTG 2 cut(s) 816, 1474
MspA1I CMGCKG 2 cut(s) 563, 1512
MspCI CTTAAG 1 cut(s) 1493
MspI CCGG 3 cut(s) 123, 449, 499
MspR9I CCNGG 6 cut(s) 450, 500, 909, 1021, 1080, 1195
MunI CAATTG 1 cut(s) 1331
Mva1269I GAATGC 2 cut(s) 114, 198
MvaI CCWGG 4 cut(s) 909, 1021, 1080, 1195
MwoI GCNNNNNNNGC 4 cut(s) 569, 1124, 1198, 1415
NciI CCSGG 2 cut(s) 450, 500
NdeII GATC 6 cut(s) 348, 542, 598, 796, 892, 1236
NlaIII CATG 5 cut(s) 57, 839, 902, 1001, 1285
NlaIV GGNNCC 4 cut(s) 74, 681, 1191, 1325
NmuCI GTSAC 4 cut(s) 247, 556, 1099, 1342
NspI RCATGY 1 cut(s) 839
NspV TTCGAA 3 cut(s) 440, 505, 1135
PasI CCCWGGG 1 cut(s) 1194
PctI GAATGC 2 cut(s) 114, 198
PdmI GAANNNNTTC 2 cut(s) 524, 710
PfeI GAWTC 2 cut(s) 507, 525
PkrI GCNGC 3 cut(s) 271, 904, 1129
PleI GAGTC 2 cut(s) 1483, 1524
PpsI GAGTC 2 cut(s) 1483, 1524
Ppu21I YACGTR 1 cut(s) 1159
Psp124BI GAGCTC 1 cut(s) 1059
Psp6I CCWGG 4 cut(s) 907, 1019, 1078, 1193
PspFI CCCAGC 2 cut(s) 324, 1326
PspGI CCWGG 4 cut(s) 907, 1019, 1078, 1193
PspN4I GGNNCC 4 cut(s) 74, 681, 1191, 1325
PspPI GGNCC 4 cut(s) 668, 1181, 1323, 1358
PstI CTGCAG 1 cut(s) 1132
PvuII CAGCTG 1 cut(s) 563
RsaI GTAC 1 cut(s) 580
RsaNI GTAC 1 cut(s) 579
RseI CAYNNNNRTG 2 cut(s) 816, 1474
SacI GAGCTC 1 cut(s) 1059
SatI GCNGC 3 cut(s) 270, 903, 1128
Sau3AI GATC 6 cut(s) 348, 542, 598, 796, 892, 1236
Sau96I GGNCC 4 cut(s) 668, 1181, 1323, 1358
ScaI AGTACT 1 cut(s) 580
SchI GAGTC 2 cut(s) 1483, 1525
ScrFI CCNGG 6 cut(s) 450, 500, 909, 1021, 1080, 1195
SduI GDGCHC 6 cut(s) 75, 865, 1037, 1059, 1194, 1271
SfaNI GCATC 1 cut(s) 300
SfcI CTRYAG 2 cut(s) 1091, 1128
SfuI TTCGAA 3 cut(s) 440, 505, 1135
SinI GGWCC 3 cut(s) 668, 1181, 1323
SmiI ATTTAAAT 1 cut(s) 337
SmiMI CAYNNNNRTG 2 cut(s) 816, 1474
SmlI CTYRAG 3 cut(s) 46, 1493, 1520
SmoI CTYRAG 3 cut(s) 46, 1493, 1520
Sse9I AATT 8 cut(s) 118, 338, 367, 632, 888, 1331, 1336, 1445
SsiI CCGC 3 cut(s) 269, 1418, 1510
SspMI CTAG 2 cut(s) 842, 1178
SstI GAGCTC 1 cut(s) 1059
StyD4I CCNGG 6 cut(s) 448, 498, 907, 1019, 1078, 1193
StyI CCWWGG 1 cut(s) 1215
SwaI ATTTAAAT 1 cut(s) 337
TaaI ACNGT 3 cut(s) 935, 994, 1288
TaiI ACGT 6 cut(s) 314, 365, 467, 1101, 1161, 1503
TaqI TCGA 8 cut(s) 127, 192, 440, 505, 1135, 1239, 1275, 1352
TaqII GACCGA 1 cut(s) 1311
TasI AATT 8 cut(s) 118, 338, 367, 632, 888, 1331, 1336, 1445
TatI WGTACW 1 cut(s) 578
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 2 cut(s) 507, 525
TscAI CASTG 1 cut(s) 940
TseFI GTSAC 4 cut(s) 247, 556, 1099, 1342
TseI GCWGC 2 cut(s) 902, 1127
Tsp45I GTSAC 4 cut(s) 247, 556, 1099, 1342
TspDTI ATGAA 5 cut(s) 703, 727, 819, 986, 1297
TspRI CASTG 1 cut(s) 940
Vha464I CTTAAG 1 cut(s) 1493
VpaK11BI GGWCC 3 cut(s) 668, 1181, 1323
XagI CCTNNNNNAGG 1 cut(s) 1214
XapI RAATTY 1 cut(s) 118
XceI RCATGY 1 cut(s) 839
XcmI CCANNNNNNNNNTGG 3 cut(s) 690, 780, 1156
XmnI GAANNNNTTC 2 cut(s) 524, 710
XspI CTAG 2 cut(s) 842, 1178
ZrmI AGTACT 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.